Reorganise project

Author: Ludovic Claude

Guidelines.md

@@ -36,7 +36,7 @@ Step-by-Step Guidelines
 2.  **Clone** the *functions-repository* folder -
     <https://github.com/LREN-CHUV/functions-repository>
 
-3.  In your clone, **go to** *mip\_node*
+3.  **Go to** the root folder of your cloned project
 
 4.  **Make a copy** of *r-summary-stats* directory and rename it into
     the name of your algorithm (r-…)
@@ -54,7 +54,7 @@ Step-by-Step Guidelines
 
        ii. If your package is available on GitHub, use:
 
-            RUN installGithub.r &lt;github coordinates&gt; where the Github
+            RUN installGithub.r <github coordinates> where the Github
             coordinates look like username/projectname, and optionally add a @
             sign followed by the Git version to use, for example
             LREN-CHUV/hbpsummarystats@6f6a42e

build.sh

@@ -14,7 +14,7 @@ get_script_dir () {
 
 ROOT_DIR="$(get_script_dir)"
 
-IMAGES="mip_node/r-summary-stats mip_node/r-linear-regression mip_federation/r-summary-stats mip_federation/r-linear-regression"
+IMAGES="r-summary-stats r-linear-regression"
 
 for image in $IMAGES ; do
   cd $ROOT_DIR/$image

cleanup.sh

@@ -13,7 +13,7 @@ fi
 if [[ "$tag" == "" ]]; then
     echo "Usage: ./cleanup.sh <tag>"
     echo "where tag can be one of:"
-    $DOCKER images | grep "registry.federation.mip.hbp/mip_(node|federation)" | awk '{print $2}' | sort | uniq
+    $DOCKER images | grep "hbpmip/" | awk '{print $2}' | sort | uniq
     exit 1
 fi
 
@@ -22,7 +22,7 @@ $DOCKER ps -q -f status=exited | xargs --no-run-if-empty $DOCKER rm
 
 # Remove tagged images
 for t in $tag; do
-  $DOCKER images | grep "registry.federation.mip.hbp/" | grep $t | cut -d' ' -f1 | sed -e "s/$/:$t/" | xargs --no-run-if-empty docker rmi
+  $DOCKER images | grep "hbpmip/" | grep $t | cut -d' ' -f1 | sed -e "s/$/:$t/" | xargs --no-run-if-empty docker rmi
 done
 
 # Remove anomymous images