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<a href="act_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">/* Copyright (c) 2008-2022 the MRtrix3 contributors.</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment"> *</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment"> * This Source Code Form is subject to the terms of the Mozilla Public</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment"> * License, v. 2.0. If a copy of the MPL was not distributed with this</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment"> * file, You can obtain one at http://mozilla.org/MPL/2.0/.</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment"> *</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment"> * Covered Software is provided under this License on an "as is"</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="comment"> * basis, without warranty of any kind, either expressed, implied, or</span></div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="comment"> * statutory, including, without limitation, warranties that the</span></div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="comment"> * Covered Software is free of defects, merchantable, fit for a</span></div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="comment"> * particular purpose or non-infringing.</span></div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span><span class="comment"> * See the Mozilla Public License v. 2.0 for more details.</span></div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="comment"> *</span></div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="comment"> * For more details, see http://www.mrtrix.org/.</span></div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="comment"> */</span></div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> </div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span><span class="preprocessor">#ifndef __dwi_tractography_act_act_h__</span></div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="preprocessor">#define __dwi_tractography_act_act_h__</span></div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> </div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="preprocessor">#include "<a class="code" href="app_8h.html">app.h</a>"</span></div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span><span class="preprocessor">#include "<a class="code" href="header_8h.html">header.h</a>"</span></div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> </div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> </div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="comment">// Actually think it's preferable to not use these</span></div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"><a class="line" href="act_8h.html#a60f3a40a4eb194cdc6945fc46e1c2157"> 25</a></span><span class="preprocessor">#define ACT_WM_INT_REQ 0.0</span></div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"><a class="line" href="act_8h.html#a367d00398389ed07f2bafe8c5e213764"> 26</a></span><span class="preprocessor">#define ACT_WM_ABS_REQ 0.0</span></div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> </div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"><a class="line" href="act_8h.html#af67b0ac2d9093b126e76386caeb2be7f"> 28</a></span><span class="preprocessor">#define GMWMI_ACCURACY 0.01 </span><span class="comment">// Absolute value of tissue proportion difference</span></div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> </div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span><span class="comment">// Number of times a backtrack attempt will be made from a certain maximal track length before the length of truncation is increased</span></div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"><a class="line" href="act_8h.html#ae1afdbe7006b76a6b7dcacdce9b4eaa1"> 31</a></span><span class="preprocessor">#define ACT_BACKTRACK_ATTEMPTS 3</span></div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> </div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> </div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespace_m_r.html">MR</a></div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span>{</div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> </div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> <span class="keyword">namespace </span>App { <span class="keyword">class </span>OptionGroup; }</div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> </div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <span class="keyword">namespace </span>DWI</div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> {</div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"><a class="line" href="namespace_m_r_1_1_d_w_i_1_1_tractography.html"> 42</a></span> <span class="keyword">namespace </span>Tractography</div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> {</div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> </div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> <span class="keyword">class </span><a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_properties.html">Properties</a>;</div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> </div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"><a class="line" href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t.html"> 47</a></span> <span class="keyword">namespace </span>ACT</div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> {</div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <span class="keyword">extern</span> <span class="keyword">const</span> <a class="code hl_class" href="class_m_r_1_1_app_1_1_option_group.html">App::OptionGroup</a> <a class="code hl_variable" href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t.html#aa07056fcd6c0e137a0824810f4a1d9a9">ACTOption</a>;</div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> </div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"><a class="line" href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t.html#adff80506f27b60224d130c7d79fe8066"> 52</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t.html#adff80506f27b60224d130c7d79fe8066">load_act_properties</a> (<a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_properties.html">Properties</a>& properties);</div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"><a class="line" href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t.html#a67e3261d3eadd5b7c114a6d8fb3759e4"> 54</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t.html#a67e3261d3eadd5b7c114a6d8fb3759e4">verify_5TT_image</a> (<span class="keyword">const</span> <a class="code hl_class" href="class_m_r_1_1_header.html">Header</a>&);</div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> }</div>
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> }</div>
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> }</div>
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span>}</div>
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> </div>
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span><span class="preprocessor">#endif</span></div>
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> </div>
<div class="ttc" id="aapp_8h_html"><div class="ttname"><a href="app_8h.html">app.h</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_app_1_1_option_group_html"><div class="ttname"><a href="class_m_r_1_1_app_1_1_option_group.html">MR::App::OptionGroup</a></div><div class="ttdoc">a class to hold a named list of Option's</div><div class="ttdef"><b>Definition:</b> <a href="cmdline__option_8h_source.html#l00418">cmdline_option.h:418</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_properties_html"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_properties.html">MR::DWI::Tractography::Properties</a></div><div class="ttdef"><b>Definition:</b> <a href="properties_8h_source.html#l00045">properties.h:45</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_header_html"><div class="ttname"><a href="class_m_r_1_1_header.html">MR::Header</a></div><div class="ttdef"><b>Definition:</b> <a href="header_8h_source.html#l00048">header.h:48</a></div></div>
<div class="ttc" id="aheader_8h_html"><div class="ttname"><a href="header_8h.html">header.h</a></div></div>
<div class="ttc" id="anamespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_html_a67e3261d3eadd5b7c114a6d8fb3759e4"><div class="ttname"><a href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t.html#a67e3261d3eadd5b7c114a6d8fb3759e4">MR::DWI::Tractography::ACT::verify_5TT_image</a></div><div class="ttdeci">void verify_5TT_image(const Header &)</div></div>
<div class="ttc" id="anamespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_html_aa07056fcd6c0e137a0824810f4a1d9a9"><div class="ttname"><a href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t.html#aa07056fcd6c0e137a0824810f4a1d9a9">MR::DWI::Tractography::ACT::ACTOption</a></div><div class="ttdeci">const App::OptionGroup ACTOption</div></div>
<div class="ttc" id="anamespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_html_adff80506f27b60224d130c7d79fe8066"><div class="ttname"><a href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t.html#adff80506f27b60224d130c7d79fe8066">MR::DWI::Tractography::ACT::load_act_properties</a></div><div class="ttdeci">void load_act_properties(Properties &properties)</div></div>
<div class="ttc" id="anamespace_m_r_html"><div class="ttname"><a href="namespace_m_r.html">MR</a></div><div class="ttdef"><b>Definition:</b> <a href="core_2adapter_2base_8h_source.html#l00023">base.h:24</a></div></div>
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<li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_6da8e6f1bfdb5540a85bd819d2a13962.html">dwi</a></li><li class="navelem"><a class="el" href="dir_6f8fcd489e430c1a1b22716f7655ad56.html">tractography</a></li><li class="navelem"><a class="el" href="dir_73982082da2168e7c7c1de9421e17e98.html">ACT</a></li><li class="navelem"><a class="el" href="act_8h.html">act.h</a></li>
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