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Command for MetaGeneMark (ORF calling from assemblies) #1

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nicorasco opened this issue Sep 7, 2018 · 0 comments
Open

Command for MetaGeneMark (ORF calling from assemblies) #1

nicorasco opened this issue Sep 7, 2018 · 0 comments

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@nicorasco
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The command to run the ORF predictor MetaGeneMark (Will output the predicted peptides in nucleotide and aminoacid fastas):

PATH-TO/MetaGeneMark_linux_64/mgm/gmhmmp -m PATH-TO/MetaGeneMark_linux_64/mgm/MetaGeneMark_v1.mod -a -d -A ${fileout}_mgm.ffa -D ${fileout}_mgm.fna ${filein}.fasta
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@nicorasco