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transcriptome_alignment_unsupported_transcripts.txt
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transcriptome_alignment_unsupported_transcripts.txt
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# Generated Thu, 05 Sep 2013 15:30:29 +0200 by ./mm10_transcript_positions_create.php
# Transcriptome alignment to the genome taken from /home/ifokkema/tmp/ele/RefseqFASTA_mapped-to-genome_maxpath_2.sam.
# Transcript Reason_for_failure
NM_001001177.2 bad_alignment:D
NM_001001327.1 bad_alignment:D
NM_001004145.2 chimeric
NM_001005477.1 bad_alignment:IIIDDD
NM_001005780.1 bad_alignment:I
NM_001007552.1 bad_alignment:I
NM_001012623.1 bad_alignment:DIDDID
NM_001012624.1 bad_alignment:DIDDID
NM_001012625.1 bad_alignment:DIDDID
NM_001013802.3 bad_alignment:IDDDD
NM_001013804.1 chimeric
NM_001013817.2 weird_alignment:chr1_GL456221_random
NM_001013820.3 bad_alignment:D
NM_001013828.2 chimeric
NM_001014394.2 bad_alignment:D
NM_001024478.1 bad_alignment:D
NM_001025208.1 bad_alignment:I
NM_001030293.2 weird_alignment:chrX_GL456233_random
NM_001031622.2 weird_alignment:chr5_JH584299_random
NM_001033163.3 bad_alignment:IDD
NM_001033326.2 weird_alignment:chr4_GL456216_random
NM_001033330.2 bad_alignment:DID
NM_001033460.3 bad_alignment:I
NM_001033764.3 bad_alignment:D
NM_001033795.4 bad_alignment:DII
NM_001033875.2 bad_alignment:I
NM_001033980.2 bad_alignment:I
NM_001034013.2 bad_alignment:DII
NM_001034899.3 bad_alignment:DI
NM_001035239.2 bad_alignment:IIDDI
NM_001035240.2 bad_alignment:IIDDI
NM_001035241.2 bad_alignment:IIDDI
NM_001035242.1 bad_alignment:IIDDI
NM_001035243.2 bad_alignment:IIDDI
NM_001037716.2 bad_alignment:D
NM_001039073.2 bad_alignment:D
NM_001039074.2 bad_alignment:D
NM_001039241.2 chimeric
NM_001039688.3 bad_alignment:DD
NM_001039941.2 bad_alignment:I
NM_001039942.2 bad_alignment:D
NM_001039943.2 bad_alignment:I
NM_001039944.2 bad_alignment:I
NM_001040395.3 bad_alignment:D
NM_001047435.1 bad_alignment:D
NM_001047436.1 bad_alignment:D
NM_001076554.2 bad_alignment:D
NM_001076791.2 bad_alignment:ID
NM_001077507.1 bad_alignment:D
NM_001077510.2 bad_alignment:D
NM_001078649.1 bad_alignment:D
NM_001079690.1 bad_alignment:I
NM_001080126.1 bad_alignment:DI
NM_001081177.1 bad_alignment:I
NM_001081258.1 bad_alignment:ID
NM_001081276.1 bad_alignment:I
NM_001081317.1 bad_alignment:D
NM_001081340.2 bad_alignment:D
NM_001081346.1 bad_alignment:I
NM_001081357.1 bad_alignment:I
NM_001081361.1 bad_alignment:I
NM_001081490.1 bad_alignment:I
NM_001081684.1 bad_alignment:I
NM_001081685.1 bad_alignment:I
NM_001082531.1 bad_alignment:D
NM_001083188.1 bad_alignment:D
NM_001083918.1 bad_alignment:D
NM_001083927.1 bad_alignment:I
NM_001083928.1 bad_alignment:I
NM_001085385.1 bad_alignment:D
NM_001085410.1 bad_alignment:D
NM_001085522.2 bad_alignment:I
NM_001093764.1 bad_alignment:D
NM_001093765.1 bad_alignment:D
NM_001093766.1 bad_alignment:D
NM_001097623.1 bad_alignment:D
NM_001099628.1 bad_alignment:D
NM_001099920.1 bad_alignment:D
NM_001104634.1 chimeric
NM_001109764.1 bad_alignment:DDD
NM_001109989.2 bad_alignment:DD
NM_001110504.1 bad_alignment:I
NM_001111016.1 bad_alignment:D
NM_001111102.2 bad_alignment:ID
NM_001112700.1 bad_alignment:D
NM_001112722.1 bad_alignment:D
NM_001113352.1 bad_alignment:DD
NM_001113353.1 bad_alignment:DD
NM_001113468.1 bad_alignment:I
NM_001113470.1 bad_alignment:DI
NM_001114400.2 bad_alignment:DDI
NM_001114665.1 bad_alignment:D
NM_001122668.1 weird_alignment:chr5_GL456354_random
NM_001123394.2 bad_alignment:D
NM_001126488.2 bad_alignment:D
NM_001127353.2 bad_alignment:D
NM_001130176.1 bad_alignment:D
NM_001130177.2 bad_alignment:D
NM_001130178.2 bad_alignment:I
NM_001130179.2 bad_alignment:I
NM_001130180.2 bad_alignment:D
NM_001130181.2 bad_alignment:D
NM_001134300.2 bad_alignment:D
NM_001135127.2 bad_alignment:D
NM_001136065.1 bad_alignment:D
NM_001136072.2 bad_alignment:D
NM_001142322.1 bad_alignment:D
NM_001142323.1 bad_alignment:D
NM_001142742.1 bad_alignment:D
NM_001142743.1 bad_alignment:I
NM_001142746.1 bad_alignment:D
NM_001142747.1 bad_alignment:D
NM_001142960.1 bad_alignment:DI
NM_001145403.1 bad_alignment:D
NM_001145826.1 bad_alignment:DI
NM_001145965.1 bad_alignment:D
NM_001146215.1 bad_alignment:D
NM_001159393.1 bad_alignment:D
NM_001159509.1 bad_alignment:IDD
NM_001159567.1 bad_alignment:D
NM_001159568.1 bad_alignment:D
NM_001160139.1 bad_alignment:IID
NM_001160410.1 bad_alignment:D
NM_001161769.1 bad_alignment:D
NM_001163024.1 bad_alignment:D
NM_001163154.1 bad_alignment:I
NM_001163155.1 bad_alignment:I
NM_001163415.1 chimeric
NM_001163614.1 bad_alignment:DDI
NM_001163730.2 bad_alignment:DII
NM_001163919.1 bad_alignment:DDI
NM_001164186.1 bad_alignment:DD
NM_001164376.1 bad_alignment:DII
NM_001164519.1 bad_alignment:DII
NM_001164682.1 bad_alignment:DD
NM_001166372.1 bad_alignment:DI
NM_001166399.2 bad_alignment:D
NM_001166556.1 bad_alignment:D
NM_001166557.1 bad_alignment:D
NM_001167777.1 bad_alignment:D
NM_001167976.1 bad_alignment:II
NM_001168602.1 bad_alignment:DDI
NM_001170745.1 bad_alignment:DI
NM_001170748.1 bad_alignment:I
NM_001174074.1 bad_alignment:D
NM_001174078.1 bad_alignment:DDII
NM_001174079.1 bad_alignment:DDII
NM_001174154.1 bad_alignment:D
NM_001177416.1 bad_alignment:ID
NM_001177417.1 bad_alignment:D
NM_001177523.1 bad_alignment:D
NM_001177659.1 bad_alignment:I
NM_001177667.1 bad_alignment:D
NM_001177668.1 bad_alignment:D
NM_001177673.1 bad_alignment:IDD
NM_001177767.1 bad_alignment:DIDIDD
NM_001190187.1 bad_alignment:DIII
NM_001190188.1 bad_alignment:DIII
NM_001190454.1 bad_alignment:D
NM_001190911.1 bad_alignment:II
NM_001190912.1 bad_alignment:I
NM_001190913.1 bad_alignment:II
NM_001190914.1 bad_alignment:DIID
NM_001198866.1 bad_alignment:ID
NM_001198987.2 bad_alignment:DI
NM_001198998.1 bad_alignment:D
NM_001199242.1 chimeric
NM_001199243.1 chimeric
NM_001199244.1 bad_alignment:II
NM_001199310.1 bad_alignment:D
NM_001199332.1 chimeric
NM_001199350.1 bad_alignment:D
NM_001200055.1 weird_alignment:chr5_JH584299_random
NM_001201389.1 bad_alignment:D
NM_001204201.1 bad_alignment:D
NM_001204203.1 bad_alignment:D
NM_001204915.1 bad_alignment:D
NM_001205367.1 bad_alignment:I
NM_001206849.1 bad_alignment:I
NM_001206926.1 bad_alignment:IDI
NM_001243117.1 bad_alignment:I
NM_001243118.1 bad_alignment:I
NM_001243119.1 bad_alignment:I
NM_001244952.1 bad_alignment:ID
NM_001252149.1 bad_alignment:D
NM_001252472.1 bad_alignment:D
NM_001252653.1 bad_alignment:I
NM_001253796.1 bad_alignment:I
NM_001253885.1 bad_alignment:DI
NM_001253887.1 bad_alignment:DII
NM_001256112.1 bad_alignment:I
NM_001256489.1 bad_alignment:DD
NM_001267808.1 bad_alignment:DD
NM_001270791.1 bad_alignment:D
NM_001270988.1 bad_alignment:D
NM_001271586.1 bad_alignment:I
NM_001271730.1 bad_alignment:D
NM_001271798.1 bad_alignment:D
NM_001271799.1 bad_alignment:D
NM_001277903.1 bad_alignment:I
NM_001277904.1 bad_alignment:I
NM_001277926.1 bad_alignment:DI
NM_001277954.1 bad_alignment:DDIDIDI
NM_001277955.1 bad_alignment:DDIDIDI
NM_001277982.1 bad_alignment:IID
NM_001277986.1 bad_alignment:IID
NM_001278161.1 bad_alignment:ID
NM_007474.2 bad_alignment:I
NM_007490.1 bad_alignment:I
NM_007600.3 bad_alignment:I
NM_007640.2 bad_alignment:I
NM_007648.4 bad_alignment:I
NM_007736.4 bad_alignment:I
NM_007737.2 bad_alignment:D
NM_007835.2 bad_alignment:ID
NM_007849.1 chimeric
NM_007899.2 bad_alignment:I
NM_007955.3 bad_alignment:DDDI
NM_007960.4 bad_alignment:I
NM_008247.2 bad_alignment:D
NM_008264.1 bad_alignment:IDI
NM_008324.1 bad_alignment:I
NM_008390.2 bad_alignment:D
NM_008406.3 bad_alignment:I
NM_008461.2 bad_alignment:D
NM_008551.1 bad_alignment:I
NM_008653.2 bad_alignment:II
NM_008710.3 bad_alignment:DD
NM_008734.3 bad_alignment:DIII
NM_008783.2 bad_alignment:D
NM_008798.2 bad_alignment:II
NM_008847.2 bad_alignment:D
NM_008848.1 chimeric
NM_008850.1 bad_alignment:I
NM_009016.1 bad_alignment:I
NM_009017.1 bad_alignment:I
NM_009018.1 bad_alignment:I
NM_009027.3 bad_alignment:IIDIIIIDDD
