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run.sh
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run.sh
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#!/bin/bash
echo "Running Benchmark script"
echo "RF00184"
./eddy.sh CCAUAACUACGUCUACAUAACCGACGCCUACCCCAGUUUCAUAGUAUUUUCUGG
cp b-results.txt ./Feb13/RF00184.txt
echo "RF01322"
./eddy.sh GUAGCACCCGGCCGCGAGGCCGGGUGAGGAUUGAAAC
cp b-results.txt ./Feb13/RF01322.txt
echo "RF01327"
./eddy.sh AUUUACAUACCACUUAGUUAAUAUAAAAC
cp b-results.txt ./Feb13/RF01327.txt
echo "RF01326"
./eddy.sh AUUAAAAUAAGACCGUUUCGGAAUGGAAAC
cp b-results.txt ./Feb13/RF01326.txt
echo "RF01338"
./eddy.sh CUUUCAAUUCCUUUUGGGAUUAAUC
cp b-results.txt ./Feb13/RF01338.txt
echo "RF01330"
./eddy.sh GUAUUCCGGGGCCAUGAUGCCCCGGCCUCAUUGAAGC
cp b-results.txt ./Feb13/RF01330.txt
echo "RF01342"
./eddy.sh AUUUCAAUCAACGCCCCGAGGAAGAGGGGAUUAAAAC
cp b-results.txt ./Feb13/RF01342.txt
echo "RF01381"
./eddy.sh UGACUAGCGGUAGGCUAGAAGGAG
cp b-results.txt ./Feb13/RF01381.txt
echo "RF01358"
./eddy.sh AUUUCCAUCCUCCAAGAGGUCUUAUUUUAAU
cp b-results.txt ./Feb13/RF01358.txt
echo "RF01359"
./eddy.sh AUUCAAAUAACCAAAAUCCUCGGAAGGGGAUUAAAACG
cp b-results.txt ./Feb13/RF01359.txt
echo "RF01352"
./eddy.sh CUUUCUAUUCCACUACGUUCAGAUAAAAC
cp b-results.txt ./Feb13/RF01352.txt
echo "RF01353"
./eddy.sh CUUCCAUACUAUCUAGUAAUUCUUAAAC
cp b-results.txt ./Feb13/RF01353.txt
echo "RF01354"
./eddy.sh CUUUCAAUCCUCUUUUUGAGAUUC
cp b-results.txt ./Feb13/RF01354.txt
echo "RF01356"
./eddy.sh GGCAAAGCCCGCCUGCGCGGGCUA
cp b-results.txt ./Feb13/RF01356.txt
echo "RF01357"
./eddy.sh GUUUCAAUCCUCUACGAGGCUAACGAGGUUUGCAACC
cp b-results.txt ./Feb13/RF01357.txt
echo "RF01317"
./eddy.sh CUUCACUGCCGUAUAGGCAGCCACAAAU
cp b-results.txt ./Feb13/RF01317.txt
echo "RF00469"
./eddy.sh UGGUGCCUACUCCUGCUUUCUGUAGGGGUAGGCAUCU
cp b-results.txt ./Feb13/RF00469.txt
echo "RF01369"
./eddy.sh GUCGAGACGGACUGAAAACCCAGAACGGGAUUGAAAC
cp b-results.txt ./Feb13/RF01369.txt
echo "RF01368"
./eddy.sh CCAAUAAUCCCUCAUCUAAAAAUCCAACCACUGAAAC
cp b-results.txt ./Feb13/RF01368.txt
echo "RF01374"
./eddy.sh CUAACAGUAGUUUACCAAAUAAUUUAGCGACUGAAAC
cp b-results.txt ./Feb13/RF01374.txt
echo "RF01380"
./eddy.sh GGCGACUGGUGAGUACGCC
cp b-results.txt ./Feb13/RF01380.txt
echo "RF00037"
./eddy.sh GUUCCUGCUUCAACAGUGUUUGGAUGGAAC
cp b-results.txt ./Feb13/RF00037.txt
echo "RF00032"
./eddy.sh ACAACGGCUCUUUUUAGAGCCACCAA
cp b-results.txt ./Feb13/RF00032.txt
echo "RF00847"
./eddy.sh AGGUGAGUUAGAUCUCAUAUCCUUCCGCAAAAUGGAAAUGAUAUGUAAUCUAGCUUACAG
cp b-results.txt ./Feb13/RF00847.txt
echo "RF01328"
./eddy.sh CUUUCUAAUCCCUCUUGGGAUUUUC
cp b-results.txt ./Feb13/RF01328.txt
echo "HCV"
./eddy.sh AGCGGGGGAGACAUAUAUCAUAGCCUGUCUCGUGCCCGACCCCGC
cp b-results.txt ./Feb13/HCV.txt
echo "TAR"
./eddy.sh GGUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGAGAACC
cp b-results.txt ./Feb13/TAR.txt
echo "done!"