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workflow_tasks.py
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#!/usr/bin/env python3
import numpy as np
from typing import List
from applications import AppConfig
import rocoto.rocoto as rocoto
__all__ = ['Tasks', 'create_wf_task', 'get_wf_tasks']
class Tasks:
SERVICE_TASKS = ['arch', 'earc', 'getic']
VALID_TASKS = ['aerosol_init', 'coupled_ic', 'getic', 'init',
'prep', 'anal', 'sfcanl', 'analcalc', 'analdiag', 'gldas', 'arch',
'atmanalprep', 'atmanalrun', 'atmanalpost',
'earc', 'ecen', 'echgres', 'ediag', 'efcs',
'eobs', 'eomg', 'epos', 'esfc', 'eupd',
'atmensanalprep', 'atmensanalrun', 'atmensanalpost',
'fcst', 'post', 'ocnpost', 'vrfy', 'metp',
'postsnd', 'awips', 'gempak',
'wafs', 'wafsblending', 'wafsblending0p25',
'wafsgcip', 'wafsgrib2', 'wafsgrib20p25',
'waveawipsbulls', 'waveawipsgridded', 'wavegempak', 'waveinit',
'wavepostbndpnt', 'wavepostbndpntbll', 'wavepostpnt', 'wavepostsbs', 'waveprep']
def __init__(self, app_config: AppConfig, cdump: str) -> None:
self.app_config = app_config
self.cdump = cdump
# Save dict_configs and base in the internal state (never know where it may be needed)
self._configs = self.app_config.configs
self._base = self._configs['base']
self.n_tiles = 6 # TODO - this needs to be elsewhere
envar_dict = {'RUN_ENVIR': self._base.get('RUN_ENVIR', 'emc'),
'HOMEgfs': self._base.get('HOMEgfs'),
'EXPDIR': self._base.get('EXPDIR'),
'CDUMP': self.cdump,
'CDATE': '<cyclestr>@Y@m@d@H</cyclestr>',
'PDY': '<cyclestr>@Y@m@d</cyclestr>',
'cyc': '<cyclestr>@H</cyclestr>'}
self.envars = self._set_envars(envar_dict)
@staticmethod
def _set_envars(envar_dict) -> list:
envars = []
for key, value in envar_dict.items():
envars.append(rocoto.create_envar(name=key, value=str(value)))
return envars
@staticmethod
def _get_hybgroups(nens: int, nmem_per_group: int, start_index: int = 1):
ngrps = nens / nmem_per_group
groups = ' '.join([f'{x:02d}' for x in range(start_index, int(ngrps) + 1)])
return groups
@staticmethod
def _is_this_a_gdas_task(cdump, task_name):
if cdump != 'gdas':
raise TypeError(f'{task_name} must be part of the "gdas" cycle and not {cdump}')
def get_resource(self, task_name):
"""
Given a task name (task_name) and its configuration (task_names),
return a dictionary of resources (task_resource) used by the task.
Task resource dictionary includes:
account, walltime, cores, nodes, ppn, threads, memory, queue, partition, native
"""
scheduler = self.app_config.scheduler
task_config = self._configs[task_name]
account = task_config['ACCOUNT']
walltime = task_config[f'wtime_{task_name}']
if self.cdump in ['gfs'] and f'wtime_{task_name}_gfs' in task_config.keys():
walltime = task_config[f'wtime_{task_name}_gfs']
cores = task_config[f'npe_{task_name}']
if self.cdump in ['gfs'] and f'npe_{task_name}_gfs' in task_config.keys():
cores = task_config[f'npe_{task_name}_gfs']
ppn = task_config[f'npe_node_{task_name}']
if self.cdump in ['gfs'] and f'npe_node_{task_name}_gfs' in task_config.keys():
ppn = task_config[f'npe_node_{task_name}_gfs']
nodes = np.int(np.ceil(np.float(cores) / np.float(ppn)))
threads = task_config[f'nth_{task_name}']
if self.cdump in ['gfs'] and f'nth_{task_name}_gfs' in task_config.keys():
threads = task_config[f'nth_{task_name}_gfs']
memory = task_config.get(f'memory_{task_name}', None)
native = '--export=NONE' if scheduler in ['slurm'] else None
queue = task_config['QUEUE']
if task_name in Tasks.SERVICE_TASKS and scheduler not in ['slurm']:
queue = task_config['QUEUE_SERVICE']
partition = None
if scheduler in ['slurm']:
partition = task_config['QUEUE_SERVICE'] if task_name in Tasks.SERVICE_TASKS else task_config[
'PARTITION_BATCH']
task_resource = {'account': account,
'walltime': walltime,
'nodes': nodes,
'cores': cores,
'ppn': ppn,
'threads': threads,
'memory': memory,
'native': native,
'queue': queue,
'partition': partition}
return task_resource
def get_task(self, task_name, *args, **kwargs):
"""
Given a task_name, call the method for that task
"""
try:
return getattr(self, task_name, *args, **kwargs)()
except AttributeError:
raise AttributeError(f'"{task_name}" is not a valid task.\n' +
'Valid tasks are:\n' +
f'{", ".join(Tasks.VALID_TASKS)}')
# Specific Tasks begin here
def coupled_ic(self):
cpl_ic = self._configs['coupled_ic']
deps = []
# Atm ICs
atm_res = self._base.get('CASE', 'C384')
prefix = f"{cpl_ic['BASE_CPLIC']}/{cpl_ic['CPL_ATMIC']}/@Y@m@d@H/{self.cdump}"
for file in ['gfs_ctrl.nc'] + \
[f'{datatype}_data.tile{tile}.nc'
for datatype in ['gfs', 'sfc']
for tile in range(1, self.n_tiles + 1)]:
data = f"{prefix}/{atm_res}/INPUT/{file}"
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
# Ocean ICs
if self.app_config.do_ocean:
ocn_res = f"{self._base.get('OCNRES', '025'):03d}"
prefix = f"{cpl_ic['BASE_CPLIC']}/{cpl_ic['CPL_OCNIC']}/@Y@m@d@H/ocn"
for res in ['res'] + [f'res_{res_index}' for res_index in range(1, 5)]:
data = f"{prefix}/{ocn_res}/MOM.{res}.nc"
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
# Ice ICs
if self.app_config.do_ice:
ice_res = f"{self._base.get('ICERES', '025'):03d}"
ice_res_dec = f'{float(ice_res) / 100:.2f}'
prefix = f"{cpl_ic['BASE_CPLIC']}/{cpl_ic['CPL_ICEIC']}/@Y@m@d@H/ice"
data = f"{prefix}/{ice_res}/cice5_model_{ice_res_dec}.res_@Y@m@d@H.nc"
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
# Wave ICs
if self.app_config.do_wave:
prefix = f"{cpl_ic['BASE_CPLIC']}/{cpl_ic['CPL_WAVIC']}/@Y@m@d@H/wav"
for wave_grid in self._configs['waveinit']['waveGRD'].split():
data = f"{prefix}/{wave_grid}/@Y@m@d.@H0000.restart.{wave_grid}"
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('coupled_ic')
task = create_wf_task('coupled_ic', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def getic(self):
files = ['INPUT/sfc_data.tile6.nc',
'RESTART/@Y@m@d.@H0000.sfcanl_data.tile6.nc']
deps = []
for file in files:
dep_dict = {'type': 'data', 'data': f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/{file}'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='nor', dep=deps)
resources = self.get_resource('getic')
task = create_wf_task('getic', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def init(self):
files = ['gfs.t@Hz.sanl',
'gfs.t@Hz.atmanl.nemsio',
'gfs.t@Hz.atmanl.nc',
'atmos/gfs.t@Hz.atmanl.nc',
'atmos/RESTART/@Y@m@d.@H0000.sfcanl_data.tile6.nc']
deps = []
for file in files:
dep_dict = {'type': 'data', 'data': f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/{file}'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='or', dep=deps)
if self.app_config.do_hpssarch:
dep_dict = {'type': 'task', 'name': f'{self.cdump}getic'}
dependencies.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=dependencies)
resources = self.get_resource('init')
task = create_wf_task('init', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def prep(self):
suffix = self._base["SUFFIX"]
dump_suffix = self._base["DUMP_SUFFIX"]
gfs_cyc = self._base["gfs_cyc"]
dmpdir = self._base["DMPDIR"]
gfs_enkf = True if self.app_config.do_hybvar and 'gfs' in self.app_config.eupd_cdumps else False
deps = []
dep_dict = {'type': 'metatask', 'name': f'{"gdas"}post', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
data = f'&ROTDIR;/gdas.@Y@m@d/@H/atmos/gdas.t@Hz.atmf009{suffix}'
dep_dict = {'type': 'data', 'data': data, 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
data = f'{dmpdir}/{self.cdump}{dump_suffix}.@Y@m@d/@H/{self.cdump}.t@Hz.updated.status.tm00.bufr_d'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
cycledef = self.cdump
if self.cdump in ['gfs'] and gfs_enkf and gfs_cyc != 4:
cycledef = 'gdas'
resources = self.get_resource('prep')
task = create_wf_task('prep', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies,
cycledef=cycledef)
return task
def waveinit(self):
resources = self.get_resource('waveinit')
dependencies = None
if self.app_config.mode in ['cycled']:
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}prep'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'cycleexist', 'condition': 'not', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='or', dep=deps)
task = create_wf_task('waveinit', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def waveprep(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}waveinit'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('waveprep')
task = create_wf_task('waveprep', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def aerosol_init(self):
deps = []
# Files from current cycle
files = ['gfs_ctrl.nc'] + [f'gfs_data.tile{tile}.nc' for tile in range(1, self.n_tiles + 1)]
for file in files:
data = f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/atmos/INPUT/{file}'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
# Calculate offset based on CDUMP = gfs | gdas
interval = None
if self.cdump in ['gfs']:
interval = self._base['INTERVAL_GFS']
elif self.cdump in ['gdas']:
interval = self._base['INTERVAL']
offset = f'-{interval}'
# Previous cycle
dep_dict = {'type': 'cycleexist', 'offset': offset}
deps.append(rocoto.add_dependency(dep_dict))
# Files from previous cycle
files = [f'@Y@m@d.@H0000.fv_core.res.nc'] + \
[f'@Y@m@d.@H0000.fv_core.res.tile{tile}.nc' for tile in range(1, self.n_tiles + 1)] + \
[f'@Y@m@d.@H0000.fv_tracer.res.tile{tile}.nc' for tile in range(1, self.n_tiles + 1)]
for file in files:
data = [f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/atmos/RERUN_RESTART/', file]
dep_dict = {'type': 'data', 'data': data, 'offset': [offset, None]}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('aerosol_init')
task = create_wf_task('aerosol_init', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def anal(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}prep'}
deps.append(rocoto.add_dependency(dep_dict))
if self.app_config.do_hybvar:
dep_dict = {'type': 'metatask', 'name': f'{"gdas"}epmn', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
else:
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('anal')
task = create_wf_task('anal', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def sfcanl(self):
deps = []
if self.app_config.do_jedivar:
dep_dict = {'type': 'task', 'name': f'{self.cdump}atmanalrun'}
else:
dep_dict = {'type': 'task', 'name': f'{self.cdump}anal'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('sfcanl')
task = create_wf_task('sfcanl', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def analcalc(self):
deps = []
if self.app_config.do_jedivar:
dep_dict = {'type': 'task', 'name': f'{self.cdump}atmanalrun'}
else:
dep_dict = {'type': 'task', 'name': f'{self.cdump}anal'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'task', 'name': f'{self.cdump}sfcanl'}
deps.append(rocoto.add_dependency(dep_dict))
if self.app_config.do_hybvar and self.cdump in ['gdas']:
dep_dict = {'type': 'task', 'name': f'{"gdas"}echgres', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('analcalc')
task = create_wf_task('analcalc', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def analdiag(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}anal'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'cycleexist', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('analdiag')
task = create_wf_task('analdiag', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def atmanalprep(self):
suffix = self._base["SUFFIX"]
dump_suffix = self._base["DUMP_SUFFIX"]
gfs_cyc = self._base["gfs_cyc"]
dmpdir = self._base["DMPDIR"]
do_gfs_enkf = True if self.app_config.do_hybvar and 'gfs' in self.app_config.eupd_cdumps else False
deps = []
dep_dict = {'type': 'metatask', 'name': 'gdaspost', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
data = f'&ROTDIR;/gdas.@Y@m@d/@H/atmos/gdas.t@Hz.atmf009{suffix}'
dep_dict = {'type': 'data', 'data': data, 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
data = f'{dmpdir}/{self.cdump}{dump_suffix}.@Y@m@d/@H/{self.cdump}.t@Hz.updated.status.tm00.bufr_d'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
cycledef = self.cdump
if self.cdump in ['gfs'] and do_gfs_enkf and gfs_cyc != 4:
cycledef = 'gdas'
resources = self.get_resource('atmanalprep')
task = create_wf_task('atmanalprep', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies,
cycledef=cycledef)
return task
def atmanalrun(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}atmanalprep'}
deps.append(rocoto.add_dependency(dep_dict))
if self.app_config.do_hybvar:
dep_dict = {'type': 'metatask', 'name': 'gdasepmn', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
else:
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('atmanalrun')
task = create_wf_task('atmanalrun', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def atmanalpost(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}atmanalrun'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'cycleexist', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('atmanalpost')
task = create_wf_task('atmanalpost', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def gldas(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}sfcanl'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'cycleexist', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('gldas')
task = create_wf_task('gldas', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def fcst(self):
fcst_map = {'forecast-only': self._fcst_forecast_only,
'cycled': self._fcst_cycled}
try:
task = fcst_map[self.app_config.mode]
except KeyError:
raise NotImplementedError(f'{self.app_config.mode} is not a valid type.\n' +
'Currently supported forecast types are:\n' +
f'{" | ".join(fcst_map.keys())}')
return task
@property
def _fcst_forecast_only(self):
dependencies = []
deps = []
data = f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/atmos/INPUT/sfc_data.tile6.nc'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
data = f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/atmos/RESTART/@Y@m@d.@H0000.sfcanl_data.tile6.nc'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
dependencies.append(rocoto.create_dependency(dep_condition='or', dep=deps))
if self.app_config.do_wave and self.cdump in self.app_config.wave_cdumps:
wave_job = 'waveprep' if self.app_config.model_app in ['ATMW'] else 'waveinit'
dep_dict = {'type': 'task', 'name': f'{self.cdump}{wave_job}'}
dependencies.append(rocoto.add_dependency(dep_dict))
if self.app_config.do_aero:
# Calculate offset based on CDUMP = gfs | gdas
interval = None
if self.cdump in ['gfs']:
interval = self._base['INTERVAL_GFS']
elif self.cdump in ['gdas']:
interval = self._base['INTERVAL']
offset = f'-{interval}'
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}aerosol_init'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'cycleexist', 'condition': 'not', 'offset': offset}
deps.append(rocoto.add_dependency(dep_dict))
dependencies.append(rocoto.create_dependency(dep_condition='or', dep=deps))
dependencies = rocoto.create_dependency(dep_condition='and', dep=dependencies)
resources = self.get_resource('fcst')
task = create_wf_task('fcst', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
@property
def _fcst_cycled(self):
dep_dict = {'type': 'task', 'name': f'{self.cdump}sfcanl'}
dep = rocoto.add_dependency(dep_dict)
dependencies = rocoto.create_dependency(dep=dep)
if self.app_config.do_gldas and self.cdump in ['gdas']:
dep_dict = {'type': 'task', 'name': f'{self.cdump}gldas'}
dependencies.append(rocoto.add_dependency(dep_dict))
if self.app_config.do_wave and self.cdump in self.app_config.wave_cdumps:
dep_dict = {'type': 'task', 'name': f'{self.cdump}waveprep'}
dependencies.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=dependencies)
if self.cdump in ['gdas']:
dep_dict = {'type': 'cycleexist', 'condition': 'not', 'offset': '-06:00:00'}
dependencies.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='or', dep=dependencies)
resources = self.get_resource('fcst')
task = create_wf_task('fcst', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def post(self):
add_anl_to_post = False
if self.app_config.mode in ['cycled']:
add_anl_to_post = True
return self._post_task('post', add_anl_to_post=add_anl_to_post)
def ocnpost(self):
return self._post_task('ocnpost', add_anl_to_post=False)
def _post_task(self, task_name, add_anl_to_post=False):
if task_name not in ['post', 'ocnpost']:
raise KeyError(f'Invalid post-processing task: {task_name}')
if task_name in ['ocnpost']:
add_anl_to_post = False
def _get_postgroups(cdump, config, add_anl=False):
fhmin = config['FHMIN']
fhmax = config['FHMAX']
fhout = config['FHOUT']
