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In the detection of Hb genes of the QC notebook the regex includes HB excluding patterns followed by P, i.e. adata.var_names.str.contains(("^HB[^(P)]")).
Other genes not pertaining to Hb may still pass this and thus be misidentified (I have not tested this with the toy dataset). A more comprehensive regex is ^HB(?!P|EGF|S1L), thus also excluding HBEGF and HBS1L.
Feel free to close this if it doesnt apply to the toy dataset.
The text was updated successfully, but these errors were encountered:
Hi
In the detection of Hb genes of the QC notebook the regex includes
HBexcluding patterns followed byP, i.e.adata.var_names.str.contains(("^HB[^(P)]")).Other genes not pertaining to Hb may still pass this and thus be misidentified (I have not tested this with the toy dataset). A more comprehensive regex is
^HB(?!P|EGF|S1L), thus also excludingHBEGFandHBS1L.Feel free to close this if it doesnt apply to the toy dataset.
The text was updated successfully, but these errors were encountered: