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.Rbuildignore
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cache$
MASTAnalysis_cache$
tmp_R_cache_boot_noact_vs_stim\.RData$
tmp_R_cache_boot_noact_vs_unstim\.RData$
tmp_R_cache_boot_shalek\.RData$
tmp_R_cache_boots\.RData$
tmp_R_cache_gsea_noact_stim\.RData$
tmp_R_cache_gsea_noact_unstim\.RData$
tmp_R_cache_gsea\.RData$
tmp_R_cache_gsea\.time\.RData$
MASTAnalysis_files$
MASTDataPackage\.Rproj$
\.gitignore$
cache/boots_0f0a39741cac57d51641b44c4c24e978\.rdb$
cache/data_252e94d52421261b9b3200c71f036757\.rdb$
cache/fig1_3d5a63836646ff767206ba60c5913e65\.rdb$
cache/figure_1_png_94d1347c0d5f674033140817a0b9fe70\.rdb$
cache/figure1_55e873d8ff637f182e3626c93766cc05\.rdb$
cache/figure2_f3a4e0e6560483c05020e3b2b0558588\.rdb$
cache/figure2_png_df00c22b29324b411bb6b7f56c7e424e\.rdb$
cache/figure3_pdf_c7ac4ab480b8925549204df7fce9e37f\.rdb$
cache/figure3_png_8bb6fc940b87b87728c3db224b95ca49\.rdb$
cache/figure3b_4d0b82c91dea74cdfef8702446d307ab\.rdb$
cache/filter_outlying_cell_f54cfbd4f23b30742e1cea24fa523fbf\.rdb$
cache/gsea_3257fe4fcb9cfcadfda207e8f84b0d2b\.rdb$
cache/module_84dd07168288edd816b0eaacd5b65385\.rdb$
cache/network_d8516cacb733c31ca9f9ceba11d5eab6\.rdb$
cache/network_nong_0bf525ce8aaf14472cd666894868549a\.rdb$
cache/nongeneson_4e3ee5b75e3a7c88a3b7843a6d3c709f\.rdb$
cache/nongresidcor_b2d5ea3a230a87470ae3d3e79404a4ae\.rdb$
cache/outlier_stim_DE_526e0e629623167ae54125272009bfc3\.rdb$
cache/pca_3c4ec9908de9372b30668d7dadb5e1d4\.rdb$
cache/residualCor_ec98e8ccca9011f94e7508ca4a65d818\.rdb$
cache/residuals_3340b16db515999354556213f11c90ab\.rdb$
cache/scores_7ed08ba30bc0fe174a1160bf6609a069\.rdb$
cache/scores_fit_c41308bd5a119661d014bbd4a84bc983\.rdb$
cache/supp_fig_percent_deviance_7d8bcdd6b79cb65119c152be447933b1\.rdb$
cache/unnamed-chunk-10_314507a900b32533eebe5668d67a7642\.rdb$
cache/unnamed-chunk-11_3dbbf0991772af9ad33bf9ec3fbbeb28\.rdb$
cache/unnamed-chunk-12_6e9b0976df4afe4c2fa0ed0980684efd\.rdb$
cache/unnamed-chunk-13_94a1f71d2aac69f01b58ca6b2de34cb9\.rdb$
cache/unnamed-chunk-14_f95e4e8b09a564eb109af1406ba01290\.rdb$
cache/unnamed-chunk-15_854a4a947f8c29e933e7d610e23ef4ac\.rdb$
cache/unnamed-chunk-16_478d6f008127978f56b4a89e9f89d015\.rdb$
cache/unnamed-chunk-17_06a52d4f55612079ace6819c3d264c87\.rdb$
cache/unnamed-chunk-18_918a1072529372c87fcde31ffdb42b33\.rdb$
cache/unnamed-chunk-5_f27e78fc7646e077f902ac16a0020634\.rdb$
cache/unnamed-chunk-6_576478ff3023de8b903415d3ac4192f4\.rdb$
cache/unnamed-chunk-7_90d22ed0ce6819b55d8ebd772c8e10e5\.rdb$
cache/unnamed-chunk-8_0b27c2236297a95e2711f4b0357fba3e\.rdb$
cache/unnamed-chunk-9_87e38918c2f5780d2532072fe4ceca28\.rdb$
