config1_meerkat.txt

Project:
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Project name          = meerkat1
Type                  = mito
Genome Range          = 12000-21000
K-mer                 = 39
Max memory            = 
Extended log          = 
Save assembled reads  = 
Seed Input            = /home/derezanin/species_comp/feliformes/herpestidae/meerkat_mitogenome/reference_mitogenomes/small_asian_mongoose_mitogenome.fa
Reference sequence    = 
Variance detection    = no
Chloroplast sequence  =

Dataset 1:
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Read Length           = 150
Insert size           = 550
Platform              = illumina
Single/Paired         = PE
Combined reads        = 
Forward reads         = /home/derezanin/species_comp/feliformes/herpestidae/meerkat_mitogenome/novoplasty_run/adapt_cut/meerkat_adpt_cut_R1_val_1.fq.gz
Reverse reads         = /home/derezanin/species_comp/feliformes/herpestidae/meerkat_mitogenome/novoplasty_run/adapt_cut/meerkat_adpt_cut_R2_val_2.fq.gz

Heteroplasmy:
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MAF                   =
HP exclude list       = 
PCR-free              = yes

Optional:
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Insert size auto      = yes
Insert Range          = 1.6
Insert Range strict   = 1.3
Use Quality Scores    =