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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%>%")
export(AggregateCellMetadata)
export(AverageSampleModuleZscore)
export(BulkDesignMatrix)
export(CombineResults)
export(EnrichmentJaccard)
export(ExtractResult)
export(FgseaList)
export(FitDream)
export(FitLmer)
export(FitLmerContrast)
export(GSEABarPlot)
export(GSEABubblePlot)
export(GetContrastResults)
export(GetContrastResultsRaw)
export(GetGeneMatrix)
export(GetLeadingEdgeFull)
export(GetLeadingEdgeGenes)
export(GetRankResults)
export(GetRankResultsRaw)
export(GetTidySummary)
export(HeatmapDiag)
export(LeadEdgeSampleHeatmap)
export(LeadEdgeTidySampleExprs)
export(LeadingEdgeIndexed)
export(Normalize)
export(NormalizePseudobulk)
export(PlotFgsea)
export(PlotGeneDistCohort)
export(PlotHypergeometric)
export(PseudobulkList)
export(RbindGseaResultList)
export(RunFgseaOnRankList)
export(RunHypergeometricTest)
export(RunVoomLimma)
export(RunVoomLimma_covar)
export(SCMixedPoisson)
export(SubjectCelltypeTable)
export(TidySampleData)
export(WeightedCellModuleScore)
export(calc_avg_module_zscore)
import(Matrix)
import(ggplot2)
importFrom(AnnotationDbi,keys)
importFrom(BiocParallel,SnowParam)
importFrom(BiocParallel,register)
importFrom(GSVA,gsva)
importFrom(GeneOverlap,getMatrix)
importFrom(GeneOverlap,newGOM)
importFrom(Matrix,colMeans)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(broom,tidy)
importFrom(clusterProfiler,enricher)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarize_each)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,filterByExpr)
importFrom(egg,ggarrange)
importFrom(emmeans,emmeans)
importFrom(fgsea,fgsea)
importFrom(ggpubr,ggpaired)
importFrom(ggpubr,rremove)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(lme4,glmer)
importFrom(lme4,lmer)
importFrom(magrittr,"%>%")
importFrom(org.Hs.eg.db,org.Hs.eg.db)
importFrom(pheatmap,pheatmap)
importFrom(plyr,mapvalues)
importFrom(purrr,map_int)
importFrom(rlang,sym)
importFrom(slanter,slanted_orders)
importFrom(stats,as.formula)
importFrom(stats,model.matrix)
importFrom(stats,p.adjust)
importFrom(stringr,str_replace)
importFrom(tibble,column_to_rownames)
importFrom(tibble,remove_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,everything)
importFrom(tidyr,gather)
importFrom(tidyr,separate)
importFrom(tidyr,spread)
importFrom(variancePartition,dream)
importFrom(variancePartition,eBayes)
importFrom(variancePartition,voomWithDreamWeights)