cache/zlm_d97ebb0b21e72918b586ea9110f19137\.rdb$
MASTAnalysis_cache/html/boots_07851af3b1ad6e4e46b64f0564c54995\.rdb$
MASTAnalysis_cache/html/data_dd713d90f9a6e8dfc09a622f3f63dfe7\.rdb$
MASTAnalysis_cache/html/fig1_0590c99b2d27adf833e05f4deae401e3\.rdb$
MASTAnalysis_cache/html/fig1_1_6e63b42afda4ffab1ae8fa7777506e29\.rdb$
MASTAnalysis_cache/html/figure_1_png_d06cc6d1aa658ec7615ead63a825a21e\.rdb$
MASTAnalysis_cache/html/figure1_467bd2d6759d1d593f012ac4b1d223f2\.rdb$
MASTAnalysis_cache/html/figure2_14eda1baf17d4de50e458b98a9647322\.rdb$
MASTAnalysis_cache/html/figure2_png_457011511cd5180cdd7b8c418a79bcad\.rdb$
MASTAnalysis_cache/html/figure3_pdf_5a832b3810720e394457e1d3727b4775\.rdb$
MASTAnalysis_cache/html/figure3_png_304f9c15112efe1eb8b34948bac72c91\.rdb$
MASTAnalysis_cache/html/figure3b_597ac96349630a07ab311731403763a1\.rdb$
MASTAnalysis_cache/html/filter_outlying_cell_ba19f5bb6b80153e79ccaa8f9d4eb9d0\.rdb$
MASTAnalysis_cache/html/gsea_508272c58d8da84d4ea74cd9b31223ba\.rdb$
MASTAnalysis_cache/html/module_9f581e275568b102a5a4dd3981302b25\.rdb$
MASTAnalysis_cache/html/network_b172ea561414551034069ad696712786\.rdb$
MASTAnalysis_cache/html/network_nong_279b360443df1d1071d2e5733e2a2af5\.rdb$
MASTAnalysis_cache/html/nongeneson_ff346a5052d62028291e2bd5e54aa6e8\.rdb$
MASTAnalysis_cache/html/nongresidcor_770d72afb65f1cd82935d22411910cd2\.rdb$
MASTAnalysis_cache/html/outlier_stim_DE_6784fa6806216be9de10c069532235d2\.rdb$
MASTAnalysis_cache/html/pca_1a8691524920cc27ab9ddfde2eb6e71b\.rdb$
MASTAnalysis_cache/html/residualCor_453ef4b6f85c65b7844dda56f3b34976\.rdb$
MASTAnalysis_cache/html/residuals_bd5eae5dc09d9a964bb9d65756f8170c\.rdb$
MASTAnalysis_cache/html/scores_52b7f05f7683d69b4b945fad5b3b3ae3\.rdb$
MASTAnalysis_cache/html/scores_fit_321e88b15b960509b242978e15140fed\.rdb$
MASTAnalysis_cache/html/supp_fig_percent_deviance_89677608d16e261811a20fca73aea801\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-10_73d2e904f72492490faee1a358c023dd\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-11_68bc6a6ef35e1cb040e0d0c8598438ca\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-12_b66e1f16fa44249e7c437cefa592acc2\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-13_b51f4a541c0d89fad733d990ce2ef871\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-14_fed57c5f02072779ceca5e53feadf5c5\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-15_7f07bd31d336582c1e37b3380a56b42e\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-16_131d5d1a8274410ab0c4b94254a49990\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-17_cc1ca9c83d466301d6a08a6e57831f86\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-18_e79