- Update
read_msfragger_from_DMS
- Add
read_MSstats_from_MSFragger_job
to create an MSnSet from an MSFragger-generated MSstats.csv file. - Fix errors caught by
devtools::check()
- Modify examples to only run if connection to PNNL's DMS is successful
- Minor documentation updates
- Implement
R-CMD-check
andpkgdown
GitHub actions. The former only currently runs on a Windows machine, due to needing ODBC drivers for Mac and Unix.pkgdown
runs when new releases are generated, though it can also be initiated manually.
- Initial version with MSFragger output reading capability