_quarto.yml

project:
  type: website

website:
  title: "Peter Mac Nextflow Workshop"
  navbar:
    left:
      - href: index.qmd
        text: Home
      - href: workshops/00_setup.qmd
        text: Setup
      - text: Sessions
        menu:
        - text: "Introduction to Nextflow and Nf-core"
          href: sessions/1_intro_run_nf.html
        - text: "Developing bioinformatics workflows with Nextflow" 
          href: sessions/2_nf_dev_intro.html
      - text: Workshop
        menu:
        - text: "Introduction to Nextflow"
          href: workshops/1.1_intro_nextflow.html
        - text: "Introduction to nf-core"
          href: workshops/1.2_intro_nf_core.html
        - text: "Customising & running nf-core pipelines"
          href: workshops/2.1_customise_and_run.html
        - text: "Troubleshooting Nextflow run"
          href: workshops/2.2_troubleshooting.html
        - text: "Best practise, tips and tricks"
          href: workshops/2.3_tips_and_tricks.html
        - text: "Creating a workflow"
          href: workshops/3.1_creating_a_workflow.html
        - text: "Modularisation"
          href: workshops/4.1_modules.html
        - text: "Nf-core Template"
          href: workshops/5.1_nf_core_template.html
        - text: "Nextflow Operators"
          href: workshops/6.1_operators.html
        - text: "Metadata Propagation"
          href: workshops/7.1_metadata_propagation.html
        - text: "Output, scatter, and Gather"
          href: workshops/8.1_scatter_gather_output.html

format:
  html:
    theme: cosmo
    css: styles.css
    toc: true