Installing data.table on azureml ubuntu 16.04 - datatable.so not found #4709
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Thank you for reporting.
First we need to identify what is causing the problem Could you please check if you are getting same error when using
Unfortunately this will probably require ssh access, but it will help to narrow down where the issue may be coming from. |
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I do not have ssh access. |
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@hermandr have you been able to try |
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Hi I solved it by running this command before installing the package in R apt-get install -y pkg-config |
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@hermandr thanks for update |
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Hi,
I am installing data.table in azureml compute cluster instance.
I am encountering issue related to other posts about datatable.so not found.
data.table is required by xgboost.
The command '/bin/sh -c R -e "remotes::install_version('data.table', version = '1.12.8'); remotes::install_version('xgboost', version = '0.82.1'); remotes::install_version('e1071'); remotes::install_github('Azure/azureml-sdk-for-r')"' returned a non-zero code: 1How do I fix it without having access to the dockerfile and ssh?
The logs
�[0m�[91m* installing *source* package ‘data.table’ ... �[0m�[91m** package ‘data.table’ successfully unpacked and MD5 sums checked �[0m�[91m** using staged installation �[0m*** pkg-config is not installed. *** Compilation will now be attempted and if it works you can ignore this message. However, *** if compilation fails, try 'locate zlib.h zconf.h' and ensure the zlib development library *** is installed : *** deb: zlib1g-dev (Debian, Ubuntu, ...) *** rpm: zlib-devel (Fedora, EPEL, ...) *** brew: zlib (OSX) *** Note that zlib is required to compile R itself so you may find the advice in the R-admin *** guide helpful regarding zlib. On Debian/Ubuntu, zlib1g-dev is a dependency of r-base as *** shown by 'apt-cache showsrc r-base | grep ^Build-Depends | grep zlib', and therefore *** 'sudo apt-get build-dep r-base' should be sufficient too. *** To silence this message, please ensure that : *** 1) 'pkg-config --exists zlib' succeeds (i.e. $? -eq 0) *** 2) 'pkg-config --libs zlib' contains -lz *** Compilation will now be attempted ... �[91m** libs �[0mx86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c assign.c -o assign.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c between.c -o between.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c bmerge.c -o bmerge.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c chmatch.c -o chmatch.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c cj.c -o cj.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c coalesce.c -o coalesce.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c dogroups.c -o dogroups.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c fastmean.c -o fastmean.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c fcast.c -o fcast.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c fifelse.c -o fifelse.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c fmelt.c -o fmelt.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c forder.c -o forder.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c frank.c -o frank.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c fread.c -o fread.o �[91mfread.c: In function 'freadMain': �[0m�[91mfread.c:1293:5: warning: ignoring return value of 'strtod', declared with attribute warn_unused_result [-Wunused-result] (void)strtod(ch, &end); // careful not to let "" get to here (see continue above) as strtod considers "" numeric ^~~~~~~~~~~~~~~~~~~~~~ �[0mx86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c freadR.c -o freadR.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c froll.c -o froll.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c frollR.c -o frollR.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c frolladaptive.c -o frolladaptive.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c fsort.c -o fsort.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c fwrite.c -o fwrite.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c fwriteR.c -o fwriteR.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c gsumm.c -o gsumm.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c ijoin.c -o ijoin.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c init.c -o init.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c inrange.c -o inrange.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c nafill.c -o nafill.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c nqrecreateindices.c -o nqrecreateindices.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c openmp-utils.c -o openmp-utils.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c quickselect.c -o quickselect.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c rbindlist.c -o rbindlist.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c reorder.c -o reorder.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c shift.c -o shift.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c snprintf.c -o snprintf.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c subset.c -o subset.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c transpose.c -o transpose.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c types.c -o types.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c uniqlist.c -o uniqlist.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c utils.c -o utils.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c vecseq.c -o vecseq.o x86_64-conda_cos6-linux-gnu-cc -I"/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/include" -DNDEBUG -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -I/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1570124924484/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/azureml-envs/azureml_7930c16823057d9637678fa895a4db69=/usr/local/src/conda-prefix -c wrappers.c -o wrappers.o x86_64-conda_cos6-linux-gnu-cc -shared -L/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -L/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -Wl,-rpath-link,/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nafill.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -L/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/lib -lR �[91minstalling to /azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/library/00LOCK-data.table/00new/data.table/libs �[0m�[91m** R �[0m�[91m** inst �[0m�[91m** byte-compile and prepare package for lazy loading �[0m�[91m** help �[0m�[91m*** installing help indices �[0m�[91m** building package indices �[0m�[91m** installing vignettes �[0m�[91m** testing if installed package can be loaded from temporary location �[0mError: package or namespace load failed for ‘data.table’ in library.dynam(lib, package, package.lib): shared object ‘datatable.so’ not found Error: loading failed Execution halted �[91mERROR: loading failed �[0m�[91m* removing ‘/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/library/data.table’ �[0m�[91m* restoring previous ‘/azureml-envs/azureml_7930c16823057d9637678fa895a4db69/lib/R/library/data.table’The text was updated successfully, but these errors were encountered: