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staphopia_short_seqs.fasta
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staphopia_short_seqs.fasta
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>del_icaR-icaA
TTGCAATTACAAACCGTT
>wt_icaR-icaA
TTGCAATTACAAATATTTCCGTT
>Sa1-F
AAGCTAAGTTCGGGCACA
>Sa1-R
GTAATGTTTGGGAGCCAT
>Sa2-F
TCAAGTAACCCGTCAACTC
>Sa2-R
ATGTCTAAATGTGTGCGTG
>Sa3-F
GAAAAACAAACGGTGCTAT
>Sa3-R
TTATTGACTCTACAGGCTGA
>Sa4-F
ATTGATATTAACGGAACTC
>Sa4-R
TAAACTTATATGCGTGTGT
>Sa5-F
AAAGATGCCAAACTAGCTG
>Sa5-R
CTTGTGGTTTTGTTCTGG
>Sa6-F
GCCATCAATTCAAGGATAG
>Sa6-R
TCTGCAGCTGAGGACAAT
>Sa7-F
GTCCGGTAGCTAGAGGTC
>Sa7-R
GGCGTATGCTTGACTGTGT
>pan-agr
ATGCACATGGTGCACATGC
>agrI-PMC149583
GTCACAAGTACTATAAGCTGCGAT
>agrII-PMC152380
TATTACTAATTGAAAAGTGCCATAGC
>agrII-PMC149583
GTATTACTAATTGAAAAGTGCCATAGC
>agrIII-PMC152380
GTAATGTAATAGCTTGTATAATAATACCCAG
>agrIII-PMC149583
CTGTTGAAAAAGTCAACTAAAAGCTC
>agrIV-PMC149583
CGATAATGCCGTAATACCCG
>SEA-1
GAAAAAAGTCTGAATTGCAGGGAACA
>SEA-2
CAAATAAATCGTAATTAACCGAAGGTTC
>SEB-1
ATTCTATTAAGGACACTAAGTTAGGGA
>SEB-2
ATCCCGTTTCATAAGGCGAGT
>mpSEC-1
GTAAAGTTACAGGTGGCAAAACTTG
>mpSEC-2
CATATCATACCAAAAAGTATTGCCGT
>SED-1
GAATTAAGTAGTACCGCGCTAAATAATATG
>SED-2
GCTGTATTTTTCCTCCGAGAGT
>SEE-1
CAAAGAAATGCTTTAAGCAATCTTAGGC
>SEE-2
CACCTTACCGCCAAAGCTG
>SEG-1
AATTATGTGAATGCTCAACCCGATC
>SEG-2
AAACTTATATGGAACAAAAGGTACTAGTTC
>SEH-1
CAATCACATCATATGCGAAAGCAG
>SEH-2
CATCTACCCAAACATTAGCACC
>SEI-1
CTCAAGGTGATATTGGTGTAGG
>SEI-2
AAAAAACTTACAGGCAGTCCATCTC
>mpSEJ-1
TAACCTCAGACATATATACTTCTTTAACG
>mpSEJ-2
AGTATCATAAAGTTGATTGTTTTCATGCAG
>mpSEN-1
ATGAGATTGTTCTACATAGCTGCAAT
>mpSEN-2
AACTCTGCTCCCACTGAAC
>mpSEO-1
AGTTTGTGTAAGAAGTCAAGTGTAGA
>mpSEO-2
ATCTTTAAATTCAGCAGATATTCCATCTAAC
>mpSEM-1
CTATTAATCTTTGGGTTAATGGAGAAC
>mpSEM-2
TTCAGTTTCGACAGTTTTGTTGTCAT
>TST-1
TTCACTATTTGTAAAAGTGTCAGACCCACT
>TST-2
TACTAATGAATTTTTTTATCGTAAGCCCTT
>mpETA-1
ACTGTAGGAGCTAGTGCATTTGT
>mpETA-3
TGGATACTTTTGTCTATCTTTTTCATCAAC
>mpETB-1
CAGATAAAGAGCTTTATACACACATTAC
>mpETB-2
AGTGAACTTATCTTTCTATTGAAAAACACTC
>PVL-1
ATCATTAGGTAAAATGTCTGGACATGATCCA
>NPVL-2
GCATCAASTGTATTGGATAGCAAAAGC
>LUKDE-1
TGAAAAAGGTTCAAAGTTGATACGAG
>LUKDE-2
TGTATTCGATAGCAAAAGCAGTGCA
>LUKM-1
TGGATGTTACCTATGCAACCTAC
>LUKM-2
GTTCGTTTCCATATAATGAATCACTAC
