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DIA db split option #1793

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liorlobel opened this issue Sep 24, 2024 · 1 comment
Open

DIA db split option #1793

liorlobel opened this issue Sep 24, 2024 · 1 comment
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@liorlobel
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Dear fragpipe team,

Although I'm running the DIA_DIA-Umpire_SpecLib_Quant workflow, I get an error about incompatibility with database splitting.

Please set the split database to 1. For DIA and DIA-Lib data types, you can also use the DIA-Umpire based DIA workflow (DIA_DIA-Umpire_SpecLib_Quant workflow), which supports the split database option.

I understand this is ongoing work, but do you have any timeline for adding the feature? I'm asking because we are planning a metaproteomic run with an extensive database, and if this option isn't available, we will run DDA and not DIA.

Thanks again for this fantastic software.

Best,

Lior

@fcyu
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fcyu commented Sep 24, 2024

It was due to some bugs in @guoci 's Python script. Hopefully, he will have time to revisit them.

Best,

Fengchao

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