# Get a list of all forecast hours
fhrs = []
if cdump in ['gdas']:
fhrs = range(fhmin, fhmax + fhout, fhout)
elif cdump in ['gfs']:
fhmax = np.max(
[config['FHMAX_GFS_00'], config['FHMAX_GFS_06'], config['FHMAX_GFS_12'], config['FHMAX_GFS_18']])
fhout = config['FHOUT_GFS']
fhmax_hf = config['FHMAX_HF_GFS']
fhout_hf = config['FHOUT_HF_GFS']
fhrs_hf = range(fhmin, fhmax_hf + fhout_hf, fhout_hf)
fhrs = list(fhrs_hf) + list(range(fhrs_hf[-1] + fhout, fhmax + fhout, fhout))
npostgrp = config['NPOSTGRP']
ngrps = npostgrp if len(fhrs) > npostgrp else len(fhrs)
fhrs = [f'f{fhr:03d}' for fhr in fhrs]
fhrs = np.array_split(fhrs, ngrps)
fhrs = [fhr.tolist() for fhr in fhrs]
anl = ['anl'] if add_anl else []
grp = ' '.join(anl + [f'_{fhr[0]}-{fhr[-1]}' for fhr in fhrs])
dep = ' '.join(anl + [fhr[-1] for fhr in fhrs])
lst = ' '.join(anl + ['_'.join(fhr) for fhr in fhrs])
return grp, dep, lst
deps = []
data = f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/atmos/{self.cdump}.t@Hz.log#dep#.txt'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'task', 'name': f'{self.cdump}fcst'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='or', dep=deps)
postenvars = self.envars.copy()
postenvar_dict = {'FHRGRP': '#grp#',
'FHRLST': '#lst#',
'ROTDIR': self._base.get('ROTDIR')}
for key, value in postenvar_dict.items():
postenvars.append(rocoto.create_envar(name=key, value=str(value)))
varname1, varname2, varname3 = 'grp', 'dep', 'lst'
varval1, varval2, varval3 = _get_postgroups(self.cdump, self._configs[task_name], add_anl=add_anl_to_post)
vardict = {varname2: varval2, varname3: varval3}
resources = self.get_resource(task_name)
task = create_wf_task(task_name, resources, cdump=self.cdump, envar=postenvars, dependency=dependencies,
metatask=task_name, varname=varname1, varval=varval1, vardict=vardict)
return task
def wavepostsbs(self):
deps = []
for wave_grid in self._configs['wavepostsbs']['waveGRD'].split():
data = f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/wave/rundata/{self.cdump}wave.out_grd.{wave_grid}.@Y@m@d.@H0000'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('wavepostsbs')
task = create_wf_task('wavepostsbs', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def wavepostbndpnt(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}fcst'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('wavepostbndpnt')
task = create_wf_task('wavepostbndpnt', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def wavepostbndpntbll(self):
deps = []
data = f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/atmos/{self.cdump}.t@Hz.logf180.txt'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('wavepostbndpntbll')
task = create_wf_task('wavepostbndpntbll', resources, cdump=self.cdump, envar=self.envars,
dependency=dependencies)
return task
def wavepostpnt(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}fcst'}
deps.append(rocoto.add_dependency(dep_dict))
if self.app_config.do_wave_bnd:
dep_dict = {'type': 'task', 'name': f'{self.cdump}wavepostbndpntbll'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('wavepostpnt')
task = create_wf_task('wavepostpnt', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def wavegempak(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}wavepostsbs'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('wavegempak')
task = create_wf_task('wavegempak', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def waveawipsbulls(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}wavepostsbs'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'task', 'name': f'{self.cdump}wavepostpnt'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('waveawipsbulls')
task = create_wf_task('waveawipsbulls', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def waveawipsgridded(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}wavepostsbs'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('waeawipsgridded')
task = create_wf_task('waveawipsgridded', resources, cdump=self.cdump, envar=self.envars,
dependency=dependencies)
return task
def wafs(self):
return self._wafs_task('wafs')
def wafsgcip(self):
return self._wafs_task('wafsgcip')
def wafsgrib2(self):
return self._wafs_task('wafsgrib2')
def wafsgrib20p25(self):
return self._wafs_task('wafsgrib20p25')
def _wafs_task(self, task_name):
if task_name not in ['wafs', 'wafsgcip', 'wafsgrib2', 'wafsgrib20p25']:
raise KeyError(f'Invalid WAFS task: {task_name}')
deps = []
fhrlst = [6] + [*range(12, 36 + 3, 3)]
for fhr in fhrlst:
data = f'&ROTDIR;/{self.cdump}.@Y@m@d/@H/atmos/{self.cdump}.t@Hz.wafs.grb2if{fhr:03d}'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource(task_name)
task = create_wf_task(task_name, resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def wafsblending(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}wafsgrib2'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('wafsblending')
task = create_wf_task('wafsblending', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def wafsblending0p25(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}wafsgrib20p25'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('wafsblending0p25')
task = create_wf_task('wafsblending0p25', resources, cdump=self.cdump, envar=self.envars,
dependency=dependencies)
return task
def postsnd(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}fcst'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('postsnd')
task = create_wf_task('postsnd', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def awips(self):
def _get_awipsgroups(cdump, config):
fhmin = config['FHMIN']
fhmax = config['FHMAX']
fhout = config['FHOUT']
# Get a list of all forecast hours
fhrs = []
if cdump in ['gdas']:
fhrs = range(fhmin, fhmax + fhout, fhout)
elif cdump in ['gfs']:
fhmax = np.max(
[config['FHMAX_GFS_00'], config['FHMAX_GFS_06'], config['FHMAX_GFS_12'], config['FHMAX_GFS_18']])
fhout = config['FHOUT_GFS']
fhmax_hf = config['FHMAX_HF_GFS']
fhout_hf = config['FHOUT_HF_GFS']
if fhmax > 240:
fhmax = 240
if fhmax_hf > 240:
fhmax_hf = 240
fhrs_hf = list(range(fhmin, fhmax_hf + fhout_hf, fhout_hf))
fhrs = fhrs_hf + list(range(fhrs_hf[-1] + fhout, fhmax + fhout, fhout))
nawipsgrp = config['NAWIPSGRP']
ngrps = nawipsgrp if len(fhrs) > nawipsgrp else len(fhrs)
fhrs = [f'f{fhr:03d}' for fhr in fhrs]
fhrs = np.array_split(fhrs, ngrps)
fhrs = [fhr.tolist() for fhr in fhrs]
grp = ' '.join([f'_{fhr[0]}-{fhr[-1]}' for fhr in fhrs])
dep = ' '.join([fhr[-1] for fhr in fhrs])
lst = ' '.join(['_'.join(fhr) for fhr in fhrs])
return grp, dep, lst
deps = []
dep_dict = {'type': 'metatask', 'name': f'{self.cdump}post'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
awipsenvars = self.envars.copy()
awipsenvar_dict = {'FHRGRP': '#grp#',
'FHRLST': '#lst#',
'ROTDIR': self._base.get('ROTDIR')}
for key, value in awipsenvar_dict.items():
awipsenvars.append(rocoto.create_envar(name=key, value=str(value)))
varname1, varname2, varname3 = 'grp', 'dep', 'lst'
varval1, varval2, varval3 = _get_awipsgroups(self.cdump, self._configs['awips'])
vardict = {varname2: varval2, varname3: varval3}
resources = self.get_resource('awips')
task = create_wf_task('awips', resources, cdump=self.cdump, envar=awipsenvars, dependency=dependencies,
metatask='awips', varname=varname1, varval=varval1, vardict=vardict)
return task
def gempak(self):
deps = []
dep_dict = {'type': 'metatask', 'name': f'{self.cdump}post'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('gempak')
task = create_wf_task('gempak', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def vrfy(self):
deps = []
dep_dict = {'type': 'metatask', 'name': f'{self.cdump}post'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('vrfy')
task = create_wf_task('vrfy', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def metp(self):
deps = []
dep_dict = {'type': 'metatask', 'name': f'{self.cdump}post'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
metpenvars = self.envars.copy()
metpenvar_dict = {'SDATE_GFS': self._base.get('SDATE_GFS'),
# TODO - in Forecast-only, this is `SDATE` on the RHS
'METPCASE': '#metpcase#'}
for key, value in metpenvar_dict.items():
metpenvars.append(rocoto.create_envar(name=key, value=str(value)))
varname1 = 'metpcase'
varval1 = 'g2g1 g2o1 pcp1'
resources = self.get_resource('metp')
task = create_wf_task('metp', resources, cdump=self.cdump, envar=metpenvars, dependency=dependencies,
metatask='metp', varname=varname1, varval=varval1)
return task
def arch(self):
deps = []
if self.app_config.do_vrfy:
dep_dict = {'type': 'task', 'name': f'{self.cdump}vrfy'}
deps.append(rocoto.add_dependency(dep_dict))
if self.app_config.do_metp and self.cdump in ['gfs']:
dep_dict = {'type': 'metatask', 'name': f'{self.cdump}metp'}
deps.append(rocoto.add_dependency(dep_dict))
if self.app_config.do_wave:
dep_dict = {'type': 'task', 'name': f'{self.cdump}wavepostsbs'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'task', 'name': f'{self.cdump}wavepostpnt'}
deps.append(rocoto.add_dependency(dep_dict))
if self.app_config.do_wave_bnd:
dep_dict = {'type': 'task', 'name': f'{self.cdump}wavepostbndpnt'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('arch')
task = create_wf_task('arch', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
# Start of ensemble tasks
def eobs(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}prep'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'metatask', 'name': f'{"gdas"}epmn', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('eobs')
task = create_wf_task('eobs', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def eomg(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}eobs'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
eomgenvars = self.envars.copy()
eomgenvars.append(rocoto.create_envar(name='ENSGRP', value='#grp#'))
groups = self._get_hybgroups(self._base['NMEM_ENKF'], self._configs['eobs']['NMEM_EOMGGRP'])
resources = self.get_resource('eomg')
task = create_wf_task('eomg', resources, cdump=self.cdump, envar=eomgenvars, dependency=dependencies,
metatask='eomn', varname='grp', varval=groups)
return task
def ediag(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}eobs'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('ediag')
task = create_wf_task('ediag', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def eupd(self):
deps = []
if self.app_config.lobsdiag_forenkf:
dep_dict = {'type': 'task', 'name': f'{self.cdump}ediag'}
else:
dep_dict = {'type': 'metatask', 'name': f'{self.cdump}eomn'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('eupd')
task = create_wf_task('eupd', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def atmensanalprep(self):
suffix = self._base["SUFFIX"]
dump_suffix = self._base["DUMP_SUFFIX"]
gfs_cyc = self._base["gfs_cyc"]
dmpdir = self._base["DMPDIR"]
do_gfs_enkf = True if self.app_config.do_hybvar and 'gfs' in self.app_config.eupd_cdumps else False
deps = []
dep_dict = {'type': 'metatask', 'name': 'gdaspost', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
data = f'&ROTDIR;/gdas.@Y@m@d/@H/atmos/gdas.t@Hz.atmf009{suffix}'
dep_dict = {'type': 'data', 'data': data, 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
data = f'{dmpdir}/{self.cdump}{dump_suffix}.@Y@m@d/@H/{self.cdump}.t@Hz.updated.status.tm00.bufr_d'
dep_dict = {'type': 'data', 'data': data}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
cycledef = self.cdump
if self.cdump in ['gfs'] and do_gfs_enkf and gfs_cyc != 4:
cycledef = 'gdas'
resources = self.get_resource('atmensanalprep')
task = create_wf_task('atmensanalprep', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies,
cycledef=cycledef)
return task
def atmensanalrun(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}atmensanalprep'}
deps.append(rocoto.add_dependency(dep_dict))
dep_dict = {'type': 'metatask', 'name': 'gdasepmn', 'offset': '-06:00:00'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep_condition='and', dep=deps)
resources = self.get_resource('atmensanalrun')
task = create_wf_task('atmensanalrun', resources, cdump=self.cdump, envar=self.envars, dependency=dependencies)
return task
def atmensanalpost(self):
deps = []
dep_dict = {'type': 'task', 'name': f'{self.cdump}atmensanalrun'}
deps.append(rocoto.add_dependency(dep_dict))
dependencies = rocoto.create_dependency(dep=deps)
resources = self.get_resource('atmensanalpost')