-
Notifications
You must be signed in to change notification settings - Fork 7
/
Copy path015_PackageRelease.R
392 lines (332 loc) · 25.8 KB
/
015_PackageRelease.R
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
library(raster)
library(stringr)
source('src/000_ConvenienceFunctions.R')
createFolder <- function(name) dir.create(name,showWarnings = FALSE)
makePlot <- function(name,fname, cols = scico::scico(10,palette = 'roma') ){
r <- raster(name)
fname <- paste0(tools::file_path_sans_ext(fname),'.png')
if(stringr::str_detect(name, 'cv')) cols = scico(10,palette = 'tokyo',direction = -1)
png(fname, width = 1000, height = 800, units = 'px', type = 'cairo')
plot(r, col = cols)
dev.off()
}
# Define output path
# path_output = 'P:/bec_data/001_projects/2019_NatureMap'
path_output = '/mnt/pdrive/bec_data/001_projects/2019_NatureMap'
createFolder(path_output)
# Define output folder
path_output_folder = paste0(path_output,'/NatureMap_prioritymaps')
createFolder(path_output_folder)
# ------------- #
##############################
# Save the global grid ids and fractional land cover data
land <- raster("data/globalgrid_mollweide_10km.tif")
land <- setMinMax(land)
writeGeoTiff(land, paste0(path_output_folder,'/globalgrid_mollweide_10km.tif'))
# And 50km
land <- raster("data/globalgrid_mollweide_50km.tif")
land <- setMinMax(land)
writeGeoTiff(land, paste0(path_output_folder,'/globalgrid_mollweide_50km.tif'))
##############################
#### 'BiodiversityCarbonWater' ----
newdir = paste0(path_output_folder,'/BiodiversityCarbonWater/10km')
createFolder(newdir)
# Copy files over
file.copy(from = "results/10km_esh_ranked/minshort_speciestargets_biome.id__carbon__water__esh10km_repruns10_ranked.tif",
to = paste0(newdir, "/minshort_speciestargets_biome.id__carbon__water__esh10km_repruns10_ranked.tif")) # Mean
makePlot("results/10km_esh_ranked/minshort_speciestargets_biome.id__carbon__water__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__carbon__water__esh10km_repruns10_ranked.png"))
file.copy(from = "results/10km_esh_ranked/minshort_speciestargets_biome.id__carbon__water__esh10km_repruns10_cv.tif",
to = paste0(newdir, "/minshort_speciestargets_biome.id__carbon__water__esh10km_repruns10_cv.tif")) # Mean
makePlot("results/10km_esh_ranked/minshort_speciestargets_biome.id__carbon__water__esh10km_repruns10_cv.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__carbon__water__esh10km_repruns10_cv.png"),
cols = scico(10,palette = 'tokyo',direction = -1))
# --- #
# With Protected areas locked in
file.copy('results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__water__esh10km_repruns10_ranked.tif',
paste0(newdir, '/minshort_speciestargets_biome.id_withPA_carbon__water__esh10km_repruns10_ranked.tif'))
makePlot('results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__water__esh10km_repruns10_ranked.tif',
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_carbon__water__esh10km_repruns10_ranked.png'))
file.copy("results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__water__esh10km_repruns10_cv.tif",
paste0(newdir, '/minshort_speciestargets_biome.id_withPA_carbon__water__esh10km_repruns10_cv.tif'))
makePlot("results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__water__esh10km_repruns10_cv.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_carbon__water__esh10km_repruns10_cv.png'),
cols = scico(10,palette = 'tokyo',direction = -1))
# --------------------- #
# Without biome targets
file.copy(from = "results/10km_esh_ranked/minshort_speciestargets_carbon__water__esh10km_repruns10_ranked.tif",
to = paste0(newdir, "/minshort_speciestargets_carbon__water__esh10km_repruns10_ranked.tif")) # Mean
makePlot("results/10km_esh_ranked/minshort_speciestargets_carbon__water__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_carbon__water__esh10km_repruns10_ranked.png"))
file.copy(from = "results/10km_esh_ranked/minshort_speciestargets_carbon__water__esh10km_repruns10_cv.tif",
to = paste0(newdir, "/minshort_speciestargets_carbon__water__esh10km_repruns10_cv.tif")) # Mean
makePlot("results/10km_esh_ranked/minshort_speciestargets_carbon__water__esh10km_repruns10_cv.tif",
paste0(newdir, "/minshort_speciestargets_carbon__water__esh10km_repruns10_cv.png"),
cols = scico(10,palette = 'tokyo',direction = -1))
#
# # --- #
# # Without Biome targets and Protected areas locked in
file.copy('results/10km_esh_ranked/minshort_speciestargetswithPA_carbon__water__esh10km_repruns10_ranked.tif',
paste0(newdir, '/minshort_speciestargetswithPA_carbon__water__esh10km_repruns10_ranked.tif'))
makePlot('results/10km_esh_ranked/minshort_speciestargetswithPA_carbon__water__esh10km_repruns10_ranked.tif',
paste0(newdir,'/minshort_speciestargetswithPA_carbon__water__esh10km_repruns10_ranked.png'))
# --- #
# And for 50km
newdir = paste0(path_output_folder,'/BiodiversityCarbonWater/50km')
createFolder(newdir)
file.copy("results/50km_esh_ranked/minshort_speciestargets_carbon__water__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_carbon__water__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_carbon__water__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_carbon__water__esh50km_repruns10_ranked.png'))
file.copy("results/50km_esh_ranked/minshort_speciestargets_carbon__water__esh50km_repruns10_cv.tif",
paste0(newdir, "/minshort_speciestargets_carbon__water__esh50km_repruns10_cv.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_carbon__water__esh50km_repruns10_cv.tif",
paste0(newdir,'/minshort_speciestargets_carbon__water__esh50km_repruns10_cv.png'),
cols = scico(10,palette = 'tokyo',direction = -1))
# With PA
file.copy("results/50km_esh_ranked/minshort_speciestargetswithPA_carbon__water__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargetswithPA_carbon__water__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargetswithPA_carbon__water__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargetswithPA_carbon__water__esh50km_repruns10_ranked.png'))
file.copy("results/50km_esh_ranked/minshort_speciestargetswithPA_carbon__water__esh50km_repruns10_cv.tif",
paste0(newdir, "/minshort_speciestargetswithPA_carbon__water__esh50km_repruns10_cv.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargetswithPA_carbon__water__esh50km_repruns10_cv.tif",
paste0(newdir,'/minshort_speciestargetswithPA_carbon__water__esh50km_repruns10_cv.png'),
cols = scico(10,palette = 'tokyo',direction = -1))
# With Biome id and PA
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__water__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id_withPA_carbon__water__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__water__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_carbon__water__esh50km_repruns10_ranked.png'))
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__water__esh50km_repruns10_cv.tif",
paste0(newdir, "/minshort_speciestargets_biome.id_withPA_carbon__water__esh50km_repruns10_cv.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__water__esh50km_repruns10_cv.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_carbon__water__esh50km_repruns10_cv.png'),
cols = scico(10,palette = 'tokyo',direction = -1))
# Without PA and biome id
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id__carbon__water__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__carbon__water__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id__carbon__water__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id__carbon__water__esh50km_repruns10_ranked.png'))
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id__carbon__water__esh50km_repruns10_cv.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__carbon__water__esh50km_repruns10_cv.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id__carbon__water__esh50km_repruns10_cv.tif",
paste0(newdir,'/minshort_speciestargets_biome.id__carbon__water__esh50km_repruns10_cv.png'),
cols = scico(10,palette = 'tokyo',direction = -1))
# ---------------- #
#### 'BiodiversityCarbon' ----
createFolder(paste0(path_output_folder,'/BiodiversityCarbon/'))
newdir = paste0(path_output_folder,'/BiodiversityCarbon/10km')
createFolder(newdir)
# Without Biome id and without PA
file.copy("results/10km_esh_ranked/minshort_speciestargets_carbon__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_carbon__esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_carbon__esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_carbon__esh10km_repruns10_ranked.png'))
# Without Biome id and with PA
file.copy("results/10km_esh_ranked/minshort_speciestargetswithPA_carbon__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargetswithPA_carbon__esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargetswithPA_carbon__esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargetswithPA_carbon__esh10km_repruns10_ranked.png'))
file.copy("results/10km_esh_ranked/minshort_speciestargetswithPA_carbon__esh10km_repruns10_cv.tif",
paste0(newdir, "/minshort_speciestargetswithPA_carbon__esh10km_repruns10_cv.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargetswithPA_carbon__esh10km_repruns10_cv.tif",
paste0(newdir,'/minshort_speciestargetswithPA_carbon__esh10km_repruns10_cv.png'),
cols = scico(10,palette = 'tokyo',direction = -1))
# With Biome ID and without PA
file.copy("results/10km_esh_ranked/minshort_speciestargets_biome.id__carbon__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__carbon__esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_biome.id__carbon__esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id__carbon__esh10km_repruns10_ranked.png'))
file.copy("results/10km_esh_ranked/minshort_speciestargets_biome.id__carbon__esh10km_repruns10_cv.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__carbon__esh10km_repruns10_cv.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_biome.id__carbon__esh10km_repruns10_cv.tif",
paste0(newdir,'/minshort_speciestargets_biome.id__carbon__esh10km_repruns10_cv.png'),
cols = scico(10,palette = 'tokyo',direction = -1))
# With Biome ID and with PA
file.copy( "results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id_withPA_carbon__esh10km_repruns10_ranked.tif"))
makePlot( "results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_carbon__esh10km_repruns10_ranked.png'))
file.copy("results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__esh10km_repruns10_cv.tif",
paste0(newdir, "/minshort_speciestargets_biome.id_withPA_carbon__esh10km_repruns10_cv.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__esh10km_repruns10_cv.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_carbon__esh10km_repruns10_cv.png'),
cols = scico(10,palette = 'tokyo',direction = -1))
# --- #
# 50km
newdir = paste0(path_output_folder,'/BiodiversityCarbon/50km')
createFolder(newdir)
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id_withPA_carbon__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_carbon__esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_carbon__esh50km_repruns10_cv.tif"
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id__carbon__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__carbon__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id__carbon__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id__carbon__esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargets_biome.id__carbon__esh50km_repruns10_cv.tif"
file.copy("results/50km_esh_ranked/minshort_speciestargets_carbon__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_carbon__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_carbon__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_carbon__esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargets_carbon__esh50km_repruns10_cv.tif"
file.copy("results/50km_esh_ranked/minshort_speciestargetswithPA_carbon__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargetswithPA_carbon__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargetswithPA_carbon__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargetswithPA_carbon__esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargetswithPA_carbon__esh50km_repruns10_cv.tif"
# ---------------- #
#### 'BiodiversityWater' ----
createFolder(paste0(path_output_folder,'/BiodiversityWater'))
newdir = paste0(path_output_folder,'/BiodiversityWater/10km')
createFolder(newdir)
# No PA and without biome
file.copy("results/10km_esh_ranked/minshort_speciestargets_water__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_water__esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_water__esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_water__esh10km_repruns10_ranked.png'))
# "results/10km_esh_ranked/minshort_speciestargets_water__esh10km_repruns10_cv.tif"
# PA and without biome
file.copy("results/10km_esh_ranked/minshort_speciestargetswithPA_water__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargetswithPA_water__esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargetswithPA_water__esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargetswithPA_water__esh10km_repruns10_ranked.png'))
# "results/10km_esh_ranked/minshort_speciestargetswithPA_water__esh10km_repruns10_cv.tif"
# PA and with biome
file.copy("results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_water__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id_withPA_water__esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_water__esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_water__esh10km_repruns10_ranked.png'))
# "results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_water__esh10km_repruns10_cv.tif"
# NO Pa and with biome
file.copy( "results/10km_esh_ranked/minshort_speciestargets_biome.id__water__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__water__esh10km_repruns10_ranked.tif"))
makePlot( "results/10km_esh_ranked/minshort_speciestargets_biome.id__water__esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id__water__esh10km_repruns10_ranked.png'))
# "results/10km_esh_ranked/minshort_speciestargets_biome.id__water__esh10km_repruns10_cv.tif"
# --- #
# 50km
newdir = paste0(path_output_folder,'/BiodiversityWater/50km')
createFolder(newdir)
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id__water__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__water__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id__water__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id__water__esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargets_biome.id__water__esh50km_repruns10_cv.tif"
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_water__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id_withPA_water__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_water__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_water__esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_water__esh50km_repruns10_cv.tif"
file.copy("results/50km_esh_ranked/minshort_speciestargets_water__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_water__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_water__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_water__esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargets_water__esh50km_repruns10_cv.tif"
file.copy("results/50km_esh_ranked/minshort_speciestargetswithPA_water__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargetswithPA_water__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargetswithPA_water__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargetswithPA_water__esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargetswithPA_water__esh50km_repruns10_cv.tif"
# ---------------- #
#### 'Biodiversityonly' ----
createFolder(paste0(path_output_folder,'/BiodiversityOnly'))
newdir = paste0(path_output_folder,'/BiodiversityOnly/10km')
createFolder(newdir)
file.copy("results/10km_esh_ranked/minshort_speciestargets_esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_esh10km_repruns10_ranked.png'))
#"results/10km_esh_ranked/minshort_speciestargets_esh10km_repruns10_cv.tif"
# Only 1 set
file.copy("results/10km_esh_ranked/minshort_speciestargetswithPA_esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargetswithPA_esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargetswithPA_esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargetswithPA_esh10km_repruns10_ranked.png'))
#"results/10km_esh_ranked/minshort_speciestargetswithPA_esh10km_repruns10_cv.tif"
file.copy("results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id_withPA_esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_esh10km_repruns10_ranked.png'))
#"results/10km_esh_ranked/minshort_speciestargets_biome.id_withPA_esh10km_repruns10_cv.tif"
file.copy("results/10km_esh_ranked/minshort_speciestargets_biome.id__esh10km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__esh10km_repruns10_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_biome.id__esh10km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id__esh10km_repruns10_ranked.png'))
# "results/10km_esh_ranked/minshort_speciestargets_biome.id__esh10km_repruns10_cv.tif"
# ------- #
# 50KM
newdir = paste0(path_output_folder,'/BiodiversityOnly/50km')
createFolder(newdir)
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id__esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id__esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id__esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id__esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargets_biome.id__esh50km_repruns10_cv.tif"
file.copy("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_biome.id_withPA_esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_biome.id_withPA_esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargets_biome.id_withPA_esh50km_repruns10_cv.tif"
