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index.html
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<html>
<head>
<title>HERMES</title>
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<link rel="stylesheet" type="text/css" href="css/bootstrap.min.css" />
<link rel="stylesheet" type="text/css" href="css/bootstrap-theme.min.css" />
<link rel="stylesheet" type="text/css" href="css/bootstrap-flat.min.css" />
<link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/responsive/1.0.5/css/dataTables.responsive.css" />
<link rel="stylesheet" type="text/css" href="css/jquery.dataTables.min.css" />
<link rel="stylesheet" type="text/css" href="css/jquery.dataTables.colVis.css" />
<link rel="stylesheet" type="text/css" href="css/hermes.dataTables.css" />
<link rel="stylesheet" type="text/css" href="css/chart.css" />
<link rel="stylesheet" type="text/css" href="css/font-awesome.min.css" />
<link rel="stylesheet" type="text/css" href="css/update.css" />
<script type="text/javascript" src="js/jquery-1.11.2.min.js"></script>
<script type="text/javascript" src="js/bootstrap.min.js"></script>
<script type="text/javascript" src="js/knockout-3.1.0.js"></script>
<script type="text/javascript" src="js/model.js"></script>
<script type="text/javascript" src="js/lodash.min.js"></script>
<script type="text/javascript" src="js/knockout.dataTables.binding.js"></script>
<script type="text/javascript" src="js/knockout.lineChart.binding.js"></script>
<script type="text/javascript" src="js/knockout.mapping.min.js"></script>
<script type="text/javascript" src="js/director.min.js"></script>
<script type="text/javascript" src="js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="js/jquery.dataTables.colVis.min.js"></script>
<script type="text/javascript" src="https://cdn.datatables.net/responsive/1.0.5/js/dataTables.responsive.js"></script>
<script type="text/javascript" src="js/jnj.facets.js"></script>
<script type="text/javascript" src="js/metatrix.js"></script>
<script type="text/javascript" src="js/d3.min.js"></script>
<script type="text/javascript" src="js/d3.tip.js"></script>
<script type="text/javascript" src="js/jnj.chart.js"></script>
<script type="text/javascript" src="js/config.js"></script>
<script type="text/javascript" src="js/visualization.packinghiearchy.js"></script>
<script type="text/javascript" src="js/app.js"></script>
<script type="text/javascript" src="js/reporting.js"></script>
<script type="text/javascript" src="js/colorbrewer.js"></script>
</head>
<body>
<div id="wrapperLeftMenu">
<div id="wrapperLogo"><img src="images/ohdsi.png">Hermes</div>
<ul>
<li>
<a href="#/search"><i class="fa fa-search"></i>Vocabulary Search</a>
</li>
<ul data-bind="foreach:recentSearch">
<li>
<a data-bind="attr: {href:'#/search/' + query}, text: caption + ' (' + resultLength + ')'"></a>
</li>
</ul>
<li>
<a href="#"><i class="fa fa-history"></i>Recent Concepts</a>
</li>
<ul data-bind="foreach:recentConcept">
<li>
<a data-bind="text: CONCEPT_NAME, attr: { href: '#/concept/' + CONCEPT_ID}"></a>
</li>
</ul>
<li data-bind="click: function() {currentView('conceptset'); document.location='#';}">
<a href="#"><i class="fa fa-shopping-cart"></i>Concept Set</a>
<span data-bind="if: pageModel.selectedConcepts().length > 0">
<span class="badge" data-bind="text:pageModel.selectedConcepts().length"></span>
</span>
</li>
<li data-bind="click: function() { currentView('import'); document.location='#' }">
<a href="#"><i class="fa fa-upload"></i>Import</a>
</li>
<!--
<li>
<a href="#/cohortdefinitions"><i class="fa fa-language"></i>Cohort Definitions</a>
</li>
<li>
<a href="#/reports"><i class="fa fa-area-chart"></i>Cohort Reporting</a>
</li>
<li>
<a href="#/calculations"><i class="fa fa-calculator"></i>Advanced Calculations</a>
</li>
<li>
<a href="#/jobs"><i class="fa fa-tasks"></i>Jobs</a>
</li>
-->
<li>
<a href="#/configure"><i class="fa fa-cogs"></i>Configure</a>
</li>
</ul>
</div>
<div id="wrapperMainWindow">
<div id="wrapperMainWindowContainer">
<div id="wrapperInitializing" data-bind="if: currentView() == 'initializing'">
<div class="wrapperTitle">
<i class="fa fa-refresh fa-spin"></i> Initializing...
</div>
</div>
<div id="wrapperLoading" data-bind="if: currentView() == 'loading'">
<div class="wrapperTitle">
<i class="fa fa-refresh fa-spin"></i> Loading...
</div>
</div>
<div data-bind="if: currentView() == 'jobs'">
<div class="wrapperTitle">
Jobs
</div>
<div id="wrapperJobs">
<table width="100%" class="conceptTable stripe compact hover" cellspacing="0" data-bind="dataTable:{
data: pageModel.jobs(),
options: {
dom: 'Clfiprt',
language: {
search : 'Filter Jobs:'
},
colVis: {
buttonText: 'Change Columns',
align: 'right',
overlayFade: 0,
showAll: 'Show All Columns',
restore: 'Reset Columns'
},
lengthMenu: [[25, 50, 100, -1], [25, 50, 100,'All']],
orderClasses: false,
deferRender: true,
autoWidth: false,
ordering: true,
order: [[ 2, 'desc' ]],
columns: [
{ title: 'Job Name', data: 'jobParameters.jobName' },
{ title: 'status', data: 'status'},
{ title: 'Start Date', data: 'startDate'},
{ title: 'End Date', data: 'endDate'}
]
}
}">
</table>
</div>
</div>
<div data-bind="if: currentView() == 'reports'">
<div class="wrapperTitle">
<span data-bind="if:!pageModel.loadingReport()"><i class="fa fa-area-chart"></i></span>
<span data-bind="if:pageModel.loadingReport()"><i class="fa fa-refresh fa-spin"></i></span> Cohort Reporting
</div>
<div class="reportControls pad-5">
<select class="form-control" data-bind="css : { invalid: reportCohortDefinitionId()==undefined }, options:pageModel.cohortDefinitions, optionsText:'name', optionsValue:'id', optionsCaption:'Select a Cohort Definition', value:reportCohortDefinitionId"></select>
<select class="form-control" data-bind="css : { invalid: reportReportName()==undefined }, options:pageModel.reports(), optionsCaption:'Select a Report', value:reportReportName"></select>
<select class="form-control" data-bind="css : { invalid: reportSourceKey()==undefined }, options:pageModel.services()[0].sources.filter(hasResults), optionsValue:'sourceKey', optionsText:'sourceName', value:reportSourceKey, optionsCaption:'Select a Source'"></select>
<input type="button" class="btn btn-default" onclick="runReport();" data-bind="enable: pageModel.reportValid(), value: pageModel.loadingReport() ? 'Loading...' : 'Run Report'">
</div>
<div id="reportPerson" data-bind="if: currentReport() == 'Person' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Person Report</div>
<div class="reportSectionHeading">Year of Birth</div>
<div class="evidenceDescription">The number of people in this cohort shown with respect to their year of birth.</div>
<div class="evidenceVisualization" id="hist"></div>
<div class="reportSectionHeading">Gender</div>
<div class="evidenceDescription">The number of people in this cohort stratified by gender.</div>
<div class="evidenceVisualization" id="gender"></div>
<div class="reportSectionHeading">Race</div>
<div class="evidenceDescription">The number of people in this cohort stratified by race.</div>
<div class="evidenceVisualization" id="race"></div>
<div class="reportSectionHeading">Ethnicity</div>
<div class="evidenceDescription">The number of people in this cohort stratified by ethnicity.</div>
<div class="evidenceVisualization" id="ethnicity"></div>
</div>
</div>
<div id="reportCohortSpecific" data-bind="if: currentReport() == 'Cohort Specific' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Cohort Specific Report</div>
<div class="reportSectionHeading">Prevalence by Month</div>
<div class="evidenceVisualization" id="prevalenceByMonth"></div>
<div class="evidenceDescription">help text here</div>
<div class="reportSectionHeading">Cohort Start</div>
<div class="evidenceVisualization" id="trellisLinePlot"></div>
<div class="evidenceDescription">help text here</div>
<div class="reportSectionHeading">Persons in Cohort from Start to End</div>
<div class="evidenceDescription" style="width:30%;">help text here</div>
<div class="evidenceVisualization" id="personinCohortFromStartToEnd"></div>
<div class="reportSectionHeading">Number of Persons by Duration from Cohort Start to Cohort End</div>
<div class="evidenceDescription" style="width:30%;">help text here</div>
<div class="evidenceVisualization" id="personsByDurationFromStartToEnd"></div>
<div class="reportSectionHeading">Distribution of Age at Cohort Start by Cohort Start Year</div>
<div class="evidenceDescription" style="width:30%;">help text here</div>
<div class="evidenceVisualization" id="distributionAgeCohortStartByCohortStartYear"></div>
<div class="reportSectionHeading">Age at Index</div>
<div class="evidenceDescription" style="width:30%;">help text here</div>
<div class="evidenceVisualization" id="ageAtIndex"></div>
<div class="reportSectionHeading">Distribution of Age at Cohort Start by Gender</div>
<div class="evidenceDescription" style="width:30%;">help text here</div>
<div class="evidenceVisualization" id="distributionAgeCohortStartByGender"></div>
</div>
</div>
<div id="reportConditionsByIndex" data-bind="if: currentReport() == 'Conditions by Index' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Conditions by Index Report</div>
<div class="reportSectionHeading">Condition Prevalence</div>
<ul class="nav nav-tabs" id="myTab" role="tablist">
<li class="active" id="treemap-tab"><a href="#condition-treemap-panel" role="tab" data-toggle="tab">Treemap</a>
</li>
<li><a href="#condition-table-panel" role="tab" data-toggle="tab">Table</a>
</li>
</ul>
<div id='content' class="tab-content">
<div role="tabpanel" class="tab-pane active" id="condition-treemap-panel">
<div id="treemap_container">
<div class="treemap_zoomtarget"></div>
</div>
<div class="treemap_legend">Box Size: Prevalence, Color: Log of Relative Risk (Red to Green = Negative to Positive), Use Ctrl-Click to Zoom, Alt-Click to Reset Zoom</div>
</div>
<div role="tabpanel" class="tab-pane" id="condition-table-panel">
<table id="condition_table" class="display treemap_table" type="condition">
<thead>
<tr>
<th>Concept Id</th>
<th>SOC</th>
<th>HLGT</th>
<th>HLT</th>
<th>PT</th>
<th>SNOMED</th>
<th>Person Count</th>
<th>Prevalence</th>
<th>Relative Risk per Person</th>
</tr>
</thead>
</table>
</div>
</div>
<div class="loader" data-bind="if:pageModel.loadingReportDrilldown">
<i class="fa fa-refresh fa-spin"></i> Loading Drilldown...
</div>
<div data-bind="if:pageModel.activeReportDrilldown">
<div id="conditionDrilldownScatterplotHeading" class="reportSectionHeading">
</div>
<div class="evidenceVisualization" id="conditionDrilldownScatterplot"></div>
</div>
</div>
</div>
<div id="reportDrugErasByIndex" data-bind="if: currentReport() == 'Drugs by Index' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Drugs by Index Report</div>
<div class="reportSectionHeading">Drug Era Prevalence</div>
<ul class="nav nav-tabs" id="myTab" role="tablist">
<li class="active" id="treemap-tab"><a href="#drugera-treemap-panel" role="tab" data-toggle="tab">Treemap</a>
</li>
<li><a href="#drugera-table-panel" role="tab" data-toggle="tab">Table</a>
</li>
</ul>
<div id='content' class="tab-content">
<div role="tabpanel" class="tab-pane active" id="drugera-treemap-panel">
<div id="treemap_container">
<div class="treemap_zoomtarget"></div>
</div>
<div class="treemap_legend">Box Size: Prevalence, Color: Log of Relative Risk (Red to Green = Negative to Positive), Use Ctrl-Click to Zoom, Alt-Click to Reset Zoom</div>
</div>
<div role="tabpanel" class="tab-pane" id="drugera-table-panel">
<table id="drugera_table" class="display treemap_table" type="drug">
<thead>
<tr>
<th>Concept Id</th>
<th>ATC 1</th>
<th>ATC 3</th>
<th>ATC 5</th>
<th>Ingredient</th>
<th>Person Count</th>
<th>Prevalence</th>
<th>Relative Risk per Person</th>
</tr>
</thead>
</table>
</div>
</div>
<div class="loader" data-bind="if:pageModel.loadingReportDrilldown">
<i class="fa fa-refresh fa-spin"></i> Loading Drilldown...
</div>
<div data-bind="if:pageModel.activeReportDrilldown">
<div id="drugDrilldownScatterplotHeading" class="reportSectionHeading">
</div>
<div class="evidenceVisualization" id="drugDrilldownScatterplot"></div>
</div>
</div>
</div>
<div id="reportConditionPeriods" data-bind="if: currentReport() == 'Observation Periods' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i>Observation Period Report</div>
<div class="reportSectionHeading">Age at First Observation</div>
<div class="evidenceDescription">The distribution of age at first observation in the cohort.</div>
<div class="evidenceVisualization" id="ageatfirstobservation"></div>
<div class="reportSectionHeading">Age by Gender</div>
<div class="evidenceDescription">The distribution of age at first observation in the cohort stratified by gender.</div>
<div class="evidenceVisualization" id="agebygender"></div>
<div class="reportSectionHeading">Observation Length</div>
<div class="evidenceDescription">Distribution of total observation time in cohort</div>
<div class="evidenceVisualization" id="observationlength"></div>
<div class="reportSectionHeading">Observation Length by Gender</div>
<div class="evidenceDescription">Distribution of total observation time in cohort by gender</div>
<div class="evidenceVisualization" id="opbygender"></div>
<div class="reportSectionHeading">Cumulative Observation</div>
<div class="evidenceDescription">Observation time in cohort by % of people in the cohort.</div>
<div class="evidenceVisualization" id="cumulativeobservation"></div>
<div class="reportSectionHeading">Observation Length by Age Decile</div>
<div class="evidenceDescription">Observation time in cohort by age decile.</div>
<div class="evidenceVisualization" id="opbyage"></div>
<div class="reportSectionHeading">Perons with Continuous Observation by Year</div>
<div class="evidenceDescription">Perons with Continuous Observation by Year.</div>
<div class="evidenceVisualization" id="oppeoplebyyear"></div>
<div class="reportSectionHeading">Observation Periods per Person</div>
<div class="evidenceDescription">The count of observation periods per person</div>
<div class="evidenceVisualization" id="opperperson"></div>
<div class="reportSectionHeading">Persons With Continuous Observation By Month</div>
<div class="evidenceDescription">Persons With Continuous Observation By Month</div>
<div class="evidenceVisualization" id="oppeoplebymonthsingle"></div>
</div>
</div>
<div id="reportConditionEras" data-bind="if: currentReport() == 'Condition Eras' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Condition Eras Report</div>
<div class="reportSectionHeading">Condition Era Prevalence</div>
<ul class="nav nav-tabs" id="myTab" role="tablist">
<li class="active"><a href="#conditionera-treemap-panel" role="tab" data-toggle="tab">Treemap</a>
</li>
<li><a href="#conditionera-table-panel" role="tab" data-toggle="tab">Table</a>
</li>
</ul>
<div id='content' class="tab-content">
<div role="tabpanel" class="tab-pane active" id="conditionera-treemap-panel">
<div id="treemap_container">
<div class="treemap_zoomtarget"></div>
</div>
<div class="treemap_legend">Box Size: Prevalence, Color: Length of Era (Light to Dark = Low to High), Use Ctrl-Click to Zoom, Alt-Click to Reset Zoom</div>
</div>
<div role="tabpanel" class="tab-pane" id="conditionera-table-panel">
<table id="conditionera_table" class="display">
<thead>
<tr>
<th>Concept Id</th>
<th>SOC</th>
<th>HLGT</th>
<th>HLT</th>
<th>PT</th>
<th>SNOMED</th>
<th>Person Count</th>
<th>Prevalence</th>
<th>Length of Era</th>
</tr>
</thead>
</table>
</div>
</div>
<div class="loader" data-bind="if:pageModel.loadingReportDrilldown">
<i class="fa fa-refresh fa-spin"></i> Loading Drilldown...
</div>
<div data-bind="if:pageModel.activeReportDrilldown">
<div class="heading" id="conditionEraDrilldown"></div>
<div class="reportSectionHeading">Condition Era Prevalence</div>
<div class="evidenceVisualization" id="trellisLinePlot"></div>
<div class="evidenceDescription">help text here</div>
<div class="reportSectionHeading">Condition Era Prevalence by Month</div>
<div class="evidenceVisualization" id="conditioneraPrevalenceByMonth"></div>
<div class="evidenceDescription">help text here</div>
<div class="reportSectionHeading">Age at First Diagnosis</div>
<div class="evidenceDescription">help text here</div>
<div class="evidenceVisualization" id="conditioneras_age_at_first_diagnosis"></div>
<div class="reportSectionHeading">Length of Condition Era</div>
<div class="evidenceDescription" style="width:30%;">help text here</div>
<div class="evidenceVisualization" id="conditioneras_length_of_era"></div>
</div>
</div>
</div>
<div id="reportProceduresByIndex" data-bind="if: currentReport() == 'Procedures by Index' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Procedures by Index Report</div>
<div class="reportSectionHeading">Procedure Prevalence</div>
<ul class="nav nav-tabs" id="myTab" role="tablist">
<li class="active" id="treemap-tab"><a href="#procedure-treemap-panel" role="tab" data-toggle="tab">Treemap</a>
</li>
<li><a href="#procedure-table-panel" role="tab" data-toggle="tab">Table</a>
</li>
</ul>
<div id='content' class="tab-content">
<div role="tabpanel" class="tab-pane active" id="procedure-treemap-panel">
<div id="treemap_container">
<div class="treemap_zoomtarget"></div>
</div>
<div class="treemap_legend">Box Size: Prevalence, Color: Log of Relative Risk (Red to Green = Negative to Positive), Use Ctrl-Click to Zoom, Alt-Click to Reset Zoom</div>
</div>
<div role="tabpanel" class="tab-pane" id="procedure-table-panel">
<table id="procedure_table" class="display treemap_table" type="procedure">
<thead>
<tr>
<th>Concept Id</th>
<th>Level 4</th>
<th>Level 3</th>
<th>Level 2</th>
<th>Procedure</th>
<th>Person Count</th>
<th>Prevalence</th>
<th>Relative Risk per Person</th>
</tr>
</thead>
</table>
</div>
</div>
<div class="loader" data-bind="if:pageModel.loadingReportDrilldown">
<i class="fa fa-refresh fa-spin"></i> Loading Drilldown...
</div>
<div data-bind="if:pageModel.activeReportDrilldown">
<div id="procedureDrilldownScatterplotHeading" class="reportSectionHeading">
</div>
<div class="evidenceVisualization" id="procedureDrilldownScatterplot"></div>
</div>
</div>
</div>
<div id="reportCondition" data-bind="if: currentReport() == 'Condition' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Condition Report</div>
<div class="reportSectionHeading">Condition Prevalence</div>
<ul class="nav nav-tabs" id="myTab" role="tablist">
<li class="active" id="treemap-tab"><a href="#condition-treemap-panel" role="tab" data-toggle="tab">Treemap</a>
</li>
<li><a href="#condition-table-panel" role="tab" data-toggle="tab">Table</a>
</li>
</ul>
<div id='content' class="tab-content">
<div role="tabpanel" class="tab-pane active" id="condition-treemap-panel">
<div id="treemap_container">
<div class="treemap_zoomtarget"></div>
</div>
<div class="treemap_legend">Box Size: Prevalence, Color: Records per Person (Light to Dark = Low to High), Use Ctrl-Click to Zoom, Alt-Click to Reset Zoom</div>
</div>
<div role="tabpanel" class="tab-pane" id="condition-table-panel">
<table id="condition_table" class="display">
<thead>
<tr>
<th>Concept Id</th>
<th>SOC</th>
<th>HLGT</th>
<th>HLT</th>
<th>PT</th>
<th>SNOMED</th>
<th>Person Count</th>
<th>Prevalence</th>
<th>Records per Person</th>
</tr>
</thead>
</table>
</div>
</div>
<div class="loader" data-bind="if:pageModel.loadingReportDrilldown">
<i class="fa fa-refresh fa-spin"></i> Loading Drilldown...
</div>
<div data-bind="if:pageModel.activeReportDrilldown">
<div class="heading" id="conditionDrilldown"></div>
<div class="reportSectionHeading">Condition Prevalence</div>
<div class="evidenceVisualization" id="trellisLinePlot"></div>
<div class="evidenceDescription">Condition Prevalence</div>
<div class="reportSectionHeading">Condition Prevalence by Month</div>
<div class="evidenceVisualization" id="conditionPrevalenceByMonth"></div>
<div class="evidenceDescription">Condition Prevalence by Month</div>
<div class="reportSectionHeading">Condition Type</div>
<div class="evidenceDescription">Condition Type</div>
<div class="evidenceVisualization" id="conditionsByType"></div>
<div class="reportSectionHeading">Age at First Diagnosis</div>
<div class="evidenceVisualization" id="ageAtFirstDiagnosis"></div>
<div class="evidenceDescription">Age at First Diagnosis</div>
</div>
</div>
</div>
<div id="reportDrugEras" data-bind="if: currentReport() == 'Drug Eras' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Drug Eras Report</div>
<div class="reportSectionHeading">Drug Era Prevalence</div>
<ul class="nav nav-tabs" id="myTab" role="tablist">
<li class="active"><a href="#drugera-treemap-panel" role="tab" data-toggle="tab">Treemap</a>
</li>
<li><a href="#drugera-table-panel" role="tab" data-toggle="tab">Table</a>
</li>
</ul>
<div id='content' class="tab-content">
<div role="tabpanel" class="tab-pane active" id="drugera-treemap-panel">
<div id="treemap_container">
<div class="treemap_zoomtarget"></div>
</div>
<div class="treemap_legend">Box Size: Prevalence, Color: Length of Era (Light to Dark = Low to High), Use Ctrl-Click to Zoom, Alt-Click to Reset Zoom</div>
</div>
<div role="tabpanel" class="tab-pane" id="drugera-table-panel">
<table id="drugera_table" class="display">
<thead>
<tr>
<th>Concept Id</th>
<th>ATC 1</th>
<th>ATC 3</th>
<th>ATC 5</th>
<th>Ingredient</th>
<th>Person Count</th>
<th>Prevalence</th>
<th>Length of Era</th>
</tr>
</thead>
</table>
</div>
</div>
<div class="loader" data-bind="if:pageModel.loadingReportDrilldown">
<i class="fa fa-refresh fa-spin"></i> Loading Drilldown...
</div>
<div data-bind="if:pageModel.activeReportDrilldown">
<div class="heading" id="drugeraDrilldown"></div>
<div class="reportSectionHeading">Drug Era Prevalence</div>
<div class="evidenceVisualization" id="trellisLinePlot"></div>
<div class="evidenceDescription">Drug Era Prevalence</div>
<div class="reportSectionHeading">Drug Era Prevalence by Month</div>
<div class="evidenceVisualization" id="drugeraPrevalenceByMonth"></div>
<div class="evidenceDescription">Monthly drug era prevalence</div>
<div class="reportSectionHeading">Age at First Exposure by Gender</div>
<div class="evidenceVisualization" id="drugeras_age_at_first_exposure"></div>
<div class="evidenceDescription">Age at First Exposure by Gender</div>
<div class="reportSectionHeading">Length of Era Distribution</div>
<div class="evidenceVisualization" id="drugeras_length_of_era"></div>
<div class="evidenceDescription">Length of Era Distribution</div>
</div>
</div>
</div>
<div id="reportDrugExposure" data-bind="if: currentReport() == 'Drug Exposure' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Drug Exposure Report</div>
<div class="reportSectionHeading">Drug Exposure Prevalence</div>
<ul class="nav nav-tabs" id="myTab" role="tablist">
<li class="active" id="treemap-tab"><a href="#drug_treemap_panel" role="tab" data-toggle="tab">Treemap</a>
</li>
<li><a href="#drug_table_panel" role="tab" data-toggle="tab">Table</a>
</li>
</ul>
<div id='content' class="tab-content">
<div class="tab-pane active" id="drug_treemap_panel">
<div id="treemap_container">
<div class="treemap_zoomtarget"></div>
</div>
<div class="treemap_legend">Box Size: Prevalence, Color: Records per Person (Light to Dark = Low to High), Use Ctrl-Click to Zoom, Alt-Click to Reset Zoom</div>
</div>
<div class="tab-pane" id="drug_table_panel">
<table id="drug_table" class="display">
<thead>
<tr>
<th>Concept Id</th>
<th>ATC 1</th>
<th>ATC 3</th>
<th>ATC 5</th>
<th>Ingredient</th>
<th>RxNorm</th>
<th>Person Count</th>
<th>Prevalence</th>
<th>Records per Person</th>
</tr>
</thead>
</table>
</div>
</div>
<div class="loader" data-bind="if:pageModel.loadingReportDrilldown">
<i class="fa fa-refresh fa-spin"></i> Loading Drilldown...
</div>
<div data-bind="if:pageModel.activeReportDrilldown">
<div class="heading" id="drugExposureDrilldown"></div>
<div class="reportSectionHeading">Drug Exposure Prevalence</div>
<div class="evidenceVisualization" id="trellisLinePlot"></div>
<div class="evidenceDescription">Drug Exposure Prevalence</div>
<div class="reportSectionHeading">Drug Exposure Prevalence by Month</div>
<div class="evidenceVisualization" id="drugPrevalenceByMonth"></div>
<div class="evidenceDescription">Drug Exposure Prevalence by Month</div>
<div class="reportSectionHeading">Age at First Exposure</div>
<div class="evidenceDescription">Age at First Exposure</div>
<div class="evidenceVisualization" id="ageAtFirstExposure"></div>
<div class="reportSectionHeading">Days Supply Distribution</div>
<div class="evidenceDescription">Days Supply Distribution</div>
<div class="evidenceVisualization" id="daysSupplyDistribution"></div>
<div class="reportSectionHeading">Quantity Distribution</div>
<div class="evidenceDescription">Quantity Distribution</div>
<div class="evidenceVisualization" id="quantityDistribution"></div>
<div class="reportSectionHeading">Refills Distribution</div>
<div class="evidenceDescription">Refills Distribution</div>
<div class="evidenceVisualization" id="refillsDistribution"></div>
<div class="reportSectionHeading">Drugs by Type</div>
<div class="evidenceDescription">Drugs by Type</div>
<div class="evidenceVisualization" id="drugsByType"></div>
</div>
</div>
</div>
<div id="reportProcedure" data-bind="if: currentReport() == 'Procedure' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Procedure Report</div>
<div class="reportSectionHeading">Procedure Prevalence</div>
<ul class="nav nav-tabs" id="myTab" role="tablist">
<li class="active"><a href="#procedure-treemap-panel" role="tab" data-toggle="tab">Treemap</a>
</li>
<li><a href="#procedure-table-panel" role="tab" data-toggle="tab">Table</a>
</li>
</ul>
<div id='content' class="tab-content">
<div class="tab-pane active" role="tabpanel" id="procedure-treemap-panel">
<div id="treemap_container">
<div class="treemap_zoomtarget"></div>
</div>
<div class="treemap_legend">Box Size: Prevalence, Color: Records per Person (Light to Dark = Low to High), Use Ctrl-Click to Zoom, Alt-Click to Reset Zoom</div>
</div>
<div class="tab-pane" role="tabpanel" id="procedure-table-panel">
<table id="procedure_table" class="display">
<thead>
<tr>
<th>Concept Id</th>
<th>Level 4</th>
<th>Level 3</th>
<th>Level 2</th>
<th>Procedure</th>
<th>Person Count</th>
<th>Prevalence</th>
<th>Records per Person</th>
</tr>
</thead>
</table>
</div>
</div>
<div class="loader" data-bind="if:pageModel.loadingReportDrilldown">
<i class="fa fa-refresh fa-spin"></i> Loading Drilldown...
</div>
<div data-bind="if:pageModel.activeReportDrilldown">
<div class="heading" id="procedureDrilldown"></div>
<div class="reportSectionHeading">Procedure Prevalence</div>
<div class="evidenceVisualization" id="trellisLinePlot"></div>
<div class="evidenceDescription">Procedure Prevalence</div>
<div class="reportSectionHeading">Procedure Prevalence by Month</div>
<div class="evidenceVisualization" id="procedurePrevalenceByMonth"></div>
<div class="evidenceDescription">Procedure Prevalence by Month</div>
<div class="reportSectionHeading">Procedures by Type</div>
<div class="evidenceDescription">Procedures by Type</div>
<div class="evidenceVisualization" id="proceduresByType"></div>
<div class="reportSectionHeading">Age at First Occurrence</div>
<div style="width:30%" class="evidenceDescription">Age at First Occurrence</div>
<div class="evidenceVisualization" id="ageAtFirstOccurrence"></div>
</div>
</div>
</div>
<div id="reportDeath" data-bind="if: currentReport() == 'Death' && !loadingReport()">
<div class="pad-10 report">
<div class="reportHeading"><i class="fa fa-area-chart"></i> Death Report</div>
<div class="reportSectionHeading">Death Prevalence by Age, Gender, Year</div>
<div class="evidenceVisualization" id="trellisLinePlot"></div>
<div class="reportSectionHeading">Death Prevalence by Month</div>
<div class="evidenceVisualization" id="deathPrevalenceByMonth"></div>
<div class="reportSectionHeading">Death by Type</div>
<div class="evidenceDescription">Death by Type</div>
<div class="evidenceVisualization" id="deathByType"></div>
<div class="reportSectionHeading">Age at Death</div>
<div style="width:30%" class="evidenceDescription">Age at Death</div>
