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readme.txt
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====================================================================
smsMap 04/01/2019
ver1.0.0 ICI/LIFT, China
====================================================================
System Requirements
===================
Software Requirements
---------------------
The smsMap is supported on the following operating systems
Linux
Windows 7
Windows 10
Hardware Requirements/Recommendations
-------------------------------------
Intel Core i3 2100 or later for Windows
Color display capable of 1024 X 768 pixel resolution
Memory Requirements/Recommendations
-------------------------------------
smsMap requires approximately
2G of available disk space on the drive or partition.
smsMap requires a minimum of
8G of RAM for mapping long noisy SMS reads.
User's Guide
=================
Input Sequences Requirements
----------------------------
Input file requires fasta or fastq format
Execute Step
------------
Step 1: compile codes using make command
Step 2: ./locate or ./smsMap then come out options reuired
A running example
-----------
./locate --index genome.fa
./locate --search genome.fa --seq reads.fa >pos.txt
./smsMap --seq reads.fa --genome genome.fa --pos pos.txt --out smsMap_aligned.txt
The final mapping file is smsMap_aligned.txt
Copyright Notice
===================
Software, documentation and related materials:
Copyright (c) 2019-2021
Institute of Control & Information(ICI), Northwestern Polytechnical University, China
Key Laboratory of Information Fusion Technology(LIFT), Ministry of Education, China
All rights reserved.