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Sartools 1.3.2: problem with a wrong library version of jpeg in conda package R 3.3.1 #1

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loraine-gueguen opened this issue Nov 25, 2016 · 1 comment

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@loraine-gueguen
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I open an issue to explain and remember why the git branch version_1_3_2 is not ok yet:

I updated the sartools files for Galaxy to version 1.3.2, with the conda package. But the planemo tests fail when generating the figures with error:

unable to load shared object '/tmp/tmp1qtAns/job_working_directory/000/3/conda-env/lib64/R/modules//R_X11.so':
libjpeg.so.8: cannot open shared object file: No such file or directory

Looking into the job working directory of planemo test in rep conda-env/lib64/, we can find libjpeg.so, libjpeg.so.9, libjpeg.so.9.2.0, but not libjpeg.so.8

This error seems to be due to the R 3.3.1 conda package. See here : ContinuumIO/anaconda-issues#1063

@loraine-gueguen
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I have runned the planemo tests again and they are fine now. Not sure exactly why...
The PR for this new version of the wrapper : #4

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