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Update to new Fragpipe output #37

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PatrickvanZalm opened this issue Feb 18, 2022 · 2 comments
Open

Update to new Fragpipe output #37

PatrickvanZalm opened this issue Feb 18, 2022 · 2 comments
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@PatrickvanZalm
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Hi all,

Very nice tool, I really like it!!

Fragpipe's IonQuant has recently been updated which now produces combined_peptide.tsv and combined_peptide_modified.tsv. I was wondering if this recent update can be added? The update also causes the combined_peptide.tsv not to work anymore.

Cheers,
Patrick

@ibludau
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ibludau commented Feb 22, 2022

Ho Patrick,

thanks a lot for letting us know.
Could you send us a small example file so we can locally test it and update AlphaMap?

Thanks a lot!
Cheers,
Isabell

@PatrickvanZalm
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Hi Isabell,

Of course. See attached the combined_peptide.tsv and combined_modified_peptide.tsv files of a small dataset.

Hope it helps.
drive-download-20220223T070351Z-001.zip

Best,
Patrick

@ibludau ibludau self-assigned this May 17, 2022
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