Dockerfile

# This is an alpine linux installation for implementation of LSDTopoTools
# Please see documentation
# https://lsdtopotools.github.io/LSDTT_documentation/
# This container can be found at
# https://hub.docker.com/r/lsdtopotools/lsdtt_alpine_docker/
# It is a lightweight distribution, for the full LSDTopoTools distribution, 
# please see https://github.com/LSDtopotools/lsdtt_pcl_docker

FROM alpine
MAINTAINER Simon Mudd (simon.m.mudd@ed.ac.uk) and Fiona Clubb (clubb@uni-potsdam.de)

# install essential packages
RUN apk upgrade -U && \
    apk update && \
    apk add bash && \
    apk add --virtual build-dependencies build-base gcc wget unzip tzdata git && \
    apk add fftw-dev cmake && \
    rm -rf /var/cache/apk/* && \
    rm -rf /tmp/*
    
RUN apk add \ 
    --no-cache \
    --repository http://dl-cdn.alpinelinux.org/alpine/edge/testing \
    --repository http://dl-cdn.alpinelinux.org/alpine/edge/main \
    gdal py3-gdal
    
# Now an incredibly stupid fix to get libproj.so to work
#RUN ln -s /usr/lib/libproj.so.15 /usr/lib/libproj.so

# update to avoid weird apk error 
RUN apk update

# Add an LSDTopoTools working directory
WORKDIR /LSDTopoTools/

# Copy the startup script
COPY Start_LSDTT.sh /usr/local/bin/
RUN chmod +x /usr/local/bin/Start_LSDTT.sh

# Copy the script for fetching example data 
COPY Get_LSDTT_example_data.sh /usr/local/bin/
RUN chmod +x /usr/local/bin/Get_LSDTT_example_data.sh

# Get MuddPILE
RUN wget https://raw.githubusercontent.com/LSDtopotools/MuddPILE/master/bin/LSDTT_Alpine/MuddPILEdriver.out
RUN mv MuddPILEdriver.out /usr/local/bin/
RUN chmod +x /usr/local/bin/MuddPILEdriver.out