-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathRF00003.sto
109 lines (108 loc) · 24.6 KB
/
RF00003.sto
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
# STOCKHOLM 1.0
#=GF ID U1
#=GF DE U1 spliceosomal RNA
#=GF AU Infernal 1.1.2
X06810.1/261-421 AUACUUACCUGGACGG.GGUCA.AUGG...AUGAUCAA.UAAG.GUCCA.UGGCCU-..AGG.GAAGUAACCUCCAUU.....GCACUU.AGGAGG.GGUGCUUU.........CCUA-AGGUCUGCCCAA-..GUGG..CAG-AGCCU.ACGUCAUAAUUUGUGGUAG..UGGGGG.-CUUGCGUU..CGCGCAGCCCCUUC
X14417.1/177-340 AUACUUACCUGGACGG.GGUCA.AUGG...GUAAUCAA.GAAG.UUCCA.UGGCCU-..AGG.UUGGUGACCUCCAUU.....GCACUA.AGGAGG.GGUGCUUG.........CCUA-AGGUCGACCCAA-..GUGG..UUG-AGCCU.ACGUCAUAAUUUGUUGUUGcaGAGGGG.GCCUGUGUU..CGCGCAGCCCCUAC
Z11883.1/3441-3603 UUACUG--GUGGGUGGcGGAGA.AGAGaucGUGACAUC.GUAG.ACCUA.UGGCUU-..AGA.UUGAUGACCUCCAUU.....GCACUU.UGGAGG.GGUGCCUG.........CCUAAAGUCUG-CCCAA-..GUGG..UCG-AGCCU.ACACUAUAAUUUGUGAUAG..-UGGGG.GCUUGCGUU..CGCGCAGCCCCUAG
X14419.1/178-338 AUACUUACCUGGACGG.GGUCA.AUGG...GCGAUCAU.GAAC.ACCCA.UGGCCU-..AGG.UUGGUGACCAUCAUU.....GCACUU.UGAAGG.GGUGCCCG.........CCUA-AGGUCGGCCCAA-..GUGG..UCG-AGCCU.ACGUCAUAAUUUGUUGCUG..-AGGGG.GCCUGCGUU..CGCGCGGCCCCUGC
X14416.1/171-331 AUACUUACCUGGACGG.GGUCU.AUGG...GCGAUCAU.GUAG.GUCCA.UGGCCU-..AGG.UUGGUGACUUUCAUU.....GCACUU.UGGAGG.GGUGCCCG.........CCUA-AGAUCAGCCCAA-..GAGG..UUG-AGUCU.ACAUCAUAAUUUGUUGCUG..-AGGGG.GCAUGCGUU..CGCGCAGCCCCUGC
X14415.1/175-335 UUACUUACCUGGACGG.GGUCA.AUUG...GCGAUCAU.GAAG.GUCCA.UGGCCU-..AGG.UUGGUAACCUCCAUU.....GCACUU.AGGAGA.GGUGCCUA.........CCUA-AGAUCGGCCCAA-..GUGG..CCG-AAUCU.ACGUCAUAAUUUGUUGCUG..-AGGGG.GCCUGCGUU..CGCGCGGCCCCUGC
X14414.1/152-312 AUACUUACCUGGACGG.GGUCA.AUAG...GCGAUCAA.UAAG.ACCCA.UGGCCU-..AGG.UUGGUGACCUCCAUU.....GCACUU.UGGAGG.GGUGCCAA.........UCUA-AGGUCGGCCCAA-..GUGG..UCG-AGCCU.ACGUCAUAAUUUGUUGCUG..UGAGGG.-CCUGUGUU..CGCGCGGCCCCUGC
Z11883.1/2839-2998 AUACUUACCUGGACGG.GGUUA.AUGG...GCGAUCAA.UAAG.ACCCA.UGGGCCU..AGG.UUGGUGACCUCCAUU.....GCACUU.UGGAGG.GGUGCCUA.........CCUA-AGGUCGGCUCAA-..GUAG..UCG-AGCCU.ACGUCAUAAUUUGUUGCAG..--UGGG.-CCUGCGUU..CGCGCGGCCCCUAC
Z11883.1/1496-1656 UUACUUACCUGGACGG.GGUCA.AUGG...GCAAUCAA.UAAG.ACCCA.UGGCCU-..AGG.UUGGUGACCUCCAUU.....GCACUU.UGGAGG.GGUGCCUU.........CCUA-AGGUCGACCCAA-..GUGG..UCG-AGCCU.AUGUCAUAAUUUGUUGCAG..-UGGGG.GCCAGCGUU..CGCGCGGCCCCUAC
Z11883.1/361-521 AUACUUACCUGGACGG.GGUCA.AUGG...ACGAUCAA.UAAG.ACCCA.UGGCCU-..AGG.UUGGUGACCUCCAUU.....GCACUU.UGGAGG.GGUGCCUG.........CCUA-AGGUCGGCCCAA-..GUGG..UCG-AGCCU.ACGUCAUAAUUUGUUGCAG..-UGGGG.GCCUGCGUU..CGCGCGGCCCCUAU