ec1192fd129edd8fb9f97a1e197fa\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-19_fd96ebeac24d6bf2fa34f88161123652\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-20_37acd87a1f3931ab63a27b9bbcc54cac\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-21_e6e8f5b590ac4c1288d51e1640518df5\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-5_c6d2270c3e7db97fdf908e52c2e92b85\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-6_38129653be6e0ecbb82dee233f880019\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-7_55d8a745c8c7dee1f3de1f1fa2ed646d\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-8_358f112c69fa5a838654f1878847a3f0\.rdb$
MASTAnalysis_cache/html/unnamed-chunk-9_4b86b3cae2fff221f2b37f1d681c7d63\.rdb$
MASTAnalysis_cache/html/zlm_4ea42206194ec0d01e5fe5a5831290fc\.rdb$
cache/boots_0f0a39741cac57d51641b44c4c24e978\.rdx$
cache/data_252e94d52421261b9b3200c71f036757\.rdx$
cache/fig1_3d5a63836646ff767206ba60c5913e65\.rdx$
cache/figure_1_png_94d1347c0d5f674033140817a0b9fe70\.rdx$
cache/figure1_55e873d8ff637f182e3626c93766cc05\.rdx$
cache/figure2_f3a4e0e6560483c05020e3b2b0558588\.rdx$
cache/figure2_png_df00c22b29324b411bb6b7f56c7e424e\.rdx$
cache/figure3_pdf_c7ac4ab480b8925549204df7fce9e37f\.rdx$
cache/figure3_png_8bb6fc940b87b87728c3db224b95ca49\.rdx$
cache/figure3b_4d0b82c91dea74cdfef8702446d307ab\.rdx$
cache/filter_outlying_cell_f54cfbd4f23b30742e1cea24fa523fbf\.rdx$
cache/gsea_3257fe4fcb9cfcadfda207e8f84b0d2b\.rdx$
cache/module_84dd07168288edd816b0eaacd5b65385\.rdx$
cache/network_d8516cacb733c31ca9f9ceba11d5eab6\.rdx$
cache/network_nong_0bf525ce8aaf14472cd666894868549a\.rdx$
cache/nongeneson_4e3ee5b75e3a7c88a3b7843a6d3c709f\.rdx$
cache/nongresidcor_b2d5ea3a230a87470ae3d3e79404a4ae\.rdx$
cache/outlier_stim_DE_526e0e629623167ae54125272009bfc3\.rdx$
cache/pca_3c4ec9908de9372b30668d7dadb5e1d4\.rdx$
cache/residualCor_ec98e8ccca9011f94e7508ca4a65d818\.rdx$
cache/residuals_3340b16db515999354556213f11c90ab\.rdx$
cache/scores_7ed08ba30bc0fe174a1160bf6609a069\.rdx$
cache/scores_fit_c41308bd5a119661d014bbd4a84bc983\.rdx$
cache/supp_fig_percent_deviance_7d8bcdd6b79cb65119c152be447933b1\.rdx$
cache/unnamed-chunk-10_314507a900b32533eebe5668d67a7642\.rdx$
cache/unnamed-chunk-11_3dbbf0991772af9ad33bf9ec3fbbeb28\.rdx$
cache/unnamed-chunk-12_6e9b0976df4afe4c2fa0ed0980684efd\.rdx$
cache/unnamed-chunk-13_94a1f71d2aac69f01b58ca6b2de34cb9\.rdx$
cache/unnamed-chunk-14_f95e4e8b09a564eb109af1406ba01290\.rdx$
cache/unnamed-chunk-15_854a4a947f8c29e933e7d610e23ef4ac\.rdx$
cache/unnamed-chunk-16_478d6f008127978f56b4a89e9f89d015\.rdx$
cache/unnamed-chunk-17_06a52d4f55612079ace6819c3d264c87\.rdx$