>HLA-1
CTGATTACTATCCAAGAAATTCGATTG
>HLA-2
CTTTCCAGCCTACTTTTTTATCAGT
>HLB-1
GTGCACTTACTGACAATAGTGC
>HLB-2-2
GTTGATGAGTAGCTACCTTCAGT
>HLD-1
AAGAATTTTTATCTTAATTAAGGAAGGAGTG
>HLD-2
TTAGTGAATTTGTTCACTGTGTCGA
>mpHLG-1
GTCAYAGAGTCCATAATGCATTTAA
>mpHLG-2
CACCAAATGTATAGCCTAAAGTG
>mpHLG2-1
GACATAGAGTCCATAATGCATTYGT
>mpHLG2-2
ATAGTCATTAGGATTAGGTTTCACAAAG
>EDIN-1
GAAGTATCTAATACTTCTTTAGCAGC
>EDIN-2
TCATTTGACAATTCTACACTTCCAAC
>tCC8-A_FB+
ACCTATACCTGAACGTCAA
>non-tCC8-G_TB+
CTATACCTGAGCGTCAAA
>inCC8_FB+
ATCGGACCCGGTAACC
>non-inCC8_TB+
TAATCGGACCTGGTAACC
>CC8a-C_FB+
ATTACTGTAGCAGGGCTG
>nonCC8a-T_TB+
CTGTAGCAGGGTTGC
>CC8b-C_FB+
AAGCTAACAAAATCACCTACTG
>nonCC8b-T_TB+
CAAAGCTAACAAAATTACCTAC
>NewIber-T_FB+
TGCACTTACATATCATCCAT
>nonNewIber-C_TB+
CACTTACATACCATCCATC
>CC8e-C_FB+
TATTAGATGAAGGCCTCAATA
>nonCC8e-T_TB+
TTTATTAGATGAAGGCTTCAATA
>CC8f-T_FB+
TAAACGTCGTAAAGTAGAACAA
>nonCC8f-A_TB+
ACGTAAACGTCGTAAAGAAGAAC
>ST239-C_FB+
TACGACTGACCTGATGC
>non239-T_TB+
CGACTGACTTGATGCC
>pyrRwt
ATGCTAGACCTATTAAAATTGGTTTAGCTGC
>pyrR-K126I
ATGCTAGACCTATTATAATTGGTTTAGCTGC
>rep1-1
TCGCTCAATCACTACCAAGC
>rep1-2
CTTGAACGAGTAAAGCCCTT
>rep2-1
GAGAACCATCAAGGCGAAAT
>rep2-2
ACCAGAATAAGCACTACGTACAATCT
>rep3-1
CCTAATGTATATAATTTTGGTACATAT
>rep3-2
ACATTTTCCTCAAAGAACAT
>rep4-1
ACTATGTCGTTGAGTCTAATGACT
>rep4-2
AGCAAGATAGAATATTTACTTTTAAGTTT
>rep5-1
CTTAAATCTACMTATTCWAAAMAYATGTT
>rep5-2
TCARCGTCAAAWGTRAACTCT
>rep6-1
ACGAATGAAAGATAAAGGAGTAG
>rep6-2
TAAATTCTAGTTTGGCAATCTTAT
>rep7-1
AGACGTAATATGCGTRTTGA
>rep7-2
CCAAAATAYTTYGTTTCTGG
>rep7b-1
CTAATAGCCGGTTAGACGCAC
>rep7b-2
GACGRGARTTTCTATGTAATTCTCC
>rep8-1
TAGATACGACAAAAGAAGAATTACA
>rep8-2
CCAATCATGTAATGTTACAACC
>rep9-1
GCTCGATCARTTTTCAGAAG
>rep9-2
CGCAAACATTTGTCWATTTCTT
>rep10-1
TATAAAGGCTCTCAGAGGCT
>rep10-2
CCAAATTCGAGTAAGAGGTA
>rep10b-1
TAAATAAAGACTCAGGAGAAGTA
>rep10b-2
TAGCAAGTTCTCGAACTGTT
>rep11-1
TCTAGAATGCGTAAAAAGG
>rep11-2
CCTTTGAAGATWGCRGTWAG
>rep12-1
GAGCCTATAACAGAGTACACA
>rep12-2
CAAATATAGGCTTTGTAGTTC
>rep13-1
ATGATGCAATATATTAAGCA
>rep13-2
TACCAGAATAYTTAGCCATTTC
>rep14-1
GAAAGYTTRGATAGYTTTGC
>rep14-2
RTTTTGRCTTTCTTSYTTCA
>rep15-1
CAGTAGAAGAAAATTATAAAGAAC
>rep15-2
GTTATGGCTGGTTTTAATAAA
>rep16-1
CAGGAAAACACTTCGTTTAT
>rep16-2
CTTCTATATCACTATCATTGTCATT
>rep17-1
TACTAACTGTTGGTAATTCGTTAAAT
>rep17-2
ATCAAGGACTCAACCGTAATT
>rep18-1
ACACCAGTCGAAATGAATTT
>rep18-2
AGGAATATCAAGTAATTCATGAAAGT
>rep19-1
GWGATCGCTTARAYTTATCTAT
>rep19-2
YMTTGTTSTGGMAATTCTT
>rep20-1
CTGTGAATYTGGAAGTTCC
>rep20-2
CTAAATATTTRTTYGAAGATGC
>rep21-1
TAGTTATCAAGCTCARARAG
>rep21-2
GMTTSWATRTCTTTATCGCC
>rep22-1
TCCGTTCCCAATTCCACATTGCAA
>rep22-2
TGCGTGCAACGGAAGTGACA
>rep23-1
TGGTCGTGACGCACATTACACA
>rep23-2
CGCTATTTTCCTCCGTATCCGG
>rep24-1
TCACAGAACTTCAAGAATTCCC
>rep24-2
CCTTGCATAGTYTCAACACTTTC
>pMG1-1
GTATTAACACACTGGACTC
>pMG1-2
TCAGTGTAGGCAATAACCC
>pE194-1
GTGTCCATTGTCCATTGTCC
>pE194-2
GCATGCCAGTGCTGTCTATC
>pKKS825a-1
AAGCAATGGCGAACAGTTGGT
>pKKS825a-2
GTCCTCTTTTGCCCAATCTGGA
>pKKS825b-1
GAACGCTTCCTCAGCCGACT
>pKKS825b-2
ACCACTCAGGAAACTTCTCTTCTGC
>pDLK3-1
ATCAGCACCTGAAGGGTGGA
>pDLK3-2
AACGGAAACCAATCATCAAATCGA
>pAVX-1
CCACGCACCTGTAGATGAACGTGT
>pAVX-2
ACGTTTTGCCATCGATTGGAACGC
>pWBG764-1
GTATCTGATTCGTATTATTGG
>pWBG764-2
ATCTTTCAGCTACTACGTTC
>SAP015B-1
TTCCTGTGACATCACGCCACAT
>SAP015B-2
GTGCATGGCGAAAGGCGAGA
>SAP099B-1
TTGCATGGCTTCGACACTTTC
>SAP099B-2
CTGACGCAAAGGTTATGTATGCTCT
>pETB-1
GTCATTGGACGCCTAATCC
>pETB-2
GACGAACGTAAGGATGATTTAG
>SaPI4S
ATGGCAGGTGGACCAAGAAGAGGCGGACGTCGTCG
>SaPI4AS
CATTCTAGTAGACACCTCTGTCGTTTTAACATAAG
>SaPIbovS
GTTATGGGAGACTACCGTACGTATGATCACACAG
>SaPIbovAS
GTTGCTATTTATGGTGGCCTTTCAAGCAATATTAG
>SaPImw2S
CATCATGTTGGTTGTTTATCACTTTTCATGATGC
>SaPImw2AS
GAAAGAAAAAGAAAAGCAAAAAGATGACGACCACAG
>SaPI3externalAS
GCTGTAGAAAGTGCGAAAGATAATCCTTATGC
>SaPI3externalS
GCGAAATAGATTCATCATTAACTTGAGGGAG
>SaPI2S
AAATTACCGCTACACTAAAGGACAAATTTATC
>SaPI2AS
GGTATCGTTGATCCAACTAAAGTAACACGCTCAGC
>etdS
CGTTGTGAAAGATAATGAATCGGTTTGGGCTG
>etdAS
CTAAAGTGGCAGTAACAAATGATTTTAGTTTC
>att_I
AAAGAAGAACAATAATAT
>att_II
TAATTATTCCCACTCAAT
>att_III
TCCCGCCGTCTCCAT
>att_IV
TTATTTAGCAGGAATAA
>att_V_1
GTTTTACCATCATTCCCGGCAT
>att_V_2
ATTTTACATCATTCCTGGCAT
>att_V_3
ATGCCAGGTATGATGTAAAAC
>att_V_4
GTTTTACATCATTCCTGGCAT
>att_V_5
GTTTTACCATCATTCCCGGCAT
>att_V_6
GTTTTACATCATTCCTGGCAT
>attB_LHS
AGAGCATTTAAGATTATGCGTGGNNNNNNNTATCATAA
>attB_RHS
TATCATAAGTAAAACTAAAAAATT
>attL_LHS
AACCTCATCATTAACTGATACGCNNNNNNNTATCATAA
>attL_RHS
TATCATAAGTAAAACTAAAAAATT
>attR_LHS
AGAGCATTTAAGATTATGCGTGGNNNNNNNTATCATAA
>attR_RHS
TATCATAAATGATGCGGTTTTTTCAG