Z11882.1/353-512 AUACUUACCUGGACGG.GGUCA.AUGG...GCGAUCAA.UAAG.ACCCA.UGGCCU-..AGG.CUUGUGACCUCCAUU.....GCACUU.UGGAGG.GGUGCCUG.........CCUA-AGGUCGACCUAA-..GUGG..UCG-GGCCU.AUGUCAUAAUUUGUUGCUG..UGGGGG.-CCUGCGUU..C-UGCGCGCCCCUG
Z11881.1/1515-1675 AUACUUACCUGGACGG.GGUCA.AUGG...GCGAUCAA.UAAG.ACCUA.UGGCCU-..AGG.CUUGUGACCUCCAUU.....GCACUU.UGGAGG.GGUGCCUG.........CCUA-AGGUCGGCCCAA-..GUGG..UCG-AGCCU.ACGUCAUAAUUUGUUACAG..CGGGGG.-CCUGCGUU..CGCGCGGCCCUACC
Z11881.1/315-475 AUACUUACCUGGACGG.GGUCA.AUGG...GCGAUCAA.UAAG.ACCUA.UGGCCU-..AGG.CUUGUGACCUCCAUU.....GCACUU.UGGAGG.GGUGCCUG.........CCUA-AGGUCGACCCAA-..GUGG..UCG-AGCCU.ACGUCAUAAUUUGUUGCUG..UGGGGG.-CCUGCGUU..CGCGCGGCCCUGCC
Z11881.1/2581-2742 AUACUUACCUGGACGG.GGUCA.AUGG...GUGAUCAA.UAAG.ACCCAaUGACCC-..AGG.CUUGUGACCUACAUU.....GCACUU.UGGAGG.GGUGCCUG.........CCUA-AGGUCAGCCCAA-..GUGG..UUG-AGCCU.AUGUCAUAAUUUGUUGCAG..-UGGGU.GCCUGUGUU..UGCGCACGCCCUAC
K02430.1/690-853 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
X12936.1/575-738 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
V00590.1/1-162 --ACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M28012.1/108-271 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M28013.1/108-271 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
V00591.1/394-557 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M38483.1/1-164 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M14387.1/399-562 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
K00788.1/2-165 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
J00318.1/433-596 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
K00529.1/225-388 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUC..CGCGCUUUCCCCUG
J00645.1/51-213 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGUGUAUCCAUU.....GCA-UC.CGG-AU.GUGCUGAC.........CACUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..UGUGCUCUCCCCUU
M14585.1/106-268 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGCC.........CCUG-CGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M14586.1/106-268 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGCC.........CCUG-CGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M14587.1/106-268 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGCC.........CCUG-CGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M14385.1/106-268 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGCC.........CCUG-CGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M14386.1/106-268 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGCC.........CCUG-CGAUUUCCCCAAA.uGUGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M32270.1/371-535 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAU.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUCACCCAUU.....GCACUU.UGGGGU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
K03128.1/241-77 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAU.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUCACCCAUU.....GCACUU.UGGGGU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
Y00131.1/944-1108 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAU.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUCACCCAUU....uGCACUGuUGGGGU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.A-UGCA-AAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
V00444.1/1-162 --ACUUACCUGGCAGG.GGAGA.CACC...AUGAUCAG.GCAG.GUGGU.UUUCCCA..GGG.CGAGGCUCAUCCCCU.....GCACUC.CGG-GU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
X01093.1/329-492 AUACUUACCUGGCAGG.GGAGA.CACC...AUGAUCAG.GCAG.GUGGU.UUUCCCA..GGG.CGAGGCUCAUCCCCU.....GCACUC.CGG-GU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
J00914.1/146-309 AUACUUACCUGGCAGG.GGAGA.CACC...AUGAUCAG.GCAG.GUGGU.UUUCCCA..GGG.CGAGGCUCAUCCCCU.....GCACUC.CGG-GU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
X01091.1/442-605 AUACUUACCUGGCAGG.GGAGA.CACC...AUGAUCAG.GCAG.GUGGU.UUUCCCA..GGG.CGAGGCUCAUCCCCU.....GCACUC.CGG-GU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
X01092.1/374-537 AUACUUACCUGGCAGG.GGAGA.CACC...AUGAUCAG.GCAG.GUGGU.UUUCCCA..GGG.CGAGGCUCAUCCCCU.....GCACUC.CGG-GU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUCUCCCCUG
X00549.1/150-313 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAU.GAAG.GUGGU.UCUCCCA..GGG.CGAGGCUCAGCCAUU.....GCACUC.CGG-UU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUCUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
X02585.1/923-1086 AUACUUACCUGGCAGG.CGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UCUCCCA..GGG.CGAGGCUCAGCCAUU.....GCACUC.CGG-CU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAACUCG.ACUGCAUAAUUUCUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
