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BagOfVcf: can't filter contigs without providing lengths #164

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grahamgower opened this issue Jul 10, 2022 · 0 comments
Open

BagOfVcf: can't filter contigs without providing lengths #164

grahamgower opened this issue Jul 10, 2022 · 0 comments

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@grahamgower
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Filtering contigs is important (e.g. to exclude sex chromosomes). But, the only way to filter them right now is via __init__'s contig_lengths dict arg. Most vcfs have contig lengths in the header, so needing to specifying the lengths again is awkward.
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@grahamgower