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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

0.5.4 - 2024-07-30

Changed

  • Bump zarrs to 0.16.0

Fixed

  • Fixed zarrs_reencode with --shard-shape applying existing array-to-array and bytes-to-bytes codecs as both inner and outer codecs

0.5.3 - 2024-07-24

Added

  • Add ome_zarr_metadata dependency for OME-Zarr metadata serialisation

Changed

  • zarrs_reencode: revise output and update docs
  • Update benchmarks and add plots
  • Make the help clearer for valid chunk key encoding separators in various tools

0.5.2 - 2024-07-10

Changed

  • Add --dimension-names arg to zarrs_filter, zarrs_ome, zarrs_reencode to change dimension names

Fixed

  • Remove unused http feature from zarrs dependency

0.5.1 - 2024-07-07

Added

  • zarrs_info: add group metadata support

Changed

  • Bump zarrs to 0.15.0
  • Add HTTP store support to most benchmark binaries/scripts

0.5.0 - 2024-07-02

Added

  • Add zarrs_info (requires info feature): returns information about a Zarr array to stdout (JSON encoded)
    • Metadata
    • Array shape, data type, fill value, dimension names, attributes, etc.
    • Value range
    • Histogram

Changed

  • Bump zarrs to 0.15.0-beta.1
  • Bump rayon to 1.10.0
  • Bump itertools to 0.13
  • zarrs_ome: add --version arg, supporting 0.5-dev or 0.5-dev1
  • Change zarrs_ome default output behaviour to erase
  • Update benchmarks to use zarrs 0.15.0-beta.1

0.4.2 - 2024-05-16

Changed

  • Bump zarrs to 0.14.0
  • Disable concurrent netCDF block processing in zarrs_ncvar2zarr

0.4.1 - 2024-05-06

Changed

  • Replace --no_overwrite with --exists in zarrs_filter and zarrs_ome
    • Both support erase and exit options
    • zarrs_ome also supports an overwrite option
  • zarrs_{ncvar,binary}2zarr output size change in human readable bytes
  • Change zarrs_{filter,ome} to multi progress bars
  • Print input path with zarrs_{ncva2zarr,ome}
  • Add bytes codec to encoding/reencoding help

Removed

  • Remove --hide-progress from zarrs_filter

0.4.0 - 2024-04-20

Added

  • zarrs_filter: apply simple image filters (transformations) to an array
  • zarrs_ome: convert an array to OME-Zarr
  • Add --endianness option to zarrs_binary2zarr

Changed

  • Breaking: put various tools behind feature flags
  • Bump rayon_iter_concurrent_limit to 0.2.0
  • Various minor fixes to clap help
  • zarrs_reencode: add --attributes-append to re-encoding options
  • Bump zarrs to 0.13.0
  • Breaking: Bump MSRV to 1.75

0.3.0 - 2024-02-22

Added

  • Add benchmark data generator: scripts/generate_benchmark_array.py
  • Add benchmark runners: scripts/run_benchmark_read_{all,chunks}.py
  • Add tensorstore benchmark script

Changed

  • Bump cargo-dist to to 0.10.0
  • zarrs_benchmark_read_{sync,async}, zarrs_binary2zarr, zarrs_reencode
    • Make --concurrent-chunks optional, choosing optimal by default
  • zarrs_ncvar2zarr
    • Change --num-parallel-blocks to --concurrent-blocks and make it optional
    • Remove --no-parallel-codecs
  • Improve internal concurrency
  • Update benchmarks with zarrs v0.12.0
  • Update dependencies

0.2.3 - 2024-02-06

Added

  • --ignore_checksums argument to zarrs_reencode and zarrs_benchmark_read_{sync,async}
    • See the relevant zarrs docs on fixing errant arrays encoded with old zarrs/zarrs_tools versions

Changed

  • Bump zarrs to 0.11.6

0.2.2 - 2024-02-02

Added

  • Use cargo-dist for releases

Changed

  • Bump dependencies
    • zarrs to 0.11.3

Fixed

  • Fix typos/errors in various docs files

0.2.1 - 2024-01-26

Changes

  • Bump zarrs to 0.11

0.2.0 - 2023-12-26

Changes

  • Bump zarrs to 0.8.0
  • Increase MSRV to 1.71

0.1.1 - 2023-12-11

Changes

  • Bump zarrs to 0.7.1 to fix build with rust<1.74

0.1.0 - 2023-12-05

Added

  • Initial public release