NM_009109.2 bad_alignment:D
NM_009115.3 bad_alignment:DI
NM_009173.1 bad_alignment:ID
NM_009251.1 chimeric
NM_009268.1 bad_alignment:II
NM_009293.1 no_alignment
NM_009389.2 bad_alignment:I
NM_009406.3 bad_alignment:D
NM_009444.1 bad_alignment:DIDII
NM_009485.1 weird_alignment:chr4_JH584292_random
NM_009488.2 weird_alignment:chr4_JH584292_random
NM_009492.2 weird_alignment:chr4_JH584292_random
NM_009686.2 bad_alignment:D
NM_009744.3 chimeric
NM_009819.2 bad_alignment:DDD
NM_009838.2 bad_alignment:IIII
NM_009845.3 bad_alignment:D
NM_009946.2 bad_alignment:DI
NM_010031.2 bad_alignment:II
NM_010039.1 bad_alignment:D
NM_010075.2 bad_alignment:III
NM_010078.3 bad_alignment:D
NM_010115.6 bad_alignment:I
NM_010381.2 chimeric
NM_010395.7 bad_alignment:IIIDIIIDI
NM_010581.3 bad_alignment:D
NM_010646.1 bad_alignment:D
NM_010707.2 bad_alignment:D
NM_010715.2 bad_alignment:D
NM_010825.3 bad_alignment:D
NM_010844.1 bad_alignment:D
NM_010846.1 bad_alignment:I
NM_010881.2 bad_alignment:D
NM_010974.1 bad_alignment:I
NM_011087.1 chimeric
NM_011088.1 bad_alignment:DI
NM_011091.1 bad_alignment:D
NM_011093.1 chimeric
NM_011094.1 bad_alignment:I
NM_011102.3 bad_alignment:I
NM_011151.2 bad_alignment:D
NM_011154.2 chimeric
NM_011180.3 bad_alignment:D
NM_011181.3 bad_alignment:D
NM_011211.3 bad_alignment:ID
NM_011348.2 bad_alignment:I
NM_011364.3 bad_alignment:D
NM_011390.2 bad_alignment:D
NM_011413.2 bad_alignment:I
NM_011417.3 bad_alignment:DDII
NM_011431.3 bad_alignment:D
NM_011459.4 bad_alignment:DDII
NM_011515.4 weird_alignment:chrX_GL456233_random
NM_011618.2 bad_alignment:I
NM_011619.3 bad_alignment:D
NM_011633.2 bad_alignment:DDD
NM_011856.3 bad_alignment:DDIIDID
NM_011864.3 bad_alignment:I
NM_011889.2 bad_alignment:DDII
NM_013489.3 bad_alignment:D
NM_013600.2 bad_alignment:D
NM_013606.1 bad_alignment:DDD
NM_013646.1 bad_alignment:I
NM_013669.2 bad_alignment:IID
NM_013694.4 bad_alignment:DID
NM_013755.2 bad_alignment:I
NM_013793.2 bad_alignment:DI
NM_013794.4 bad_alignment:IIDD
NM_015742.2 bad_alignment:D
NM_016879.2 bad_alignment:DIDI
NM_016928.2 bad_alignment:DDDD
NM_016969.2 bad_alignment:D
NM_017400.6 bad_alignment:DDIDIDI
NM_018756.2 bad_alignment:I
NM_019494.1 bad_alignment:I
NM_019654.2 bad_alignment:I
NM_019683.3 bad_alignment:D
NM_019695.2 bad_alignment:D
NM_019969.3 bad_alignment:D
NM_019994.4 bad_alignment:I
NM_020008.2 bad_alignment:ID
NM_020052.2 bad_alignment:D
NM_020333.2 bad_alignment:I
NM_021304.3 bad_alignment:D
NM_021427.2 bad_alignment:D
NM_021477.5 bad_alignment:IID
NM_021478.1 bad_alignment:ID
NM_021545.1 chimeric
NM_021714.4 bad_alignment:ID
NM_022554.3 bad_alignment:I
NM_023065.3 bad_alignment:D
NM_023115.3 bad_alignment:D
NM_023124.5 bad_alignment:D
NM_023566.3 bad_alignment:D
NM_023605.2 bad_alignment:I
NM_023872.3 bad_alignment:IID
NM_024223.2 bad_alignment:DI
NM_024291.3 bad_alignment:D
NM_025410.2 bad_alignment:D
NM_025534.2 bad_alignment:DDDD
NM_025576.2 bad_alignment:I
NM_025584.2 no_alignment
NM_025687.3 bad_alignment:I
NM_025827.3 bad_alignment:D
NM_025889.2 bad_alignment:D
NM_025988.2 bad_alignment:I
NM_026324.3 bad_alignment:II
NM_026483.2 bad_alignment:D
NM_026486.3 bad_alignment:I
NM_026601.3 bad_alignment:I
NM_026748.2 bad_alignment:I
NM_026939.1 bad_alignment:D
NM_027082.1 bad_alignment:D
NM_027121.3 bad_alignment:D
NM_027184.1 bad_alignment:D
NM_027211.2 bad_alignment:IDIDIID
NM_027249.2 bad_alignment:D
NM_027407.3 bad_alignment:ID
NM_027455.2 bad_alignment:DD
NM_027664.1 bad_alignment:D
NM_027700.1 bad_alignment:DI
NM_027860.2 bad_alignment:II
NM_027861.2 bad_alignment:I
NM_028166.3 bad_alignment:D
NM_028784.3 bad_alignment:I
NM_029330.2 bad_alignment:ID
NM_029349.1 bad_alignment:D
NM_029624.4 bad_alignment:DI
NM_029709.2 bad_alignment:I
NM_029759.4 bad_alignment:I
NM_029838.4 bad_alignment:ID
NM_030563.2 bad_alignment:D
NM_031156.3 chimeric
NM_031193.2 bad_alignment:D
NM_031367.1 bad_alignment:IDIIIDDI
NM_032006.3 bad_alignment:I
NM_033074.3 bad_alignment:D
NM_033217.3 bad_alignment:IDD
NM_033579.1 bad_alignment:DI
