Summary

This is project "cytometer" by Ramón Casero, Mammalian Genetics Unit (MGU), Medical Research Council (MRC) Harwell, UK.

This project contains source code for tha paper by Casero et al., "Phenotyping of Klf14 mouse white adipose tissue enabled by whole slide segmentation with deep neural networks", bioRxiv, 2021:

to segment white adipocytes from whole slides of H&E white adipose tissue histology (usually in NDPI files from the microscope, although any other format that can be read by openslide should work too)
to phenotype white adipose tissue in Klf14 mice