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Add a profile for deepthought that everyone in lab can use #167

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chasemc opened this issue May 24, 2021 · 0 comments
Open

Add a profile for deepthought that everyone in lab can use #167

chasemc opened this issue May 24, 2021 · 0 comments
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enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code

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@chasemc
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chasemc commented May 24, 2021

Figure out the easiest way to use an additional profile (or maybe make it an integrated profile option). Details on nf-core profiles can be found here: https://nf-co.re/usage/tutorials/step_by_step_institutional_profile

Example:

params {
    // Specific nf-core/configs params
    config_profile_contact = 'Chase Clark (@chasemc)'
    config_profile_description = 'Kwan lab's "deepthought" server profile'
    config_profile_url = 'NA'

    // General cpus/memory/time requirements
    max_cpus = 90
    max_memory = 900.GB
    max_time = 72.h
}

process {
    executor = 'slurm' 
    queue = "queue"
    maxForks = 90 // https://www.nextflow.io/docs/latest/process.html#maxforks
}

executor {
    queueSize = 100 // https://www.nextflow.io/docs/latest/config.html#scope-executor
}

docker {
    process.container = 'jason-c-kwan/autometa'
    docker.enabled = true
    singularity.enabled = false
    podman.enabled = false
    shifter.enabled = false
    charliecloud.enabled = false
    fixOwnership = true
  }
@chasemc chasemc added enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code labels May 24, 2021
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Labels
enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code
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