<div class="evidenceVisualization" id="ageAtDeath"></div>
</div>
</div>
</div>
<!-- reports container -->
<div data-bind="if: currentView() == 'cohortdefinition'">
<div class="wrapperTitle" data-bind="text:currentCohortDefinition().name">
</div>
<div id="wrapperCohortDefinition">
<div class="heading">Cohort Definition</div>
<div class="cohortDescription" data-bind="text:currentCohortDefinition().description"></div>
<div class="heading">Cohort Generation Status</div>
<table class="configureSourceTable">
<thead>
<th>Source Name</th>
<th class="centered">Generated</th>
<th>Generation Status</th>
<th>Distinct People</th>
<th>Generated</th>
<th>Generation Duration</th>
</thead>
<tbody data-bind="foreach:cohortDefinitionSourceInfo">
<tr>
<td data-bind="text:name"></td>
<td class="statusIndicator">
<div class="fa" data-bind="css: { 'fa-check-circle' : isValid, 'fa-exclamation-circle' : !isValid }"></div>
</td>
<td class="rightaligned">
<div data-bind="text: status"></div>
</td>
<td class="rightaligned">
<div><span data-bind="html: distinctPeople"></span>
</div>
</td>
<td class="rightaligned">
<div data-bind="text: startTime"></div>
</td>
<td class="rightaligned">
<div data-bind="text: executionDuration"></div>
</td>
</tr>
</tbody>
</table>
<div class="heading">Cohort Analysis Status</div>
<table id="analysisStatus">
<thead>
<th>Analysis Type</th>
<!-- ko foreach: pageModel.services()[0].sources.filter(hasCDM) -->
<th data-bind="text:sourceName"></th>
<!-- /ko -->
</thead>
<tbody>
<!-- ko foreach:cohortAnalyses -->
<tr>
<td data-bind="text:name"></td>
<!-- ko foreach: pageModel.services()[0].sources.filter(hasCDM) -->
<td class="statusIndicator">
<!-- ko if:pageModel.sourceAnalysesStatus[sourceKey]().ready -->
<i class="fa" data-bind="css: { 'fa-check-circle' : pageModel.sourceAnalysesStatus[sourceKey]()[$parent.name] > 0, 'fa-exclamation-triangle' : pageModel.sourceAnalysesStatus[sourceKey]()[$parent.name] == 0 }"></i>
<input data-bind="attr: { name : sourceKey, value : $parent.name }" type="checkbox">
<!-- /ko -->
<!-- ko if:pageModel.sourceAnalysesStatus[sourceKey]().checking -->
<i class="fa fa-refresh fa-spin"></i>
<!-- /ko -->
<!-- ko if:!pageModel.sourceAnalysesStatus[sourceKey]().checking && !pageModel.sourceAnalysesStatus[sourceKey]().ready -->
<i class="fa fa-exclamation-circle"></i>
<!-- /ko -->
</td>
<!-- /ko -->
</tr>
<!-- /ko -->
<tr>
<td style="border-bottom:0px;"></td>
<!-- ko foreach: pageModel.services()[0].sources.filter(hasCDM) -->
<td style="border-bottom:0px;padding:5px;" class="statusIndicator">
<!-- ko if:pageModel.sourceAnalysesStatus[sourceKey]().ready -->
<input data-bind="click:generateAnalyses" type="button" value="Generate">
<!-- /ko -->
</td>
<!-- /ko -->
</tr>
</tbody>
</table>
</div>
</div>
<div data-bind="if: currentView() == 'cohortdefinitions'">
<div class="wrapperTitle">
<i class="fa fa-language"></i> Cohort Definitions
</div>
<div id="wrapperCohort">
<table width="100%" class="conceptTable stripe compact hover" cellspacing="0" data-bind="dataTable:{
data: pageModel.cohortDefinitions(),
options: {
dom: 'Clfiprt',
language: {
search : 'Filter Cohort Definitions:'
},
colVis: {
buttonText: 'Change Columns',
align: 'right',
overlayFade: 0,
showAll: 'Show All Columns',
restore: 'Reset Columns'
},
lengthMenu: [[25, 50, 100, -1], [25, 50, 100,'All']],
orderClasses: false,
deferRender: true,
autoWidth: false,
ordering: true,
order: [[ 2, 'asc' ]],
columns: [
{ title: 'Id', data: 'id' },
{ title: 'Name', render: renderCohortDefinitionLink },
{ title: 'Description', data: 'description'},
{ title: 'Expression Type', data: 'expressionType', visible: false },
{ title: 'Created', data: 'createdDate'},
{ title: 'Last Modified', data: 'modifiedDate', visible: false}
]
}
}">
</table>
</div>
</div>
<div data-bind="if: currentView() == 'configure'">
<div class="wrapperTitle">
Configure
</div>
<div id="wrapperConfigure">
<div data-bind="if:appInitializationFailed">
<div class="heading"><i class="fa fa-exclamation-circle"></i> Application Initialization Errors Encountered: Please notify your administrator about this message.</div>
<div data-bind="foreach:initializationErrors">
<div class="error" data-bind="text:$data"></div>
</div>
</div>
<div class="heading">Configured Services</div>
<div data-bind="foreach:pageModel.services">
<div data-bind="if:available==true">
<div class="serviceStatus serviceAvailable fa fa-check-circle"></div>
</div>
<div data-bind="if:available==false">
<div class="serviceStatus serviceUnavailable fa fa-exclamation-circle"></div>
</div>
<span class="serviceName" data-bind="text:name"></span> (
<span class="serviceUrl" data-bind="text:url"></span>)
<div data-bind="if:available==false">
<div class="error" data-bind="text:thrownError"></div>
<div class="error" data-bind="text:xhr.statusText"></div>
</div>
<div data-bind="foreach:initializationErrors">
<div class="error" data-bind="text:$data"></div>
</div>
<table data-bind="if:$data.sources.length > 0" class="configureSourceTable">
<thead>
<th></th>
<th>Source Name</th>
<th>Vocabulary Version</th>
<th>Dialect</th>
<th class="centered">Vocabulary</th>
<th class="centered">Evidence</th>
<th class="centered">Density</th>
<th class="centered">Incidence</th>
</thead>
<tbody data-bind="foreach:$data.sources">
<tr>
<td><i class="fa" data-bind="if:!initialized, attr: { title : error }, css: { 'fa-check-circle': initialized, 'fa-exclamation-circle': !initialized }"></i>
<span data-bind="text:error"></span>
</td>
<td data-bind="text:sourceName"></td>
<td data-bind="text:version"></td>
<td data-bind="text:sourceDialect"></td>
<td class="configureRadio">
<input type="radio" name="radioSource" data-bind="disable:!hasVocabulary, checkedValue:vocabularyUrl, checked:pageModel.vocabularyUrl">
</td>
<td class="configureRadio">
<input type="radio" name="radioEvidence" data-bind="disable:!hasEvidence, checkedValue:evidenceUrl, checked:pageModel.evidenceUrl">
</td>
<td class="configureRadio">
<input type="radio" name="radioDensity" data-bind="disable:!hasResults, checkedValue:resultsUrl, checked:pageModel.resultsUrl">
</td>
<td class="configureCheckbox">
<input type="checkbox" name="checkResults" data-bind="disable:!hasResults, checked:hasResults">
</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
<div data-bind="if: currentView() == 'import'">
<div class="wrapperTitle">
Import
</div>
<ul class="nav nav-tabs">
<li role="presentation" data-bind="click: function() {pageModel.currentImportMode('identifiers');}, attr: {class: currentImportMode() == 'identifiers' ? 'active' : ''}"><a>Concept Identifiers</a>
</li>
<li role="presentation" data-bind="click: function() {pageModel.currentImportMode('conceptset');}, attr: {class: currentImportMode() == 'conceptset' ? 'active' : ''}"><a>Concept Set</a>
</li>
</ul>
<div id="wrapperImport">
<div id="wrapperImportConceptIdentifiers" class="paddedWrapper form-group" data-bind="if:pageModel.currentImportMode() == 'identifiers'">
<div class="heading">Concept Identifiers</div>
<textarea class="form-control" rows="5" id="textImportConceptIdentifiers" data-bind="if:pageModel.currentImportMode() == 'conceptset'"></textarea>
<button type="button" onclick="importConceptIdentifiers()" class="btn btn-sm btn-primary">Import Concept Identifiers</button>
<div class="heading">Imported Concepts</div>
<table width="100%" class="conceptTable stripe compact hover" cellspacing="0" data-bind="dataTable:{
data: pageModel.importedConcepts(),
options: {
dom: 'Clfiprt',
colVis: {
buttonText: 'Change Columns',
align: 'right',
overlayFade: 0,
showAll: 'Show All Columns',
restore: 'Reset Columns'
},
rowCallback: contextSensitiveLinkColor,
lengthMenu: [[25, 50, 100, -1], [25, 50, 100,'All']],
orderClasses: false,
deferRender: true,
autoWidth: false,
ordering: true,
order: [[ 2, 'asc' ]],
columns: [
{ title: '', render: renderConceptSelector, orderable:false, searchable:false},
{ title: 'Concept Id', data: 'CONCEPT_ID', visible: false},
{ title: 'Concept Code', data: 'CONCEPT_CODE', visible: false},
{ title: 'Concept Name', data: 'CONCEPT_NAME', render: renderLink},
{ title: 'Class', data: 'CONCEPT_CLASS_ID' },
{ title: 'Standard Concept Caption', data: 'STANDARD_CONCEPT_CAPTION', visible: false},
{ title: 'Standard Concept Code', data: 'STANDARD_CONCEPT', visible: false},
{ title: 'Domain', data: 'DOMAIN_ID' },
{ title: 'Vocabulary', data: 'VOCABULARY_ID' }
]
}
}">
</table>
<div class="linkLegend">
<div class="linkLegendItem">
<div class="swatch standard">
</div>
<div class="linkLegendTitle">Standard</div>
</div>
<div class="linkLegendItem">
<div class="swatch nonStandard">
</div>
<div class="linkLegendTitle">Non-Standard</div>
</div>
<div class="linkLegendItem">
<div class="swatch classification">
</div>
<div class="linkLegendTitle">Classification</div>
</div>
</div>