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Merging VAE and AAE clusters w/o snakemake workflow? #280

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jnesme opened this issue Nov 30, 2023 · 1 comment
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Merging VAE and AAE clusters w/o snakemake workflow? #280

jnesme opened this issue Nov 30, 2023 · 1 comment

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@jnesme
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jnesme commented Nov 30, 2023

Hi Jakob et al.

I am running VAMB/AVAMB on a dataset in a stepwise manner (ie. not through the avamb snakemake workflow) and I was wondering if there is a small how-to somewhere to merge the binning results, using checkM2 results on all clusters ? I would like to avoid re-running all steps from the raw reads

I can do it "manually" following the snakemake file operations but I was wondering if I am not missing an obvious ressource somewhere that would help me do that faster ?

Best,
Joseph.
@jnesme jnesme changed the title Merging VAE and AAE Merging VAE and AAE clusters w/o snakemake workflow? Nov 30, 2023
@jakobnissen
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Dear Joseph,

We don't have any 'official' resource to do that - manually running the steps of the workflow is your best bet.
Closing as solved - but you're of course welcome to reopen if you have more questions.

Br
Jakob

@LorrieMacc LorrieMacc mentioned this issue Jan 30, 2024
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@jnesme @jakobnissen