Simplify WACCM extraction

[K20shores]

With #214, TS1 files will be included with the install of music box

Acceptance criteria

• Extracting waccm does not require the user to provide the configuration file, only the name of one of the packaged examples.
  • This is for a demo, and changing the mechanism is easiest on the website. Let's make the demo as easy as possible.
• The output configuration is placed in the current directory in a folder called configuration
  • The server expects a zipped folder to contain the name configuration. Until we remove this requirement, we must enforce this
• A command line option --zip is added to the script so that the output will be a zipped file rather than just a directory
• Extraneous files are not included in the output. Right now, there's an extra json file which gets included that shouldn't
• The initial conditions file only contains photolysis rates. If we get surface reaction initial conditions working, we can add them

Ideas
For the waccm script, we should the TS1 configuration packaged with music box to make things simpler for people. Instead of providing a template, as a path to a configuration, consider changing the template argument to be one of the provided examples. Then the waccm script would be able to make a configuration for any of our examples that have matching species in waccm, not just TS1.

A suggested pattern to call the tools

waccmToMusicBox -d waccm/data/path  --date "20240301" --time "07:00" --latitude 3.1 --longitude 101.7 --template TS1
waccmToMusicBox -d waccm/data/path  --date "20240301" --time "07:00" --latitude 3.1 --longitude 101.7 --template Chapman
waccmToMusicBox -d waccm/data/path  --date "20240301" --time "07:00" --latitude 3.1 --longitude 101.7 --template CB5

waccmToMusicBox -d waccm/data/path  --date "20240301" --time "07:00" --latitude 3.1 --longitude 101.7 --template TS1 --zip

[K20shores]

Closed by #231