tests.yml

# run test suites

name: Tests
on:
  - pull_request
  - push

jobs:
  # see: https://github.com/fkirc/skip-duplicate-actions
  skip_duplicate:
    continue-on-error: true
    runs-on: ubuntu-latest
    outputs:
      should_skip: ${{ steps.skip_check.outputs.should_skip }}
    steps:
      - id: skip_check
        uses: fkirc/skip-duplicate-actions@master
        with:
          concurrent_skipping: "same_content"
          skip_after_successful_duplicate: "true"
          do_not_skip: '["pull_request", "workflow_dispatch", "schedule"]'

  # see: https://github.com/actions/setup-python
  tests:
    needs: skip_duplicate
    if: ${{ needs.skip_duplicate.outputs.should_skip != 'true' }}
    runs-on: ${{ matrix.os }}
    continue-on-error: ${{ matrix.allow-failure }}
    env:
      # override make command to install directly in active python
      CONDA_COMMAND: ""
    services:
      # Label used to access the service container
      postgres:
        image: postgres  # DockerHub
        env:
          POSTGRES_USER: postgres
          POSTGRES_PASSWORD: qwerty
        ports:
          - "5432:5432"
        # Set health checks to wait until postgres has started
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5
    strategy:
      matrix:
        # os: [ubuntu-latest, windows-latest]
        os: [ubuntu-latest]
        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
        allow-failure: [false]
        test-case: [test-local]
        # can use below option to set environment variables or makefile settings applied during test execution
        test-option: [""]
        include:
          # linter tests
          - os: ubuntu-latest
            # FIXME:
            #   Not using 3.11 because of problems with pylint false-positives about missing builtin references.
            #   https://github.com/PyCQA/pylint/issues/6535
            python-version: "3.10"
            allow-failure: false
            test-case: check
          # remote test
          - os: ubuntu-latest
            python-version: "3.11"
            allow-failure: true
            test-case: start test-remote
          # coverage test
          - os: ubuntu-latest
            python-version: "3.11"
            allow-failure: false
            test-case: coverage
          # smoke test of Docker image
          - os: ubuntu-latest
            python-version: none
            allow-failure: true
            test-case: test-docker
    steps:
      - uses: actions/checkout@v2
        with:
          fetch-depth: "0"
      - name: Setup Python
        uses: actions/setup-python@v2
        if: ${{ matrix.python-version != 'none' }}
        with:
          python-version: ${{ matrix.python-version }}
      # run 'install-sys' by itself first even if other targets depend on it to setup pip
      # this ensures that the auto-resolved PIP_XARGS will match the active pip version for following installs
      - name: Install Package Managers
        if: ${{ matrix.python-version != 'none' }}
        run: make install-sys
      - name: Install Dependencies
        if: ${{ matrix.python-version != 'none' }}
        run: make install-pkg install-req install-dev version
      - name: Display Packages
        if: ${{ matrix.python-version != 'none' }}
        run: pip freeze
      - name: Setup Environment Variables
        uses: c-py/action-dotenv-to-setenv@v2
        with:
          env-file: ./ci/magpie.env
      - name: Display Environment Variables
        run: |
          hash -r
          env | sort
      # run '-only' test variations since dependencies are preinstalled, skip some resolution time
      - name: Run Tests
        run: ${{ matrix.test-option }} make stop ${{ matrix.test-case }}-only
      - name: Upload coverage report
        uses: codecov/codecov-action@v2
        if: ${{ success() && matrix.test-case == 'coverage' }}
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          files: ./reports/coverage.xml
          fail_ci_if_error: true
          verbose: true