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Trying to build pynio I encountered the following errors:
libsrc/h5reader.c:42:14: error: too few arguments to function ‘H5Oget_info_by_name3’
42 | status = H5Oget_info_by_name(fid, root_name, &oi, H5P_DEFAULT);
libsrc/h5reader.c:2491:83: error: ‘H5O_info2_t’ has no member named ‘addr’
2491 | if(NULL == (already_visited = _NclHDF5_addr_visited(udata->seen, oinfo.addr)))
libsrc/h5reader.c:2693:12: error: too few arguments to function ‘H5Oget_info3’
2693 | if(H5Oget_info(type, &oi) >= 0)
libsrc/h5reader.c:4486:8: error: too few arguments to function ‘H5Oget_info_by_name3’
4486 | if(H5Oget_info_by_name(fid, grp_name, &oinfo, H5P_DEFAULT) < 0)
and similar repetitions. This looks to me like a version incompatibility or a bug in pynio's h5reader.c. All of the errors point to a discrepancy to the header files associated to my hdf5 installation (with openmpi support). Has anyone else encountered this problem?
Any information on a fix would be very much appreciated.
The text was updated successfully, but these errors were encountered:
Great find @fulminemizzega ! Thanks for pointing this out. That actually means that this is an out-of-date issue for a dependency of pynio as one is required to use the legacy extension of HDF 5, version 1.10 (as opposed to the now up-to-date version 1.12).
I have been trying to set up a package of pynio on archlinux with the following package versions:
pynio 1.5.5
python 3.9.1-2
ncl 6.6.2-1
hdf-eos2 2.20-1
hdf-eos5 1.16-2
hdf4 4.2.15-1
hdf5-openmpi 1.12.0-2
Trying to build pynio I encountered the following errors:
and similar repetitions. This looks to me like a version incompatibility or a bug in pynio's
h5reader.c
. All of the errors point to a discrepancy to the header files associated to my hdf5 installation (with openmpi support). Has anyone else encountered this problem?Any information on a fix would be very much appreciated.
The text was updated successfully, but these errors were encountered: