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Add ability to visualize the tree directly from ViralWasm-Epi? #1

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niemasd opened this issue Sep 15, 2023 · 2 comments
Open

Add ability to visualize the tree directly from ViralWasm-Epi? #1

niemasd opened this issue Sep 15, 2023 · 2 comments
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enhancement New feature or request

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@niemasd
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niemasd commented Sep 15, 2023

Hey, Daniel! I use a tool called Taxonium to visualize phylogenetic trees. It seems like Taxonium has a React component; would there be any way to use this to create a "Visualize Tree" button if the user performs phylogenetic inference, which visualizes the tree using Taxonium?

Note that this isn't urgent at all: users can already download the Newick tree from ViralWasm-Epi and then just open it in Taxonium. This would just be a nice convenient one-click solution to go from analysis results to visualization

@niemasd
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niemasd commented Sep 15, 2023

@theosanderson, the developer of Taxonium, has given us the green light to bug him if/when you try it out 😄 theosanderson/taxonium#530 (comment)

@daniel-ji
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Hi Niema,

Sorry for just seeing this now - I forget to check the issues tab - I'll definitely take a look, thanks!

Best,
Daniel

@niemasd niemasd added the enhancement New feature or request label Oct 3, 2023
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