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The current VCFReader implementation depends on cyvcf2 to parse the underlying file, and then converts each row into a data frame array. However, this is fairly slow. For vcfio to be more useful in VCF annotation flows, the parser needs to be ~5x faster than it is currently.
The text was updated successfully, but these errors were encountered:
The current VCFReader implementation depends on
cyvcf2
to parse the underlying file, and then converts each row into a data frame array. However, this is fairly slow. Forvcfio
to be more useful in VCF annotation flows, the parser needs to be ~5x faster than it is currently.The text was updated successfully, but these errors were encountered: