pathways.yml

acacae_adam:
  L-alanine:
  - R_GLCpts
  - R_3AIBT2_rev
  L-arginine:
  - R_GLCabcpp
  - R_ARGt2r
  L-asparagine:
  - R_GLCabcpp
  - R_ALAALAr_rev
  - R_ASNS1
  L-aspartate:
  - R_GLCabcpp
  - R_ASPt2pp
  L-cysteine:
  - R_GLCabcpp
  - R_SHSL2r_rev
  - R_CYS
  L-glutamate:
  - R_GLCabcpp
  - R_GLUDy_rev
  L-glutamine:
  - R_GLCabcpp
  - R_PYDXS_rev
  L-histidine:
  - R_GLCabcpp
  - R_5DKGR_rev
  - R_HISTD
  L-isoleucine:
  - R_GLCabcpp
  - R_ILEDHr_rev
  L-leucine:
  - R_GLCabcpp
  - R_GLUDy_rev
  - R_LEUTA_rev
  L-lysine:
  - R_GLCabcpp
  - R_DAPDC
  L-methionine:
  - R_GLCabcpp
  - R_ALAALAr_rev
  - R_METabc
  L-phenylalanine:
  - R_GLCabcpp
  - R_ALAALAr_rev
  - R_PHEabc
  L-proline:
  - R_GLCabcpp
  - R_P5CR
  L-serine:
  - R_GLCabcpp
  - R_ATPS4rpp
  - R_CYS_rev
  L-threonine:
  - R_GLCabcpp
  - R_THRt2pp
  L-tryptophan:
  - R_GLCabcpp
  - R_ALAALAr_rev
  - R_TRPabc
  L-tyrosine:
  - R_GLCabcpp
  - R_ALAALAr_rev
  - R_TYRabc
  L-valine:
  - R_GLCabcpp
  - R_VALt2r
  glycine:
  - R_GLCabcpp
  - R_GLYt2r
acacae_cimIV:
  L-alanine:
  - R_GLCabcpp
  - R_ALAt2r
  L-arginine:
  - R_GLCabcpp
  - R_ARGt2r
  L-asparagine:
  - R_GLCabcpp
  - R_ALAALAr_rev
  - R_ASNS1
  L-aspartate:
  - R_GLCabcpp
  - R_ASPt2pp
  L-cysteine:
  - R_GLCabcpp
  - R_SHSL2r_rev
  - R_CYS
  L-glutamate:
  - R_GLCabcpp
  - R_GLUDy_rev
  L-glutamine:
  - R_GLCabcpp
  - R_PYDXS_rev
  L-histidine:
  - R_GLCabcpp
  - R_5DKGR_rev
  - R_HISTD
  L-isoleucine:
  - R_GLCabcpp
  - R_ILEDHr_rev
  L-leucine:
  - R_GLCabcpp
  - R_GLUDy_rev
  - R_LEUTA_rev
  L-lysine:
  - R_GLCabcpp
  - R_DAPDC
  L-methionine:
  - R_GLCabcpp
  - R_CYTOM_rev
  - R_HCYSMT
  L-phenylalanine:
  - R_GLCabcpp
  - R_ALAALAr_rev
  - R_PHEabc
  L-proline:
  - R_GLCabcpp
  - R_P5CR
  L-serine:
  - R_GLCabcpp
  - R_ATPS4rpp
  - R_CYS_rev
  L-threonine:
  - R_GLCabcpp
  - R_THRt2pp
  L-tryptophan:
  - R_GLCabcpp
  - R_ALAALAr_rev
  - R_TRPabc
  L-tyrosine:
  - R_GLCabcpp
  - R_ALAALAr_rev
  - R_TYRabc
  L-valine:
  - R_GLCabcpp
  - R_VALt2rpp
  glycine:
  - R_GLCabcpp
  - R_GLYt2r
blongum_adam:
  L-alanine:
  - R_GLCpts
  - R_ALATA_L_rev
  L-arginine:
  - R_MAL6PG_rev
  - R_ARGabc
  L-asparagine:
  - R_MAL6PG_rev
  - R_ASNabc
  L-aspartate:
  - R_GLCabc
  - R_ASPK_rev
  L-cysteine:
  - R_MAL6PG_rev
  - R_CYSTGL
  L-glutamate:
  - R_GLCabc
  - R_GDH1_rev
  L-glutamine:
  - R_MAL6PG_rev
  - R_GLNabc
  L-histidine:
  - R_MAL6PG_rev
  - R_HISTD
  L-isoleucine:
  - R_GLCabc
  - R_ILEt2r
  L-leucine:
  - R_GLCabc
  - R_GDH1_rev
  - R_LEUTA_rev
  L-lysine:
  - R_GLCabc
  - R_CADVtpp
  L-methionine:
  - R_MAL6PG_rev
  - R_METabc
  L-phenylalanine:
  - R_MAL6PG_rev
  - R_PHEabc
  L-proline:
  - R_GLCabc
  - R_P5CR
  L-serine:
  - R_MAL6PG_rev
  - R_GHMT2r_rev
  L-threonine:
  - R_MAL6PG_rev
  - R_PTHRP
  L-tryptophan:
  - R_MAL6PG_rev
  - R_TRPabc
  L-tyrosine:
  - R_MAL6PG_rev
  - R_TYRabc
  L-valine:
  - R_GLCabc
  - R_VALt2r
  glycine:
  - R_GLCabc
  - R_PRAGSr_rev
blongum_cimIV:
  L-alanine:
  - R_MAL6PG_rev
  - R_ALAabc
  L-arginine:
  - R_MAL6PG_rev
  - R_ARGabc
  L-asparagine:
  - R_MAL6PG_rev
  - R_ASNabc
  L-aspartate:
  - R_GLCabcpp
  - R_ASPK_rev
  L-cysteine:
  - R_MAL6PG_rev
  - R_CYSTGL
  L-glutamate:
  - R_GLCabcpp
  - R_GDH1_rev
  L-glutamine:
  - R_MAL6PG_rev
  - R_GLNabc
  L-histidine:
  - R_GLCabcpp
  - R_HISt2r
  L-isoleucine:
  - R_GLCabcpp
  - R_ILEt2r
  L-leucine:
  - R_GLCabcpp
  - R_GDH1_rev
  - R_LEUTA_rev
  L-lysine:
  - R_GLCabcpp
  - R_CADVtpp
  L-methionine:
  - R_MAL6PG_rev
  - R_AHCi
  - R_HCYSMT
  L-phenylalanine:
  - R_MAL6PG_rev
  - R_PHEabc
  L-proline:
  - R_GLCabcpp
  - R_P5CR
  L-serine:
  - R_MAL6PG_rev
  - R_GHMT2r_rev
  L-threonine:
  - R_MAL6PG_rev
  - R_PTHRP
  L-tryptophan:
  - R_MAL6PG_rev
  - R_TRPabc
  L-tyrosine:
  - R_MAL6PG_rev
  - R_TYRabc
  L-valine:
  - R_GLCabcpp
  - R_GDH1_rev
  - R_VALTA_rev
  glycine:
  - R_GLCabcpp
  - R_PRAGSr_rev
bproducta_adam:
  L-alanine:
  - R_GLCabc
  - R_CYSLY3
  L-arginine:
  - R_BGLA_rev
  - R_ARGabc
  L-asparagine:
  - R_BGLA_rev
  - R_ASNS1
  L-aspartate:
  - R_BGLA_rev
  - R_ASNN
  L-cysteine:
  - R_BGLA_rev
  - R_CYSabc
  L-glutamate:
  - R_BGLA_rev
  - R_ASNS1
  L-glutamine:
  - R_BGLA_rev
  - R_GLNabc
  L-isoleucine:
  - R_GLCabc
  - R_ILEDHr_rev
  L-leucine:
  - R_BGLA_rev
  - R_ASNS1
  - R_LEUTA_rev
  L-lysine:
  - R_GLCabc
  - R_CADVtpp
  L-methionine:
  - R_BGLA_rev
  - R_METabc
  L-phenylalanine:
  - R_BGLA_rev
  - R_PHEabc
  L-proline:
  - R_GLCabc
  - R_P5CR
  L-serine:
  - R_BGLA_rev
  - R_GHMT2r_rev
  L-threonine:
  - R_BGLA_rev
  - R_PTHRP
  L-tryptophan:
  - R_BGLA_rev
  - R_TRPabc
  L-tyrosine:
  - R_BGLA_rev
  - R_TYRabc
  L-valine:
  - R_BGLA_rev
  - R_VALabc
  glycine:
  - R_BGLA_rev
  - R_GLYabc
bproducta_cimIV:
  L-alanine:
  - R_BGLA_rev
  - R_ALAabc
  L-arginine:
  - R_BGLA_rev
  - R_ARGabc
  L-asparagine:
  - R_BGLA_rev
  - R_ASNS1
  L-aspartate:
  - R_BGLA_rev
  - R_ASNN
  L-cysteine:
  - R_BGLA_rev
  - R_CYSabc
  L-glutamate:
  - R_BGLA_rev
  - R_ASNS1
  L-glutamine:
  - R_BGLA_rev
  - R_GLNabc
  L-isoleucine:
  - R_HEX1
  - R_ILEDHr_rev
  L-leucine:
  - R_BGLA_rev
  - R_ASNS1
  - R_LEUTA_rev
  L-lysine:
  - R_HEX1
  - R_CADVtpp
  L-methionine:
  - R_BGLA_rev
  - R_AHCi
  - R_HCYSMT
  L-phenylalanine:
  - R_BGLA_rev
  - R_PHEabc
  L-proline:
  - R_BGLA_rev
  - R_PROabc
  L-serine:
  - R_BGLA_rev
  - R_GHMT2r_rev
  L-threonine:
  - R_BGLA_rev
  - R_PTHRP
  L-tryptophan:
  - R_BGLA_rev
  - R_TRPabc
  L-tyrosine:
  - R_BGLA_rev
  - R_TYRabc
  L-valine:
  - R_BGLA_rev
  - R_VALabcpp
  glycine:
  - R_BGLA_rev
  - R_GLYabc
btheta_adam:
  L-alanine:
  - R_GLCt2
  - R_ALAD_L2
  L-arginine:
  - R_GLCt2
  - R_ALAALAr_rev
  - R_ARGabc
  L-asparagine:
  - R_GLCt2
  - R_ADA
  - R_ASNS2
  L-aspartate:
  - R_HEX1
  - R_ASPK_rev
  L-cysteine:
  - R_GLCt2
  - R_ALAALAr_rev
  - R_CYSabc
  L-glutamate:
  - R_GLCt2
  - R_GDH1_rev
  L-glutamine:
  - R_GLCt2
  - R_ADA
  - R_GLNS
  L-histidine:
  - R_GLCt2
  - R_5DKGR_rev
  - R_HISTD
  L-isoleucine:
  - R_GLCt2
  - R_ALAALAr_rev
  - R_ILEabc
  L-leucine:
  - R_GLCt2
  - R_GDH1_rev
  - R_LEUTA_rev
  L-lysine:
  - R_GLCt2
  - R_DAPDC
  L-methionine:
  - R_GLCt2
  - R_ALAALAr_rev
  - R_METabc
  L-phenylalanine:
  - R_GLCt2
  - R_ALAALAr_rev
  - R_PHEabc
  L-proline:
  - R_GLCt2
  - R_P5CR
  L-serine:
  - R_GLCt2
  - R_LSERDHr_rev
  L-threonine:
  - R_GLCt2
  - R_ALAALAr_rev
  - R_THRabc
  L-tryptophan:
  - R_GLCt2
  - R_2S6HCCi
  - R_TRPAS2_rev
  L-tyrosine:
  - R_GLCt2
  - R_ALAALAr_rev
  - R_TYRabc
  L-valine:
  - R_GLCt2
  - R_ALAALAr_rev
  - R_VALabc
  glycine:
  - R_GLCt2
  - R_PPRGL_rev
btheta_cimIV:
  L-alanine:
  - R_HEX1
  - R_ALAD_L2
  L-arginine:
  - R_HEX1
  - R_ARGDC
  - R_ARGAGMt7pp
  L-asparagine:
  - R_HEX1
  - R_ADA
  - R_ASNS2
  L-aspartate:
  - R_HEX1
  - R_ASPt2_3pp
  L-cysteine:
  - R_HEX1
  - R_ALAALAr_rev
  - R_CYSabc
  L-glutamate:
  - R_HEX1
  - R_GDH1_rev
  L-glutamine:
  - R_HEX1
  - R_GDH1_rev
  - R_GLNS
  L-histidine:
  - R_HEX1
  - R_5DKGR_rev
  - R_HISTD
  L-isoleucine:
  - R_HEX1
  - R_ALAALAr_rev
  - R_ILEabc
  L-leucine:
  - R_HEX1
  - R_GDH1_rev
  - R_LEUTA_rev
  L-lysine:
  - R_HEX1
  - R_DAPDC
  L-methionine:
  - R_HEX1
  - R_CYTOM_rev
  - R_HCYSMT
  L-phenylalanine:
  - R_HEX1
  - R_ALAALAr_rev
  - R_PHEabc
  L-proline:
  - R_HEX1
  - R_P5CR
  L-serine:
  - R_HEX1
  - R_LSERDHr_rev
  L-threonine:
  - R_HEX1
  - R_ALAALAr_rev
  - R_THRabc
  L-tryptophan:
  - R_HEX1
  - R_2S6HCCi
  - R_TRPAS2_rev
  L-tyrosine:
  - R_HEX1
  - R_ALAALAr_rev
  - R_TYRabc
  L-valine:
  - R_HEX1
  - R_GDH1_rev
  - R_VALTA_rev
  glycine:
  - R_HEX1
  - R_PPRGL_rev
cbuty_adam:
  L-alanine:
  - R_GLCpts
  - R_3AIBT2_rev
  L-arginine:
  - R_BGLA_rev
  - R_ARGabc
  L-asparagine:
  - R_BGLA_rev
  - R_ASNS1
  L-aspartate:
  - R_BGLA_rev
  - R_ASLP_rev
  L-cysteine:
  - R_BGLA_rev
  - R_CYSTGL
  L-glutamate:
  - R_BGLA_rev
  - R_ASNS1
  L-glutamine:
  - R_BGLA_rev
  - R_GLNabc
  L-histidine:
  - R_BGLA_rev
  - R_HISTD
  L-isoleucine:
  - R_BGLA_rev
  - R_ILEabc
  L-leucine:
  - R_BGLA_rev
  - R_ASNS1
  - R_LEUTA_rev
  L-lysine:
  - R_GLCabc
  - R_CADVtpp
  L-methionine:
  - R_BGLA_rev
  - R_METabc
  L-phenylalanine:
  - R_BGLA_rev
  - R_PHEabc
  L-proline:
  - R_GLCabc
  - R_P5CR
  L-serine:
  - R_BGLA_rev
  - R_GHMT2r_rev
  L-threonine:
  - R_BGLA_rev
  - R_PTHRP
  L-tryptophan:
  - R_BGLA_rev
  - R_TRPabc
  L-tyrosine:
  - R_BGLA_rev
  - R_TYRabc
  L-valine:
  - R_BGLA_rev
  - R_VALabc
  glycine:
  - R_BGLA_rev
  - R_GLYabc
cbuty_cimIV:
  L-alanine:
  - R_BGLA_rev
  - R_ALAabc
  L-arginine:
  - R_BGLA_rev
  - R_ARGabc
  L-asparagine:
  - R_BGLA_rev
  - R_ASNS1
  L-aspartate:
  - R_BGLA_rev
  - R_ASLP_rev
  L-cysteine:
  - R_BGLA_rev
  - R_CYSTGL
  L-glutamate:
  - R_BGLA_rev
  - R_ASNS1
  L-glutamine:
  - R_BGLA_rev
  - R_GLNabc
  L-histidine:
  - R_BGLA_rev
  - R_HISTD
  L-isoleucine:
  - R_HEX1
  - R_ILEDHr_rev
  L-leucine:
  - R_BGLA_rev
  - R_ASNS1
  - R_LEUTA_rev
  L-lysine:
  - R_BGLA_rev
  - R_LYSabc
  L-methionine:
  - R_HEX1
  - R_CYTOM_rev
  - R_HCYSMT
  L-phenylalanine:
  - R_BGLA_rev
  - R_PHEabc
  L-proline:
  - R_HEX1
  - R_P5CR
  L-serine:
  - R_BGLA_rev
  - R_GHMT2r_rev
  L-threonine:
  - R_BGLA_rev
  - R_PTHRP
  L-tryptophan:
  - R_BGLA_rev
  - R_TRPabc
  L-tyrosine:
  - R_BGLA_rev
  - R_TYRabc
  L-valine:
  - R_BGLA_rev
  - R_ALAabc
  - R_VPAMTr
  glycine:
  - R_BGLA_rev
  - R_GLYabc
ecoli_adam:
  L-alanine:
  - R_GLCabc
  - R_ALAt2pp
  L-arginine:
  - R_GLCabc
  - R_ARGt2r
  L-asparagine:
  - R_MAL6PG_rev
  - R_ASNS1
  L-aspartate:
  - R_GLCabc
  - R_ASPt2_2pp
  L-cysteine:
  - R_MAL6PG_rev
  - R_AMPTASECG
  L-glutamate:
  - R_GLCabc
  - R_GLUDxi_rev
  L-glutamine:
  - R_MAL6PG_rev
  - R_GLNabcpp
  L-histidine:
  - R_MAL6PG_rev
  - R_HISTD
  L-isoleucine:
  - R_MAL6PG_rev
  - R_ILEabcpp
  L-leucine:
  - R_GLCabc
  - R_GLUDxi_rev
  - R_LEUTA_rev
  L-lysine:
  - R_GLCabc
  - R_CADVtpp
  L-methionine:
  - R_GLCabc
  - R_METt3pp
  L-phenylalanine:
  - R_GLCabc
  - R_PHEt2rpp
  L-proline:
  - R_GLCabc
  - R_1P2CBXLR
  L-serine:
  - R_GLCabc
  - R_LSERDHr_rev
  L-threonine:
  - R_MAL6PG_rev
  - R_THRS
  L-tryptophan:
  - R_GLCpts
  - R_TRPAS2_rev
  L-tyrosine:
  - R_GLCabc
  - R_TYRt2rpp
  L-valine:
  - R_MAL6PG_rev
  - R_VALabcpp
  glycine:
  - R_GLCabc
  - R_GLYt2pp
ecoli_cimIV:
  L-alanine:
  - R_HEX1
  - R_ALAt2pp
  L-arginine:
  - R_HEX1
  - R_ARGt2r
  L-asparagine:
  - R_MAL6PG_rev
  - R_ASNS1
  L-aspartate:
  - R_HEX1
  - R_ASPt2_2pp
  L-cysteine:
  - R_HEX1
  - R_CYSt2r
  L-glutamate:
  - R_HEX1
  - R_GLUDxi_rev
  L-glutamine:
  - R_MAL6PG_rev
  - R_GLNabcpp
  L-histidine:
  - R_MAL6PG_rev
  - R_HISTD
  L-isoleucine:
  - R_HEX1
  - R_ILEt2rpp
  L-leucine:
  - R_HEX1
  - R_GLUDxi_rev
  - R_LEUTA_rev
  L-lysine:
  - R_HEX1
  - R_CADVtpp
  L-methionine:
  - R_HEX1
  - R_METt3pp
  L-phenylalanine:
  - R_HEX1
  - R_PHEt2rpp
  L-proline:
  - R_HEX1
  - R_1P2CBXLR
  L-serine:
  - R_HEX1
  - R_LSERDHr_rev
  L-threonine:
  - R_HEX1
  - R_THRt2pp
  L-tryptophan:
  - R_HEX1
  - R_TRPt2rpp
  L-tyrosine:
  - R_HEX1
  - R_TYRt2rpp
  L-valine:
  - R_HEX1
  - R_VALt2rpp
  glycine:
  - R_HEX1
  - R_GLYt2pp
eramosum_adam:
  L-alanine:
  - R_BGLA_rev
  - R_LALGP
  L-arginine:
  - R_BGLA_rev
  - R_ARGabc
  L-asparagine:
  - R_BGLA_rev
  - R_ASNS1
  L-aspartate:
  - R_BGLA_rev
  - R_ASNN
  L-cysteine:
  - R_BGLA_rev
  - R_CYSTGL
  L-glutamate:
  - R_BGLA_rev
  - R_ASNS1
  L-glutamine:
  - R_BGLA_rev
  - R_GLNabc
  L-histidine:
  - R_BGLA_rev
  - R_HISTD
  L-isoleucine:
  - R_GLCabc
  - R_ILEDHr_rev
  L-leucine:
  - R_BGLA_rev
  - R_ASNS1
  - R_LEUTA_rev
  L-lysine:
  - R_GLCabc
  - R_CADVtpp
  L-methionine:
  - R_BGLA_rev
  - R_METabc
  L-phenylalanine:
  - R_BGLA_rev
  - R_PHEabc
  L-proline:
  - R_GLCabc
  - R_P5CR
  L-serine:
  - R_BGLA_rev
  - R_GHMT2r_rev
  L-threonine:
  - R_BGLA_rev
  - R_PTHRP
  L-tryptophan:
  - R_BGLA_rev
  - R_TRPabc
  L-tyrosine:
  - R_BGLA_rev
  - R_TYRabc
  L-valine:
  - R_BGLA_rev
  - R_VALabc
  glycine:
  - R_BGLA_rev
  - R_GLYGLYCNc
eramosum_cimIV:
  L-alanine:
  - R_GLCptspp
  - R_ALATA_L_rev
  L-arginine:
  - R_BGLA_rev
  - R_ARGabc
  L-asparagine:
  - R_BGLA_rev
  - R_ASNS1
  L-aspartate:
  - R_BGLA_rev
  - R_ASNN
  L-cysteine:
  - R_BGLA_rev
  - R_CYSTGL
  L-glutamate:
  - R_BGLA_rev
  - R_ASNS1
  L-glutamine:
  - R_BGLA_rev
  - R_GLNabc
  L-histidine:
  - R_BGLA_rev
  - R_HISTD
  L-isoleucine:
  - R_BGLA_rev
  - R_ILEabc
  L-leucine:
  - R_BGLA_rev
  - R_ASNS1
  - R_LEUTA_rev
  L-lysine:
  - R_GLCabcpp
  - R_CADVtpp
  L-methionine:
  - R_GLCabcpp
  - R_CYTOM_rev
  - R_HCYSMT
  L-phenylalanine:
  - R_BGLA_rev
  - R_PHEabc
  L-proline:
  - R_GLCabcpp
  - R_P5CR
  L-serine:
  - R_BGLA_rev
  - R_GHMT2r_rev
  L-threonine:
  - R_BGLA_rev
  - R_PTHRP
  L-tryptophan:
  - R_BGLA_rev
  - R_TRPabc
  L-tyrosine:
  - R_BGLA_rev
  - R_TYRabc
  L-valine:
  - R_BGLA_rev
  - R_ALAabc
  - R_VPAMTr
  glycine:
  - R_BGLA_rev
  - R_GLYGLYCNc
lplantarum_adam: {}
lplantarum_cimIV: {}