NM_033580.2 bad_alignment:DI
NM_033581.3 bad_alignment:DI
NM_033582.2 bad_alignment:DI
NM_033594.2 bad_alignment:DI
NM_033595.4 bad_alignment:DI
NM_033616.3 weird_alignment:chr1_GL456221_random
NM_053122.4 bad_alignment:DI
NM_053150.2 bad_alignment:IDI
NM_053151.1 bad_alignment:DDIII
NM_053152.2 bad_alignment:DDIID
NM_053153.2 bad_alignment:IID
NM_053154.2 bad_alignment:ID
NM_053244.5 bad_alignment:D
NM_053251.1 bad_alignment:DID
NM_053270.1 bad_alignment:DIDDID
NM_080457.3 bad_alignment:DD
NM_080856.4 bad_alignment:I
NM_133245.1 no_alignment
NM_133362.2 chimeric
NM_134195.2 bad_alignment:D
NM_138758.1 weird_alignment:chrX_GL456233_random
NM_139227.4 bad_alignment:DDI
NM_144867.2 bad_alignment:DDDIII
NM_144906.1 bad_alignment:DD
NM_145143.3 bad_alignment:DD
NM_145456.2 bad_alignment:D
NM_145468.1 bad_alignment:D
NM_145732.2 bad_alignment:DDD
NM_145942.4 bad_alignment:I
NM_145949.2 bad_alignment:D
NM_146012.2 bad_alignment:DI
NM_146412.2 bad_alignment:D
NM_146484.1 bad_alignment:I
NM_146872.1 bad_alignment:I
NM_146959.2 bad_alignment:DDD
NM_146993.1 bad_alignment:I
NM_147013.2 bad_alignment:I
NM_147218.2 bad_alignment:D
NM_147779.1 bad_alignment:IIDDI
NM_153098.3 bad_alignment:DI
NM_153099.1 bad_alignment:DDII
NM_153100.2 bad_alignment:I
NM_153154.2 bad_alignment:D
NM_153196.1 bad_alignment:D
NM_172421.5 bad_alignment:D
NM_172467.3 bad_alignment:ID
NM_172505.4 bad_alignment:D
NM_172590.3 bad_alignment:I
NM_172622.2 bad_alignment:D
NM_172709.3 bad_alignment:D
NM_172710.3 bad_alignment:D
NM_172799.4 bad_alignment:D
NM_172910.3 bad_alignment:D
NM_173187.3 bad_alignment:D
NM_173189.2 bad_alignment:DDDII
NM_173437.2 bad_alignment:D
NM_173783.3 bad_alignment:I
NM_173785.6 bad_alignment:D
NM_174853.2 bad_alignment:D
NM_174854.2 bad_alignment:D
NM_175188.4 bad_alignment:DI
NM_175252.4 bad_alignment:IDDDDIDD
NM_175270.4 bad_alignment:IIDD
NM_175272.3 bad_alignment:D
NM_175313.4 bad_alignment:IIDD
NM_175428.3 bad_alignment:I
NM_175462.3 bad_alignment:D
NM_175493.4 bad_alignment:IDD
NM_175513.3 bad_alignment:DI
NM_177010.3 chimeric
NM_177047.3 bad_alignment:I
NM_177135.4 bad_alignment:II
NM_177261.4 bad_alignment:D
NM_177312.4 bad_alignment:D
NM_177372.3 bad_alignment:DD
NM_177389.3 bad_alignment:IDD
NM_177548.2 bad_alignment:I
NM_177577.3 bad_alignment:DDI
NM_177612.3 bad_alignment:DII
NM_177615.3 bad_alignment:ID
NM_177913.4 weird_alignment:chr5_GL456354_random
NM_178606.5 bad_alignment:D
NM_178620.3 bad_alignment:D
NM_178668.3 bad_alignment:D
NM_178721.4 bad_alignment:I
NM_178893.4 bad_alignment:IIIDDD
NM_181729.2 chimeric
NM_183018.2 bad_alignment:DIDDID
NM_183354.2 bad_alignment:I
NM_183355.2 bad_alignment:D
NM_198602.2 bad_alignment:D
NM_198711.3 bad_alignment:ID
NM_201363.2 bad_alignment:IIDDD
NM_201519.2 bad_alignment:D
NM_205821.2 bad_alignment:D
NM_207149.2 bad_alignment:D
NM_207233.1 bad_alignment:D
NM_207535.1 bad_alignment:I
NM_207549.1 bad_alignment:D
NM_207664.2 bad_alignment:I
NM_207683.2 bad_alignment:DIDDD
NR_002845.1 no_alignment
NR_002875.2 bad_alignment:D
NR_002880.1 bad_alignment:D
NR_003278.3 bad_alignment:IDDIDI
NR_003518.2 weird_alignment:chrUn_JH584304
NR_003547.2 weird_alignment:chrX_GL456233_random
NR_004429.1 bad_alignment:I
NR_015516.2 chimeric
NR_021486.1 bad_alignment:I
NR_024198.2 bad_alignment:I
NR_027950.2 bad_alignment:D
NR_027975.2 bad_alignment:D
NR_029585.1 bad_alignment:D
NR_030470.1 bad_alignment:D
NR_033398.1 bad_alignment:D
NR_033506.1 weird_alignment:chr4_JH584293_random
NR_035408.1 bad_alignment:D
NR_038043.1 bad_alignment:D
NR_038061.1 bad_alignment:D
NR_038297.1 bad_alignment:D
NR_038298.1 bad_alignment:D
NR_040291.1 bad_alignment:DDIID
NR_040530.1 bad_alignment:D
NR_040536.1 bad_alignment:D
NR_040557.1 bad_alignment:I
NR_040745.1 bad_alignment:DD
NR_045299.1 bad_alignment:I
NR_045379.1 bad_alignment:DDI
NR_045668.1 bad_alignment:D
NR_045905.1 bad_alignment:D
NR_073559.1 bad_alignment:D
NR_075104.1 bad_alignment:D
NR_102721.1 chimeric
NR_102729.1 bad_alignment:IID
XM_001472033.3 weird_alignment:chr5_JH584299_random
XM_001472058.2 weird_alignment:chr1_GL456221_random
XM_001472151.3 weird_alignment:chr5_JH584299_random
XM_001472176.3 bad_alignment:I
XM_001472622.3 bad_alignment:DI
XM_001473258.3 bad_alignment:I
XM_001473415.1 bad_alignment:D
XM_001473465.2 bad_alignment:IIIDDID
XM_001473694.2 bad_alignment:DI
XM_001473695.4 bad_alignment:DD
XM_001473711.2 weird_alignment:chr5_JH584299_random
XM_001473726.2 weird_alignment:chr5_JH584299_random
XM_001473873.2 bad_alignment:DII
XM_001474160.2 bad_alignment:I
XM_001474200.3 bad_alignment:III
XM_001474564.3 bad_alignment:ID
XM_001475146.4 bad_alignment:I
XM_001475455.2 weird_alignment:chrY_JH584300_random
XM_001475533.2 bad_alignment:I
XM_001475610.2 chimeric
XM_001475637.3 weird_alignment:chr1_GL456211_random
XM_001475666.2 bad_alignment:IDID
XM_001476015.2 weird_alignment:chrY_JH584300_random
XM_001476397.2 weird_alignment:chr5_JH584299_random
XM_001476414.2 weird_alignment:chr5_JH584299_random
XM_001476529.3 bad_alignment:I
XM_001476568.3 bad_alignment:IDIDIII
XM_001476895.4 bad_alignment:I
XM_001477139.2 bad_alignment:D
XM_001477166.2 weird_alignment:chrY_JH584300_random
XM_001477192.2 bad_alignment:I
XM_001477688.2 weird_alignment:chrY_JH584300_random
XM_001477711.2 weird_alignment:chr1_GL456212_random
XM_001477746.2 bad_alignment:D
XM_001477780.2 bad_alignment:I
XM_001478071.2 bad_alignment:D
XM_001478485.2 bad_alignment:DDIDD
XM_001478694.4 bad_alignment:IIDD
XM_001478962.2 chimeric
XM_001479073.4 bad_alignment:D
XM_001479167.4 bad_alignment:D
XM_001479371.4 chimeric
XM_001479591.4 bad_alignment:IID
XM_001479706.3 bad_alignment:DDI
XM_001480825.1 bad_alignment:DD
XM_001481101.2 no_alignment
XM_001481236.2 chimeric
XM_001481303.4 bad_alignment:D
XM_001481310.2 bad_alignment:IIDDDDD
XM_001481325.2 bad_alignment:I
XM_001481329.4 bad_alignment:D
XM_001481332.2 bad_alignment:I
XM_001487796.4 bad_alignment:IDDIDI
XM_001487797.3 bad_alignment:D
XM_003084464.2 bad_alignment:D
XM_003084551.3 bad_alignment:D
XM_003084652.1 bad_alignment:D
XM_003084742.3 bad_alignment:DD
XM_003085056.2 bad_alignment:II
XM_003085120.2 bad_alignment:IIIDIIIDIDIDIDIDDDIDDDDIDIIDIIDI
XM_003085151.2 bad_alignment:I
XM_003085153.2 bad_alignment:D
XM_003085264.1 bad_alignment:D
XM_003085465.1 bad_alignment:DD
XM_003085466.1 bad_alignment:II
XM_003085506.1 bad_alignment:DDI
XM_003085534.2 weird_alignment:chr1_GL456211_random
XM_003085535.2 weird_alignment:chr1_GL456211_random
XM_003085556.1 bad_alignment:I
XM_003085647.1 weird_alignment:chr5_GL456354_random
XM_003085648.1 weird_alignment:chr5_GL456354_random
XM_003085693.1 bad_alignment:IIDIIIDDDID
XM_003085696.1 bad_alignment:D
XM_003085801.2 bad_alignment:I
XM_003085822.2 bad_alignment:DI
XM_003085853.1 chimeric
XM_003085861.1 bad_alignment:I
XM_003085875.1 bad_alignment:D
XM_003085914.1 bad_alignment:D
XM_003085917.2 bad_alignment:DDD
XM_003085945.1 bad_alignment:II
XM_003085949.1 bad_alignment:DI
XM_003085964.2 bad_alignment:II
XM_003086066.2 chimeric
XM_003086067.1 bad_alignment:D
XM_003086086.2 bad_alignment:D
XM_003086143.1 bad_alignment:I
XM_003086175.1 bad_alignment:D
XM_003086216.2 bad_alignment:I
XM_003086272.1 bad_alignment:I
XM_003086276.2 bad_alignment:D
XM_003086293.1 bad_alignment:I
XM_003086309.1 chimeric
XM_003086329.1 bad_alignment:I
XM_003086430.1 bad_alignment:DDI
XM_003086463.1 bad_alignment:I
XM_003086465.2 chimeric
XM_003086466.2 bad_alignment:IDDDDIIDIIDDDIIIDDDDDIDDDDDIDDDDIIIDDIIIDDIID
XM_003086474.2 bad_alignment:ID
XM_003086502.1 bad_alignment:IDDDDI
XM_003086503.1 bad_alignment:DDDD
XM_003086506.2 bad_alignment:DI
XM_003086515.1 bad_alignment:D
XM_003086531.2 bad_alignment:D
XM_003086587.1 bad_alignment:I
XM_003086590.3 bad_alignment:I
XM_003086644.1 bad_alignment:I
XM_003086659.1 bad_alignment:IID
XM_003086661.1 bad_alignment:I
XM_003086755.1 bad_alignment:IID
XM_003086771.1 bad_alignment:IDIID
XM_003086773.1 bad_alignment:IDIID
XM_003086775.1 bad_alignment:IDIID
XM_003086776.1 bad_alignment:IIDIID
XM_003086777.1 bad_alignment:IDIIID
