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Add terminology from software ontology SWO #1502

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stap-m opened this issue Mar 8, 2023 · 3 comments
Open
5 tasks

Add terminology from software ontology SWO #1502

stap-m opened this issue Mar 8, 2023 · 3 comments
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[A] new term Including new term(s) in the ontology external ontology external ontologies that could be included stale already discussed issues that haven't got worked on for a while

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@stap-m
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stap-m commented Mar 8, 2023

Description of the issue

SWO contains some terms that might be interesting for oeo-model, especially subclasses of information content entity and some processes.
grafik
grafik

Ideas of solution

Workflow checklist

  • I discussed the issue with someone else than me before working on a solution
  • I already read the latest version of the workflow for this repository
  • The goal of this ontology is clear to me

I am aware that

  • every entry in the ontology should have a definition
  • classes should arise from concepts rather than from words
@stap-m stap-m added [A] new term Including new term(s) in the ontology To do Issues that haven't got discussed yet labels Mar 8, 2023
@stap-m stap-m added the external ontology external ontologies that could be included label Mar 8, 2023
@christian-rli
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SWO uses BFO and is licensed under CC-BY-4.0 (note from the developer meeting)

@l-emele
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l-emele commented Mar 25, 2023

Which basically means that if we import from SWO we have to add to every imported class an annotation property. But I think that this is doable.

However, we have to check overlaps of already existing OEO classes.

@stap-m stap-m added this to the oeo-release-1.15.0 milestone Mar 28, 2023
@l-emele
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l-emele commented May 25, 2023

I had a bit a look into this ontology. I would suggest that we import only selected classes, as a) some are parallel to already in the OEO existing classes and b) some are completely irrelevant for our domain, e.g. gene expression analysis.

As SWO builds upon IAO we should also check first, whether there are more useful concepts in IAO.

@github-actions github-actions bot removed the To do Issues that haven't got discussed yet label May 25, 2023
@stale stale bot added the stale already discussed issues that haven't got worked on for a while label Jun 10, 2023
@stale stale bot removed the stale already discussed issues that haven't got worked on for a while label Aug 1, 2023
@stale stale bot added the stale already discussed issues that haven't got worked on for a while label Sep 16, 2023
@stale stale bot removed the stale already discussed issues that haven't got worked on for a while label Oct 9, 2023
@stale stale bot added the stale already discussed issues that haven't got worked on for a while label Feb 1, 2025
@stap-m stap-m added this to Issues Feb 1, 2025
@github-project-automation github-project-automation bot moved this to To do in Issues Feb 1, 2025
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Labels
[A] new term Including new term(s) in the ontology external ontology external ontologies that could be included stale already discussed issues that haven't got worked on for a while
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