file.copy("results/50km_esh_ranked/minshort_speciestargets_esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargets_esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargets_esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargets_esh50km_repruns10_cv.tif"
file.copy("results/50km_esh_ranked/minshort_speciestargetswithPA_esh50km_repruns10_ranked.tif",
paste0(newdir, "/minshort_speciestargetswithPA_esh50km_repruns10_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargetswithPA_esh50km_repruns10_ranked.tif",
paste0(newdir,'/minshort_speciestargetswithPA_esh50km_repruns10_ranked.png'))
#"results/50km_esh_ranked/minshort_speciestargetswithPA_esh50km_repruns10_cv.tif"
# -------------- #
#### Phylogenetic ####
createFolder(paste0(path_output_folder,'/BiodiversityWeights'))
newdir = paste0(path_output_folder,'/BiodiversityWeights/50km')
createFolder(newdir)
# No weights
file.copy("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-noweight-comparison__esh50km_ranked.tif",
paste0(newdir, "/minshort_speciestargets_waPlants_phylo-noweight-comparison__esh50km_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-noweight-comparison__esh50km_ranked.tif",
paste0(newdir,'/minshort_speciestargets_waPlants_phylo-noweight-comparison__esh50km_ranked.png'))
# Rank weights
file.copy("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-rank_weight-comparison__esh50km_ranked.tif",
paste0(newdir, "/minshort_speciestargets_waPlants_phylo-rank_weight-comparison__esh50km_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-rank_weight-comparison__esh50km_ranked.tif",
paste0(newdir,'/minshort_speciestargets_waPlants_phylo-rank_weight-comparison__esh50km_ranked.png'))
# ED weighted
file.copy("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-ed-comparison__esh50km_ranked.tif",
paste0(newdir, "/minshort_speciestargets_waPlants_phylo-ed-comparison__esh50km_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-ed-comparison__esh50km_ranked.tif",
paste0(newdir,'/minshort_speciestargets_waPlants_phylo-ed-comparison__esh50km_ranked.png'))
# EDGE weighted
file.copy("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-edge-comparison__esh50km_ranked.tif",
paste0(newdir, "/minshort_speciestargets_waPlants_phylo-edge-comparison__esh50km_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-edge-comparison__esh50km_ranked.tif",
paste0(newdir,'/minshort_speciestargets_waPlants_phylo-edge-comparison__esh50km_ranked.png'))
# --- #
# 50km
createFolder(paste0(path_output_folder,'/BiodiversityWeights'))
newdir = paste0(path_output_folder,'/BiodiversityWeights/50km')
createFolder(newdir)
# No weights
file.copy("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-noweight-comparison__esh10km_ranked.tif",
paste0(newdir, "/minshort_speciestargets_waPlants_phylo-noweight-comparison__esh10km_ranked.tif"))
makePlot("results/50km_esh_ranked/minshort_speciestargets_waPlants_phylo-noweight-comparison__esh10km_ranked.tif",
paste0(newdir,'/minshort_speciestargets_waPlants_phylo-noweight-comparison__esh10km_ranked.png'))
# Rank weights
file.copy("results/10km_esh_ranked/minshort_speciestargets_waPlants_phylo-rank_weight-comparison__esh10km_ranked.tif",
paste0(newdir, "/minshort_speciestargets_waPlants_phylo-rank_weight-comparison__esh10km_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_waPlants_phylo-rank_weight-comparison__esh10km_ranked.tif",
paste0(newdir,'/minshort_speciestargets_waPlants_phylo-rank_weight-comparison__esh10km_ranked.png'))
# ED weighted
file.copy("results/10km_esh_ranked/minshort_speciestargets_waPlants_phylo-ed-comparison__esh10km_ranked.tif",
paste0(newdir, "/minshort_speciestargets_waPlants_phylo-ed-comparison__esh10km_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_waPlants_phylo-ed-comparison__esh10km_ranked.tif",
paste0(newdir,'/minshort_speciestargets_waPlants_phylo-ed-comparison__esh10km_ranked.png'))
# EDGE weighted
file.copy("results/10km_esh_ranked/minshort_speciestargets_waPlants_phylo-edge-comparison__esh10km_ranked.tif",
paste0(newdir, "/minshort_speciestargets_waPlants_phylo-edge-comparison__esh10km_ranked.tif"))
makePlot("results/10km_esh_ranked/minshort_speciestargets_waPlants_phylo-edge-comparison__esh10km_ranked.tif",
paste0(newdir,'/minshort_speciestargets_waPlants_phylo-edge-comparison__esh10km_ranked.png'))