XM_003086788.1 no_alignment
XM_003086790.1 bad_alignment:D
XM_003086802.2 no_alignment
XM_003086807.1 bad_alignment:D
XM_003086810.1 bad_alignment:DD
XM_003086812.3 bad_alignment:IDD
XM_003086828.2 bad_alignment:D
XM_003086832.1 bad_alignment:DD
XM_003086863.2 bad_alignment:D
XM_003086870.2 bad_alignment:D
XM_003086873.1 bad_alignment:ID
XM_003086907.1 bad_alignment:D
XM_003086909.1 bad_alignment:IID
XM_003086951.2 bad_alignment:I
XM_003086957.1 chimeric
XM_003688734.1 bad_alignment:I
XM_003688745.2 bad_alignment:ID
XM_003688750.1 bad_alignment:I
XM_003688754.2 chimeric
XM_003688755.1 bad_alignment:II
XM_003688760.2 chimeric
XM_003688763.2 chimeric
XM_003688766.2 chimeric
XM_003688779.2 bad_alignment:DDIIIIDDD
XM_003688801.1 bad_alignment:DD
XM_003688812.1 bad_alignment:DI
XM_003688822.2 chimeric
XM_003688905.1 bad_alignment:I
XM_003688921.1 bad_alignment:I
XM_003688927.2 bad_alignment:I
XM_003688949.2 bad_alignment:I
XM_003688975.1 bad_alignment:D
XM_003689004.2 bad_alignment:D
XM_003689079.1 weird_alignment:chrY_JH584300_random
XM_003689142.2 weird_alignment:chr5_JH584296_random
XM_003689144.1 weird_alignment:chr5_JH584297_random
XM_003689146.1 weird_alignment:chr5_JH584297_random
XM_003689147.1 weird_alignment:chr5_JH584297_random
XM_003689148.1 weird_alignment:chr5_JH584297_random
XM_003689149.1 weird_alignment:chr5_JH584297_random
XM_003689150.1 weird_alignment:chr5_JH584299_random
XM_003689151.1 weird_alignment:chr5_JH584299_random
XM_003689156.1 weird_alignment:chr5_JH584299_random
XM_003689160.1 weird_alignment:chrY_JH584300_random
XM_003689171.2 bad_alignment:I
XM_003689176.2 bad_alignment:IDDIIIDD
XM_003689183.1 bad_alignment:DDDIIIDI
XM_003689210.1 bad_alignment:I
XM_003689214.2 chimeric
XM_003689215.1 bad_alignment:II
XM_003689220.1 chimeric
XM_003689223.1 chimeric
XM_003689226.2 chimeric
XM_003689233.2 weird_alignment:chr1_GL456210_random
XM_003689247.2 bad_alignment:D
XM_003689251.1 bad_alignment:D
XM_003689268.1 bad_alignment:DII
XM_003689273.2 chimeric
XM_003689291.1 bad_alignment:I
XM_003689292.1 chimeric
XM_003689309.1 bad_alignment:ID
XM_003689311.2 bad_alignment:I
XM_003689330.1 chimeric
XM_003689343.1 bad_alignment:I
XM_003689344.1 bad_alignment:D
XM_003689356.1 bad_alignment:DD
XM_003689363.1 weird_alignment:chr4_JH584292_random
XM_003689364.1 weird_alignment:chr4_JH584292_random
XM_003689365.1 weird_alignment:chr4_JH584292_random
XM_003689366.1 weird_alignment:chr4_JH584292_random
XM_003689367.1 weird_alignment:chr4_JH584292_random
XM_003689368.1 bad_alignment:I
XM_003689381.1 bad_alignment:D
XM_003689383.1 bad_alignment:D
XM_003689386.2 bad_alignment:III
XM_003689388.1 bad_alignment:D
XM_003689417.2 bad_alignment:D
XM_003689431.1 bad_alignment:I
XM_003689445.1 no_alignment
XM_003689459.1 bad_alignment:D
XM_003689460.2 bad_alignment:DD
XM_003689471.1 bad_alignment:I
XM_003689472.2 bad_alignment:ID
XM_003689476.1 weird_alignment:chrUn_GL456372
XM_003689479.2 chimeric
XM_003689480.1 chimeric
XM_003689489.1 bad_alignment:D
XM_003689498.1 bad_alignment:DIIIDI
XM_003945326.1 bad_alignment:D
XM_003945330.1 bad_alignment:D
XM_003945374.1 bad_alignment:DD
XM_003945410.1 bad_alignment:I
XM_003945411.1 bad_alignment:IIDIII
XM_003945412.1 bad_alignment:DDIIIDDIDIIDIDI
XM_003945430.1 bad_alignment:IIDDIDD
XM_003945433.1 bad_alignment:DIDIDDIDIID
XM_003945474.1 bad_alignment:DII
XM_003945476.1 bad_alignment:DI
XM_003945478.1 bad_alignment:I
XM_003945484.1 bad_alignment:I
XM_003945487.1 bad_alignment:I
XM_003945497.1 bad_alignment:I
XM_003945498.1 bad_alignment:ID
XM_003945499.1 bad_alignment:I
XM_003945514.1 bad_alignment:I
XM_003945530.1 bad_alignment:I
XM_003945536.1 bad_alignment:I
XM_003945554.1 bad_alignment:I
XM_003945580.1 bad_alignment:II
XM_003945599.1 bad_alignment:D
XM_003945603.1 bad_alignment:I
XM_003945606.1 bad_alignment:DI
XM_003945654.1 bad_alignment:D
XM_003945663.1 bad_alignment:DD
XM_003945669.1 bad_alignment:IDID
XM_003945671.1 bad_alignment:D
XM_003945674.1 weird_alignment:chr1_GL456210_random
XM_003945676.1 weird_alignment:chr1_GL456210_random
XM_003945677.1 weird_alignment:chr1_GL456211_random
XM_003945682.1 bad_alignment:DDIDI
XM_003945683.1 bad_alignment:IIII
XM_003945684.1 bad_alignment:IIIIID
XM_003945685.1 chimeric
XM_003945686.1 bad_alignment:I
XM_003945707.1 bad_alignment:II
XM_003945715.1 weird_alignment:chr5_GL456354_random
XM_003945717.1 bad_alignment:IDDD
XM_003945718.1 bad_alignment:IIDDD
XM_003945719.1 bad_alignment:IIDDD
XM_003945720.1 bad_alignment:IID
XM_003945721.1 bad_alignment:IIDID
XM_003945722.1 bad_alignment:IID
XM_003945729.1 bad_alignment:ID
XM_003945730.1 chimeric
XM_003945731.1 bad_alignment:IDIIDDDD
XM_003945732.1 bad_alignment:IDIIDDI
XM_003945733.1 chimeric
XM_003945734.1 chimeric
XM_003945735.1 bad_alignment:IDD
XM_003945736.1 bad_alignment:IDIIDDD
XM_003945738.1 bad_alignment:DIDD
XM_003945739.1 bad_alignment:D
XM_003945740.1 bad_alignment:DI
XM_003945741.1 bad_alignment:DIII
XM_003945742.1 bad_alignment:DIDI
XM_003945743.1 bad_alignment:D
XM_003945745.1 bad_alignment:IDIIDDDD
XM_003945747.1 bad_alignment:DIDD
XM_003945748.1 bad_alignment:DI
XM_003945749.1 bad_alignment:D
XM_003945795.1 bad_alignment:IIDDD
XM_003945845.1 weird_alignment:chr5_JH584299_random
XM_003945846.1 weird_alignment:chr5_JH584299_random
XM_003945847.1 weird_alignment:chr5_JH584299_random
XM_003945848.1 weird_alignment:chr5_JH584299_random
XM_003945851.1 bad_alignment:ID
XM_003945854.1 bad_alignment:I
XM_003945863.1 bad_alignment:DI
XM_003945865.1 bad_alignment:DD
XM_003945873.1 bad_alignment:II
XM_003945891.1 bad_alignment:D
XM_003945898.1 bad_alignment:II
XM_003945906.1 bad_alignment:D
XM_003945910.1 bad_alignment:DDIDD
XM_003945912.1 bad_alignment:I
XM_003945915.1 bad_alignment:IDI
XM_003945930.1 bad_alignment:I
XM_003945932.1 bad_alignment:D
XM_003945935.1 bad_alignment:DI
XM_003945938.1 bad_alignment:D
XM_003945940.1 bad_alignment:D
XM_003945944.1 bad_alignment:D
XM_003945946.1 bad_alignment:I
XM_003945947.1 bad_alignment:I
XM_003945951.1 bad_alignment:I
XM_003945953.1 bad_alignment:D
XM_003945957.1 bad_alignment:ID
XM_003945960.1 bad_alignment:D
XM_003945971.1 bad_alignment:D
XM_003945972.1 bad_alignment:DD
XM_003945987.1 bad_alignment:IDDDI
XM_003945988.1 bad_alignment:IIDDDII
XM_003945995.1 bad_alignment:II
XM_003945996.1 chimeric
XM_003945997.1 chimeric
XM_003945998.1 chimeric
XM_003945999.1 chimeric
XM_003946003.1 bad_alignment:D
XM_003946004.1 chimeric
XM_003946006.1 bad_alignment:III
XM_003946019.1 bad_alignment:ID
XM_003946021.1 bad_alignment:D
XM_003946023.1 chimeric
XM_003946024.1 bad_alignment:DII
XM_003946035.1 bad_alignment:II
XM_003946036.1 bad_alignment:ID
XM_003946038.1 bad_alignment:I
XM_003946039.1 bad_alignment:I
XM_003946040.1 bad_alignment:DI
XM_003946042.1 bad_alignment:III
XM_003946044.1 bad_alignment:II
XM_003946046.1 bad_alignment:IIDD
XM_003946047.1 bad_alignment:IIDI
XM_003946049.1 chimeric
XM_003946052.1 bad_alignment:II
XM_003946055.1 bad_alignment:DII
XM_003946056.1 bad_alignment:D
XM_003946066.1 bad_alignment:I
XM_003946072.1 bad_alignment:D
XM_003946086.1 bad_alignment:I
XM_003946087.1 bad_alignment:D
XM_003946088.1 bad_alignment:D
XM_003946090.1 bad_alignment:D
XM_003946091.1 bad_alignment:I
XM_003946097.1 chimeric
XM_003946103.1 bad_alignment:DD
XM_003946109.1 bad_alignment:I
XM_003946120.1 chimeric
XM_003946122.1 bad_alignment:I
XM_003946129.1 bad_alignment:II
XM_003946132.1 bad_alignment:I
XM_003946134.1 bad_alignment:I
XM_003946139.1 bad_alignment:DI
XM_003946142.1 bad_alignment:I
XM_003946144.1 bad_alignment:DIIIIDI
XM_003946145.1 bad_alignment:ID
XM_003946149.1 bad_alignment:D
XM_003946150.1 bad_alignment:I
XM_003946153.1 bad_alignment:IDD
XM_003946157.1 bad_alignment:D
XM_003946161.1 bad_alignment:D
XM_003946163.1 bad_alignment:I
XM_003946164.1 bad_alignment:D
XM_003946165.1 bad_alignment:D
XM_003946166.1 bad_alignment:D
XM_003946168.1 bad_alignment:D
XM_003946169.1 weird_alignment:chr5_JH584299_random
XM_003946185.1 chimeric
XM_003946187.1 bad_alignment:D
XM_003946189.1 bad_alignment:D
