update Python version

Author: haobibo

docker_atom/work/script-setup.sh

@@ -55,7 +55,7 @@ EOF
 setup_conda_with_mamba() {
   local PREFIX="${CONDA_PREFIX:-/opt/conda}"
   mkdir -pv "${PREFIX}"
-  VERSION_PYTHON=${1:-"3.10"}; shift 1;
+  VERSION_PYTHON=${1:-"3.11"}; shift 1;
   mamba install -y --root-prefix="${PREFIX}" --prefix="${PREFIX}" -c "conda-forge" conda pip python="${VERSION_PYTHON}"
   setup_conda_postprocess
 }
@@ -116,7 +116,7 @@ setup_java_base() {
     URL_OPENJDK=${JDK_URL_MSFT}
   else
     echo "ORCA download URL ref: ${JDK_URL_ORCA}"
-    URL_OPENJDK="https://javadl.oracle.com/webapps/download/GetFile/1.8.0_351-b10/10e8cce67c7843478f41411b7003171c/linux-i586/jdk-8u351-linux-${ARCH}.tar.gz"
+    URL_OPENJDK="https://javadl.oracle.com/webapps/download/GetFile/1.8.0_361-b09/0ae14417abb444ebb02b9815e2103550/linux-i586/jdk-8u361-linux-${ARCH}.tar.gz"
   fi
 
      echo "Installing JDK version ${VER_JDK} from: ${URL_OPENJDK}" \
@@ -155,7 +155,7 @@ setup_R_base() {
   && echo "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/" > /etc/apt/sources.list.d/cran.list \
   && install_apt  /opt/utils/install_list_R_base.apt \
   && echo "options(repos=structure(c(CRAN=\"https://cloud.r-project.org\")))" >> /etc/R/Rprofile.site \
-  && R -e "install.packages(c('devtools'),clean=T,quiet=T);" \
+  && R -e "install.packages(c('devtools'),clean=T,quiet=F);" \
   && ( type java && type R && R CMD javareconf || true ) \
   && echo "@ Version of R: $(R --version)"
 }

docker_base/Dockerfile

@@ -5,7 +5,7 @@ ARG BASE_IMG="atom"
 FROM ${BASE_NAMESPACE:+$BASE_NAMESPACE/}${BASE_IMG}
 LABEL maintainer="haobibo@gmail.com"
 
-ARG PYTHON_VERSION="3.10"
+ARG PYTHON_VERSION="3.11"
 
 ENV CONDA_PREFIX=/opt/conda
 ENV PATH=$PATH:${CONDA_PREFIX}/bin

docker_core/Dockerfile

@@ -64,14 +64,14 @@ RUN source /opt/utils/script-utils.sh \
  && for profile in $(echo $ARG_PROFILE_PYTHON | tr "," "\n") ; do ( echo "Pip install for ${profile}" ; install_pip "/opt/utils/install_list_PY_${profile}.pip" ; ) ; done \
  #  Handle tensorflow installation 1.x/2.x, cpu/gpu: https://www.tensorflow.org/install/source#gpu
  && ( $(grep -q "tf" <<< "${ARG_PROFILE_PYTHON}") && ( \
-         TF=$( [ -x "$(command -v nvcc)" ] && echo "tensorflow-gpu" || echo "tensorflow") \
-      && V=$($(grep -q "tf1" <<< "${ARG_PROFILE_PYTHON}") && echo "1" || echo "2" ) \
+         V=$($(grep -q "tf1" <<< "${ARG_PROFILE_PYTHON}") && echo "1" || echo "2" ) \
+         TF=$( [ "$V" == "1" ] && echo "tensorflow-gpu" || echo "tensorflow") \
       && pip install --pre -U "${TF}==${V}.*" \
     ) || echo "Skip tf install" ) \
  #  Handle pytorch installation 1.x only, cpu/gpu: https://pytorch.org/get-started/locally/
  && ( $(grep -q "torch" <<< "${ARG_PROFILE_PYTHON}") && ( \
          CUDA_VER=$(echo "${CUDA_VERSION:0:4}" | sed 's/\.//' ) \
-      && IDX=$( [ -x "$(command -v nvcc)" ] && echo "cu${CUDA_VER:-113}" || echo "cpu" ) \
+      && IDX=$( [ -x "$(command -v nvcc)" ] && echo "cu${CUDA_VER:-116}" || echo "cpu" ) \
       && pip install --pre -U torch -f "https://download.pytorch.org/whl/${IDX}/torch_stable.html" \
     ) || echo "Skip pytorch install" ) \
  #  Handle paddle installation, cpu/gpu: https://www.paddlepaddle.org.cn/