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History / Preparing VCF Files

Revisions

  • docs: reorganize VCF docs

    @markwoon markwoon committed Sep 7, 2024
    c7f26e7

  • docs: update wiki to be developer-focused - replace many pages with links to new equivalent pages on the main site - remove unused support files

    @whaleyr whaleyr committed Mar 31, 2022
    aaedd79

  • fix: fold pharmcat_positions.vcf into DataManager, remove pharmcat_intervals.txt

    @markwoon markwoon committed Sep 27, 2021
    210508a

  • docs: doc cleanup

    @markwoon markwoon committed May 25, 2021
    c73887f

  • docs: fix normalization command

    @BinglanLi BinglanLi committed May 25, 2021
    e540588

  • docs: more VCF doc tweaks

    @markwoon markwoon committed May 25, 2021
    603b4a1

  • doc: update the instruction and command for the preprocessing tool

    @BinglanLi BinglanLi committed May 24, 2021
    9410e72

  • docs: update alignment doc

    @markwoon markwoon committed May 24, 2021
    e52c994

  • docs: update vcf docs

    @markwoon markwoon committed May 24, 2021
    0538dd1

  • Updated Preparing VCF Files (markdown)

    @BinglanLi BinglanLi committed May 24, 2021
    e80d867

  • doc: update the state-of-the-art solution

    @BinglanLi BinglanLi committed May 24, 2021
    26d566e

  • docs: improve docs

    @markwoon markwoon committed May 24, 2021
    b15aa91

  • add descriptions of the GATK LiftoverVcf tool functions.

    @BinglanLi BinglanLi committed Mar 31, 2021
    e87de0c

  • Updated Preparing VCF Files (markdown)

    @BinglanLi BinglanLi committed Mar 31, 2021
    4182ed6

  • update liftover using the GATK tool

    @BinglanLi BinglanLi committed Mar 31, 2021
    4f955c0

  • Updated Preparing VCF Files (markdown)

    @BinglanLi BinglanLi committed Jan 8, 2021
    8442d4a

  • Add example command for generating intervals

    @whaleyr whaleyr committed May 7, 2020
    0e04214

  • Update wording for reference allele requiremnts

    @whaleyr whaleyr committed May 7, 2020
    ba404ba

  • Update docs about chromosomal intervals

    @whaleyr whaleyr committed Feb 25, 2020
    10e97fd

  • Update PharmCAT wiki * add an example VCF file for reference * better separate the content of VCF requirements and VCF preparation examples * clarify the insertion/deletion requirements and add helpful examples * remove all references to the Docker preprocessor (no longer available) * reorganize the homepage to make it more coherent

    @whaleyr whaleyr committed May 21, 2018
    aa22045

  • Updated Preparing VCF Files (markdown)

    @alavertu alavertu committed Apr 12, 2018
    01c8bc3

  • Updated Preparing VCF Files (markdown)

    @alavertu alavertu committed Apr 10, 2018
    557ee86

  • Updated Preparing VCF Files (markdown)

    @alavertu alavertu committed Mar 17, 2018
    e7396d2

  • Updated Preparing VCF Files (markdown)

    @whaleyr whaleyr committed Mar 6, 2018
    582930f

  • Updated preparing VCF file instructions with Docker instructions.

    @lester-pharmgkb lester-pharmgkb committed Apr 13, 2017
    13c1b87

  • Updated Preparing VCF Files (markdown)

    @lester-pharmgkb lester-pharmgkb committed Oct 27, 2016
    ff1035d

  • Updated Preparing VCF Files (markdown)

    @lester-pharmgkb lester-pharmgkb committed Oct 27, 2016
    0257b6c

  • Adding info on additional remap issue.

    @lester-pharmgkb lester-pharmgkb committed Oct 27, 2016
    de0311a

  • Updated Preparing VCF Files (markdown)

    @markwoon markwoon committed Oct 21, 2016
    cda7d05

  • Updated VCF preparation instructions and cleaned text.

    @lester-pharmgkb lester-pharmgkb committed Oct 20, 2016
    c884e94