XM_003946193.1 bad_alignment:ID
XM_003946194.1 bad_alignment:D
XM_003946195.1 bad_alignment:DI
XM_003946196.1 bad_alignment:DID
XM_003946197.1 chimeric
XM_003946198.1 chimeric
XM_003946199.1 bad_alignment:DD
XM_003946202.1 bad_alignment:I
XM_003946205.1 bad_alignment:DDID
XM_003946209.1 bad_alignment:ID
XM_003946215.1 bad_alignment:I
XM_003946217.1 bad_alignment:DD
XM_003946228.1 bad_alignment:IDID
XM_003946230.1 bad_alignment:I
XM_003946231.1 bad_alignment:II
XM_003946236.1 bad_alignment:I
XM_003946238.1 bad_alignment:I
XM_003946241.1 bad_alignment:DDDD
XM_003946245.1 bad_alignment:D
XM_003946249.1 bad_alignment:D
XM_003946251.1 bad_alignment:I
XM_003946257.1 bad_alignment:DI
XM_003946264.1 bad_alignment:DI
XM_003946269.1 bad_alignment:ID
XM_003946273.1 bad_alignment:IID
XM_003946279.1 bad_alignment:DDIIDI
XM_003946288.1 bad_alignment:D
XM_003946291.1 bad_alignment:DDD
XM_003946306.1 bad_alignment:I
XM_003946318.1 chimeric
XM_003946323.1 bad_alignment:IDII
XM_003946324.1 chimeric
XM_003946326.1 bad_alignment:ID
XM_003946327.1 no_alignment
XM_003946328.1 bad_alignment:II
XM_003946330.1 no_alignment
XM_003946331.1 bad_alignment:IID
XM_003946335.1 bad_alignment:D
XM_003946339.1 bad_alignment:D
XM_003946340.1 no_alignment
XM_003946341.1 bad_alignment:DIIIIID
XM_003946342.1 chimeric
XM_003946344.1 bad_alignment:DDDDDIDIIDDDII
XM_003946345.1 bad_alignment:DD
XM_003946346.1 bad_alignment:D
XM_003946347.1 no_alignment
XM_003946348.1 bad_alignment:ID
XM_003946349.1 chimeric
XM_003946350.1 bad_alignment:I
XM_003946354.1 bad_alignment:D
XM_003946355.1 bad_alignment:I
XM_003946361.1 bad_alignment:DIDII
XM_003946368.1 bad_alignment:IIIIII
XM_003946369.1 bad_alignment:II
XM_003946375.1 bad_alignment:I
XM_003946376.1 bad_alignment:IIDID
XM_003946380.1 bad_alignment:DI
XM_003946382.1 bad_alignment:ID
XM_003946383.1 chimeric
XM_003946384.1 bad_alignment:IDDIDI
XM_003946385.1 chimeric
XM_003946388.1 bad_alignment:III
XM_003946394.1 bad_alignment:I
XM_003946395.1 no_alignment
XM_003946399.1 bad_alignment:D
XM_003946401.1 bad_alignment:I
XM_003946403.1 bad_alignment:DI
XM_003946405.1 chimeric
XM_003946409.1 bad_alignment:DD
XM_003946411.1 bad_alignment:IIDDIDIDDIII
XM_003946412.1 chimeric
XM_003946416.1 bad_alignment:IIIDIIDD
XM_003946417.1 bad_alignment:D
XM_003946420.1 bad_alignment:I
XM_003946421.1 bad_alignment:DI
XM_003946423.1 bad_alignment:I
XM_003946425.1 bad_alignment:DDDDIID
XM_003946431.1 chimeric
XM_003946433.1 bad_alignment:DDD
XM_003946435.1 chimeric
XM_003946436.1 chimeric
XM_003946437.1 chimeric
XM_003946438.1 chimeric
XM_003946439.1 bad_alignment:DIDD
XM_003946440.1 bad_alignment:DIDI
XM_003946441.1 bad_alignment:DII
XM_003946442.1 chimeric
XM_003946443.1 chimeric
XM_003946444.1 chimeric
XM_003946445.1 bad_alignment:DII
XM_003946447.1 bad_alignment:IDD
XM_003946449.1 bad_alignment:D
XM_003946459.1 bad_alignment:DI
XM_141020.8 bad_alignment:D
XM_355880.8 bad_alignment:D
XM_357051.6 bad_alignment:D
XM_358238.6 bad_alignment:D
XM_359206.5 chimeric
XM_485681.7 bad_alignment:DD
XM_486235.6 bad_alignment:D
XM_618920.6 bad_alignment:I
XM_884945.2 weird_alignment:chr5_JH584299_random
XM_889473.3 weird_alignment:chr5_GL456354_random
XM_889788.4 weird_alignment:chr5_JH584299_random
XM_893296.4 bad_alignment:IIDDDDD
XM_894492.1 bad_alignment:D
XM_894989.5 bad_alignment:IIDDI
XM_904627.1 bad_alignment:D
XM_904805.5 bad_alignment:D
XM_905140.4 weird_alignment:chr4_JH584292_random
XM_905449.6 chimeric
XM_905763.2 bad_alignment:IDDI
XM_906010.4 bad_alignment:IIIDDID
XM_908402.6 bad_alignment:IIDDI
XM_913492.5 bad_alignment:D
XM_913669.5 bad_alignment:D
XM_914307.5 chimeric
XM_914937.5 bad_alignment:IID
XM_914998.2 bad_alignment:I
XM_916080.4 bad_alignment:I
XM_916567.3 bad_alignment:D
XM_917520.5 bad_alignment:D
XM_917659.5 bad_alignment:DD
XM_917895.4 bad_alignment:D
XM_917927.3 bad_alignment:D
XM_917930.4 bad_alignment:D
XM_918592.5 chimeric
XM_973659.4 bad_alignment:IDI
XM_975798.4 chimeric
XM_977084.2 weird_alignment:chr5_GL456354_random