t2smap_workflow does not use explicit mask

[tsalo]

Summary

Although our logger says that the explicit mask is used, it doesn't look like this was ever implemented.

tedana/tedana/workflows/t2smap.py

Lines 199 to 203 in c1423c1

	if mask is None:
	LGR.info('Computing adaptive mask')
	else:
	LGR.info('Using user-defined mask')
	mask, masksum = utils.make_adaptive_mask(catd, getsum=True)

Additional Detail

I think this serves as a good example of why #488 is important. t2smap_workflow gets very little attention, and as a result may be overlooked in terms of features added to tedana_workflow.

I noticed this bug while working on #513 with @cjl2007's data.

Next Steps

1. Add mask parameter to make_adaptive_mask call, as is done in tedana_workflow.

mask, masksum = utils.make_adaptive_mask(catd, mask=mask, getsum=True)