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Neoplasm codes #8

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vanossj opened this issue Aug 22, 2024 · 2 comments
Closed

Neoplasm codes #8

vanossj opened this issue Aug 22, 2024 · 2 comments

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@vanossj
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vanossj commented Aug 22, 2024

Could a generic Neoplasm roi be added to SegDB? For MHubAI/models#82 and MHubAI/models#84 it would be useful to specify Neoplasm, or malignant neoplasm, but those models aren't deciding between primary and metastatic neoplasms.

The qiicr seg json site has the following neoplasm* labels.

qiicr name SCT code SCT meaning in SegDB
Neoplasm 108369006 Neoplasm (morphologic abnormality) no
Neoplasm, Primary 86049000 Malignant neoplasm, primary (morphologic abnormality) yes
Neoplasm, Secondary 14799000 Neoplasm, metastatic (morphologic abnormality) no

I noticed that Neoplasm, Primary actually encodes a 'malignant' primary neoplasm, but the other codes do not specify malignancy.

Issue #4 already pointed out that the Neoplasm, Primary code 86049000 is outdated.

There are other codes that could specify malignant neoplasm (1240414004, 6219000)

@LennyN95
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Yes, I agree that would be a great addition.

@LennyN95
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We now have the following three codes in SegDB: NEOPLASM, NEOPLASM_MALIGNANT_PRIMARY, NEOPLASM_METASTATIC_SECONDARY.

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