cache/unnamed-chunk-18_918a1072529372c87fcde31ffdb42b33\.rdx$
cache/unnamed-chunk-5_f27e78fc7646e077f902ac16a0020634\.rdx$
cache/unnamed-chunk-6_576478ff3023de8b903415d3ac4192f4\.rdx$
cache/unnamed-chunk-7_90d22ed0ce6819b55d8ebd772c8e10e5\.rdx$
cache/unnamed-chunk-8_0b27c2236297a95e2711f4b0357fba3e\.rdx$
cache/unnamed-chunk-9_87e38918c2f5780d2532072fe4ceca28\.rdx$
cache/zlm_d97ebb0b21e72918b586ea9110f19137\.rdx$
MASTAnalysis_cache/html/boots_07851af3b1ad6e4e46b64f0564c54995\.rdx$
MASTAnalysis_cache/html/data_dd713d90f9a6e8dfc09a622f3f63dfe7\.rdx$
MASTAnalysis_cache/html/fig1_0590c99b2d27adf833e05f4deae401e3\.rdx$
MASTAnalysis_cache/html/fig1_1_6e63b42afda4ffab1ae8fa7777506e29\.rdx$
MASTAnalysis_cache/html/figure_1_png_d06cc6d1aa658ec7615ead63a825a21e\.rdx$
MASTAnalysis_cache/html/figure1_467bd2d6759d1d593f012ac4b1d223f2\.rdx$
MASTAnalysis_cache/html/figure2_14eda1baf17d4de50e458b98a9647322\.rdx$
MASTAnalysis_cache/html/figure2_png_457011511cd5180cdd7b8c418a79bcad\.rdx$
MASTAnalysis_cache/html/figure3_pdf_5a832b3810720e394457e1d3727b4775\.rdx$
MASTAnalysis_cache/html/figure3_png_304f9c15112efe1eb8b34948bac72c91\.rdx$
MASTAnalysis_cache/html/figure3b_597ac96349630a07ab311731403763a1\.rdx$
MASTAnalysis_cache/html/filter_outlying_cell_ba19f5bb6b80153e79ccaa8f9d4eb9d0\.rdx$
MASTAnalysis_cache/html/gsea_508272c58d8da84d4ea74cd9b31223ba\.rdx$
MASTAnalysis_cache/html/module_9f581e275568b102a5a4dd3981302b25\.rdx$
MASTAnalysis_cache/html/network_b172ea561414551034069ad696712786\.rdx$
MASTAnalysis_cache/html/network_nong_279b360443df1d1071d2e5733e2a2af5\.rdx$
MASTAnalysis_cache/html/nongeneson_ff346a5052d62028291e2bd5e54aa6e8\.rdx$
MASTAnalysis_cache/html/nongresidcor_770d72afb65f1cd82935d22411910cd2\.rdx$
MASTAnalysis_cache/html/outlier_stim_DE_6784fa6806216be9de10c069532235d2\.rdx$
MASTAnalysis_cache/html/pca_1a8691524920cc27ab9ddfde2eb6e71b\.rdx$
MASTAnalysis_cache/html/residualCor_453ef4b6f85c65b7844dda56f3b34976\.rdx$
MASTAnalysis_cache/html/residuals_bd5eae5dc09d9a964bb9d65756f8170c\.rdx$
MASTAnalysis_cache/html/scores_52b7f05f7683d69b4b945fad5b3b3ae3\.rdx$
MASTAnalysis_cache/html/scores_fit_321e88b15b960509b242978e15140fed\.rdx$
MASTAnalysis_cache/html/supp_fig_percent_deviance_89677608d16e261811a20fca73aea801\.rdx$
MASTAnalysis_cache/html/unnamed-chunk-10_73d2e904f72492490faee1a358c023dd\.rdx$
MASTAnalysis_cache/html/unnamed-chunk-11_68bc6a6ef35e1cb040e0d0c8598438ca\.rdx$
MASTAnalysis_cache/html/unnamed-chunk-12_b66e1f16fa44249e7c437cefa592acc2\.rdx$
MASTAnalysis_cache/html/unnamed-chunk-13_b51f4a541c0d89fad733d990ce2ef871\.rdx$
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MASTAnalysis_cache/html/zlm_4ea42206194ec0d01e5fe5a5831290fc\.rdx$