X02585.1/1513-1676 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UCUCCCA..GGG.CGAGGCUCAGCCAUU.....GCACUC.CGG-CC.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGCGG..-GAAAGUCG.ACUGCAUAAUUUCUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
M32271.1/288-452 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUCACCCAUU.....GCACUU.UGGGGU.GUGCUGAC.........CCCUGCGAUUUCCCAAAU..GCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.AGCUGCGUU..CGCGCGCCCCCCUG
M59827.1/771-934 AUACUUACCUGGCAGG.GGAGC.AUCU...GUGAUCAG.CAAG.GCAGA.GCUCCCA..GGG.UGAGGCUCAUCCAUU.....GCACAU.CGGAUU.-UGCUGAC.........CCCUGCGAUGUCCCCAAA.uGCGG..-GAUUCUCG.ACUGUAUUAUUUCUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
V01266.1/1-168 --ACUUACCUGGCAGG.GAGAU.-ACC...AUGAUCAC.GAAG.GUGUU.UUCUCUCcaGGG.CGUGGUCUAUCCAUUgaggcGCACUC.CGU-GG.AUGCUGAC.........CCCUGCGAUUUCCUCCAAauGCGG..-GAAACUCG.ACUGCAUAAUUUGUGGUAG..UGCGGG.G-GACUGUU..CGCGCUC-CUCUCG
DQ058357.1/1-164 AUACUUAACUGGCAAG.GGAAA.UAAC...AUGAUCAUuAAAG.GUGGA.UUUUUCA..GGG.UGAGGUUUGUCUCUU.....GCAUUG.UGG-AU.GUGCUGAC.........CCCUGUGGUUUUCUACAAauGUGG..-GAAACUUA.AUUGCAUAAUUUGUGGUAG..UGGGGA.CU---AUGU..UGGUUCUCUCCCCU
M27880.1/1-161 AUACUUACCUGGCGCA.GGGGU.CGCA...UUGAUCAA.GAAG.GAUGC.ACCCCC-..AGG.GCGAGGCUUGCCAUU.....GCACUC.CGG-CU.-UGCUGAA.........CCUUGCGAUUCCCCCAAA.cGUGG..-GGAACUCG.GGCGUAUUAUUUAUGGUAG..CGGAGA.U-CUGCGUU..CGCGCUA-UCUCCU
X04994.1/620-781 AUACUUACCUGGCGCA.GGGGU.CGCA...UUGAUCAA.GAAG.GAUGC.ACCCCC-..AGG.GCGAGGCUUGCCAUU.....GCACUC.CGG-CU.-UGCUGAA.........CCUUGCGAUUCCCCCAAA.cGUGG..-GGAACUCG.GGCGUACAAUUUAUGAUAG..-CGGAG.AUCUGCGUU..CGCGCUAUCUCCUA
X01749.1/448-609 AUACUUACCUGGCGCA.GGGGU.CGCA...UUGAUCAA.GAAG.GAUGC.ACCCCC-..AGG.GCGAGGCUUGCCAUU.....GCACUC.CGG-CU.-UGCUGAA.........CCUUGCGAUUCCCCCAAA.cGUGG..-GGAACUCG.GGCGUACAAUUUAUGGUAG..-CGGAG.AUCUGCGUU..CGCGCUAUCUCCUA
X04993.1/647-808 AUACUUACCUGGCGCA.GGGGU.CGCA...UUGAUCAA.GAAG.GAUGC.ACCCCC-..AGG.GCGAGGCUUGCCAUU.....GCACUC.CGG-CU.-UGCUGAA.........CCUUGCGAUUCCCCCAAA.cGUGG..-GGAACUCG.GGCGUACAAUUUAUGGUAG..-CGGAG.AUCUGCGUU..CGCGCUAUCUCCUA
X56629.1/421-582 AUACUUACCUGGCGCA.GGGGU.CGCA...UUGAUCAA.GAAG.GAUGC.ACCCCC-..AGG.GCGAGGCUUGCCAUU.....GCACUC.CGG-CU.-UGCUGAA.........CCUUGCGAUUCCCCCAAA.cGUGG..-GGAACUCG.GGCGUAUUAUUUAUGGUAG..-CGGAG.AUCUGCGUU..CGCGCUAUCUCCUA
X75936.1/1034-1195 AUACUUACCUGGCGCA.GGGGU.AGCA...UUGAUCAA.GAAG.GAUGC.ACCCCC-..AGG.ACGAGGCUUGCUAUU.....GCACAC.CGG-CU.-CGCUGAA.........GCUUGCGAUUCCCUCAAA.cGUAG..-GGAACUCG.GGCGUAUUAUUUAUGGUAG..-CGGGG.AUCUGCGUU..CGCGCUAUCCCCUU
X53544.1/117-281 AUACUUACCUGGCGUA.GAGGUuAACC...GUGAUCAC.GAAG.GCGGU.UCCUCCG..GAG.UGAGGCUUGGCCAUU.....GCACCU.CGG-CU.GAGUUGAC.........CUCUGCGAUUAUUCCUAA.uGUGA..AUA-ACUCG.UGCGCGUAAUUUUUGGUAG..-CCGGG.AAUGGCGUU..CGCGCCGUCCCGAC
X53543.1/383-547 AUACUUACCUGGCGUA.GAGGUuAACC...GUGAUCAC.GAAG.GCGGU.UCCUCCG..GAG.UGAGGCUUGGCCAUU.....GCACCU.CGG-CU.GAGUUGAC.........CUCUGCGAUUAUUCCUAA.uGUGA..AUA-ACUCG.UGCGUGUAAUUUUUGGUAG..-CCGGG.AAUGGCGUU..CGCGCCGUCCCGAC
X53544.1/1653-1817 AUACUUACCUGGCGUA.GAGGUuAACC...GUGAUCAC.GAAG.GCGGU.UCCUCCG..GAG.UGAGGCUUGGCCAUU.....GCACCU.CGG-CU.GAGUUGAC.........CUCUGCGAUUAUUCCUAA.uGUGA..AUA-ACUCG.UGCGUGUAAUUUUUGGUAG..-CCGGG.AAUGGCGUU..CGCGCCGUCCCGAC
X01725.1/69-233 AUACUUACCUGGCGUA.GAGGUuAACC...GUGAUCAC.GAAG.GCGGU.UCCUCCG..GAG.UGAGGCUUGGCCAUU.....GCACCU.CGG-CU.GAGUUGAC.........CUCUGCGAUUAUUCCUAA.uGUGA..AUA-ACUCG.UGCGUGUAAUUUUUGUUAG..-CCGGG.AAUGGCGUU..CGCGCCGUCCCGAC
X53541.1/1195-1359 AUACUUACCUGGCGUA.GAGGUuAACC...GUGAUCAC.GAAG.GCGGU.UCCUCCG..GAG.UGAGGCUUGGCCAUU.....GCACCU.CGG-CU.GAGUUGAC.........CUCUGCGAUUAUUCCUAA.uGUGA..AUA-ACUCG.UGCGUGUAAUUUUUGUUAG..-CCGGG.AAUGGCGUU..CGCGCCGUCCCGAC
X53542.1/2592-2756 AUACUUACCUGGCGUA.GAGGUuAACC...GUGAUCAC.GAAG.GCGGU.UCCUCCG..GAG.UGAGGCUUGGCCAUU.....GCACCU.CGG-CU.GAGUUGAC.........CUCUGCGAUUAUUCCUAA.uGUGA..AUA-ACUCG.UGCGUGUAAUUUUUGUUAG..-CCGGG.AAUGGCGUU..CGCGCCGUCCCGAC
J01156.1/9-172 AUACUUACCUGGCGUA.GAGGUuAACC...GUGAUCAC.GAAG.GCGGU.UCCUCCG..GAG.UGAGGCUUGGCCAUU.....GCACCU.CGG-CU.GAGUUGAC.........CUCUGCGAUUAUUCCUAA.uGUGA..AUA-ACUCG.UGCGUGUAAUUUUUGGUAG..CCGGGA.A-UGGCGUU..CGCGCCG-UCCCGA
X04257.1/1-164 AUACUUACCUGGCGUA.GAGGUuAACC...GUGAUCAC.GAAG.GCGGU.UCCUCCG..GAG.UGAGGCUUGGCCAUU.....GCACCU.CGG-CU.GAGUUGAC.........CUCUGCGAUUAUUCCUAA.uGUGA..AUA-ACUCG.UGCGUGUAAUUUUUGGUAG..CCGGGA.A-UGGCGUU..CGCGCCG-UCCCGA
K00787.1/2-165 AUACUUACCUGGCGUA.GAGGUuAACC...GUGAUCAC.GAAG.GCGGU.UCCUCCG..GAG.UGAGGCUUGGCCAUU.....GCACCU.CGG-CU.GAGUUGAC.........CUCUGCGAUUAUUCCUAA.uGUGA..AUA-ACUCG.UGCGUGUAAUUUUUGGUAG..CCGGGA.A-UGGCGUU..CGCGCCG-UCCCGA
AJ243001.2/347-509 AUACUUACCUGGCACA.GGGGA.UACC...ACGAUCAC.CAAG.GUGGU.UCCCCC-..AAG.ACGAGGCUCACCAUU.....GCACUC.CGG-UG.GCGCUGAC........cCUUG-CAAUGACCCCAAA.uGUGG..GUU-ACUCG.GGUGUGUAAUUUCUGUUAG..CUGGGG.-ACUGCGUU..CGCGCUUUCCCCUU
AY198212.1/1-163 AUACUUACCUGGCACA.GGGGA.UACC...ACGAUCAC.CAAG.GUGGU.UCCCCC-..AAG.ACGAGGCUCACCAUU.....GCACUC.CGG-UG.GCGCUGAC........cCUUG-CGAUGACCCCAAA.uGUGG..GUU-ACUCG.GGUGUGUAAUUUCUGUUAG..CUGGGG.-ACUGCGUU..CGCGCUUUCCCCUU
AY198211.1/1-163 AUACUUACCUGGCACA.GGGGA.UACC...ACGAUCAC.CAAG.GUGGU.UCCCCC-..AAG.ACGAGGCUCACCAUU.....GCACUC.CGG-UG.GCGCUGAC........cCUUG-CGAGGACCCCAAA.uGUGG..GUU-ACUCG.GGUGUGUAAUUUCUGUUAG..CUGGGG.-ACUGCGUU..CGCGCUUUCCCCUU
AY198213.1/1-163 AUACUUACCUGGCACA.GGGAA.UACC...ACGAUCAC.UAAG.GUGGU.UCCCCCA..AGG.CGAGGCUCA-CCAUU.....GCACCU.CGG--UgGCGCUGAC.........CCUUGCGAUGACCCCAAA.uGUGG..GUU-ACUCG.GGUGUGUAAUUUCUGUUAG..CUGGGG.-ACUGCGUU..CGCGCUUUCCCCUU
AY198214.1/1-163 AUACUUACCUGGCACA.GGGGA.UACC...ACGAUCAC.UAAG.GUGGU.UCCCCCA..AGG.CGAGGCCCC-CCAUU.....GCACUU.CGG-UG.GUGUUGAC.........CCUUGCGAUGAUCCCAAA.uGUGG..AUU-ACUCG.GGUGUGUAAUUUUUGGUAG..CUGGGG.-ACUGCGUU..CGCGCUAUCCCCUU
M73768.1/361-517 AAACUUACCUGGCGCC.GGGUU.CAGG...GUGAUCAG.CAAG.GCUCC.GACCCCA..GGU.GGAGGCUCA-GCAUU.....GCACUC.CGC--U.GUGUUGAA.........GCCUGCGACGGACUCUAA..UCGG..GUUCGCUCG.GGUGCAUAGUUUUUGCCAG..UGGGGA.----GCCUU..CGGGC--GUCCCUU
L25919.1/1-159 AAACUUACCUGGCGCC.GGGUU.CAGG...GUGAUCAG.GAAU.GCUCU.GACCCCG..GGU.GGAGGCUCA-CCAUU.....GCACUU.CGG--U.GGGUUGAA.........ACUUGCGACGAACCCUAA..UUGG..GUGCGCUCG.GACGCGUAGUUUUUGUCAG..UGGGGA.---GGUCUU..CGGAUCA-UCCCUU
L25914.1/1-159 AAACUUACCUGGCGCC.GGGUU.CAGG...GUGAUCAG.GAAU.GCUCU.GACCCCG..GGU.GGAGGCUCA-CCAUU.....GCACUU.CGG--U.GGGUUGAA.........ACUCGCGACGAACCCUAA..UUGG..GCUCGCUCG.GACGCGUAGUUUUUGUCAG..UGGGGA.---GGUCUU..CGGAUCA-UCCCUU
L25921.1/1-159 AAACUUACCUGGCGCC.GGGUU.CAGG...GUGAUCAG.GAAU.GCUCU.GACCCCG..GGU.GGAGGCUCA-CCAUU.....GCACUU.CGG--U.GGGUUGAA.........ACUCGCGACGAACCCUAA..UUGG..GUGCGCUCG.GGCGUGUAGUUUUUGUCAG..UGGGGA.---GGUCUU..CGGAUCA-UCCCUU
L25916.1/1-159 AAACUUACCUGGCGCC.GGGUU.CAGG...GUGAUCAG.GAAU.GCUCU.GACCCCG..GGU.GGAGGCUCA-CCAUU.....GCACUU.CGG--U.GGGUUGAA.........ACUCGCGACGAACCCUAA..UUGG..GUGCGCUCG.GGCGUGUAGUUUUUGUCAG..UGGGGA.--GGUCUCA..C-AGUCA-UCCCUU
L25915.1/1-159 AAACUUACCUGGCGCC.GGGUU.CAGG...GUGAUCAG.GAAU.GCUCU.GACCCCG..GGU.GGAGGCUCA-CCAUU.....GCACUU.CGG--U.GGGUUGAA.........ACUCGCGACGAACCCUAA..UUGG..GUGCGCUCG.GGCGUGUAGUUUUUGUCAG..UGGGGA.--GGUCUCA..C-AGUCC-UCCCUU
L25917.1/1-158 AAACUUACUUGGCGCC.GGGAC.CAGG...GUGAUCAC.GAAU.GCCCU.GGCCCCA..GGU.GGAGGCUCG-CCAUU.....GCACUC.CGG--C.GUGUUGAA.........GCCUGCGACGAUCCCUAA..UUGG..GUGCGCUCG.GACGCGUAGUUUUUGUCAG..UGGGGA.---GGUCUU..CGGAUCA-UCCUU-
DQ092354.1/1778-1949 AUACUUACCUGACGGU.GAAGC.AAAC...CUGGUCAA.CAUG.GGGCU.UCUUCC-..AGGgUGAGGCUUUUGCAUU.....GCACUU.CGCCUG.G-GCUGACucuggguugACUG-CGAUUACCGCUAA.cGUCG..GUA-ACUCG.ACCGUACACUUUCUGGCUG..UGGGGG.-CCUGCGUU..GGCGCUCGCCCCUU
DQ058356.1/1-168 AUGUCUUCGUGGCGGG.GGAGA.GACGcugUUGGUCCU.GAUAaAGUGU.UUUUCUU.gGGG.GAGGGUUUUUACUUU.....GUGUUU.GGGAUG.UGUUUGCU.........CCCG-CGAUUUCCCCGA-..AUGA..GAAAACUCG.GCUGCAUAACUUGUGGUAG..UGGGGG.-ACUGCUUU..UGCGCUUUUCUGUC
L22246.1/3195-3356 AGACUUAUUUGGUUGG.GAGGA.UUUC...GUAAUCAG.-AAG.GCGGG.ACCUCCA..UGG.CGAGGCUUGGUCAUU.....GCACUUuCGA-CC.AGGCUGAC.........CAGUGUGGCAGACCCGAG..UUGGgaUUGG--CCA.ACAGCAUAAUUUUUGCGUU..-UGGGG.A-CAGCGUU..CGCGCUU-CCCCGC
L22246.1/2071-2235 AAACUAACCUGGCUGG.GGGGCaUCUC...GCGAUCAU.GAAG.GCGGG.ACCUCCA..UGG.UGAGGUCUGGUCAUU.....GCACUUcCGA-CC.AGGCUGAC.........CUGUGUGGCAGUCCCGAG..UUGGgaUUGG--CCA.ACAGCAUAAUUUUUGCGUU..--UGGG.GACAGCGUU..CGCGCUUCCCCGCC
L22246.1/5535-5699 AAACUAACCUGGCUGG.GAGGCaUCUC...GCGAUCAU.GAAG.GCGGG.ACCUCCA..UGG.CGAGGUUUGGCCAUU.....GCACUUuCGG-CC.AGGCUGAC.........CCGUGUGGCAGUCCCGAG..UUGGgaUUGG--CCA.ACAGCAUAAUUUUUGCGUU..--UGGG.GACAGCGUU..CGCGCUUCCCCGCC
L22246.1/4551-4714 AAACUUACCUGGCUGG.GAGGC.UUUC...GUGAUCAU.GAAG.GCGGA.ACCUCCA..UGG.UGAGGCUUGGUCAUU.....GCACUUuCGA-CC.AGGCUGAC.........CCGUGUGGCAGUCCCGAG..UUGGgaUUGG--CCA.ACAGCAUAAUUUUUGCGUU..--UGGG.GACAGCGUU..CGCGCUUCCCCGCC
X51371.1/181-345 AAACUUACCUGGCUGG.GGGUUaUUUC...GCGAUCAC.AAAG.GCGGA.AUCCCCA..UGG.UUAGGCCUACCCAUU.....GCACUUuUGGUGC.GGGCUGAC.........CUGUGUGGCAGUCUCGAG.uUGAG..AUU-CGCCA.ACAGCUUAAUUUUUGCGUA..UCGGGG.--CUGCGUG..CGCGCGG-CCCUGA
X70869.1/1-161 AUACUUACCUGGCCCG.CUUCU.CGAG...GUGGUCAC.CAUG.GCCUC.GGUUGU-..GUG.GUCGGUCUUCACCUU.....GCACUU.UGU-GA.GGGCCUUC.........CGCA-GUCGGCCCUUCG-..--GG..UGU-CCGGC.AGGGCUAAAUUUUUGUUAG..GCUGAGgACCCGCGCU.aUGCGCGGCCUCGGC
X06880.1/1-162 AUACUUACCUGUCCGG.CCUGC.GACC...UCGAGCAA.GAAG.GGGGU.CUAGGUA..GUG.CUUGUACCUCGCCUU.....GUACUA.UGCUUG.GGGUA--G.........CGCUGUGUGCGGGGCAA-..GUCC..-UCGUUACA.ACGGAAUAAUUUCUGGCAG..GCCGUU.GCACGCGCU..UGCGCGUCCUCGGC
M29062.1/238-387 UUACUUACCUGGCAUG.AGUUU.-CUG...CAGCACAA.GAAU.UGUGG.AGACUCA..GUU.AUUUGUCUUGGCAUU.....GCACUG.AGCCCU.G-ACGAAU.........AACUGUGGACUGGCUAA-..-GGU..CAG-CUCCG.GAUGCAUCAUUUUUGAGUU..CGU---.-CCCUCAUU..--UGGGGC-----A
X63783.1/596-756 UAAAUUACAAUGUUGU.AGUUA.GCUA...UAUAUCAA.AAAA.UAUAG.CAACUA-..AGG.-UGGAGCAAGUCAUU.....GUACUAaAGAUGU.UUGUAAUA.........CCUUG--AUGUUCCCGC-..-UGG..GAGCAAUA-.ACAACAAAAUUUCUGAUUG..GAAAUA.G-UCAUUAAacUAACUGGCUAUUUC
X63783.1/2024-2186 UUACUUACCUGGCUGG.AGUUU.GCUA...UCGAUCAU.GAAG.GGUAG.CGGCUU-..AGG.GUGGAGCAGGUCAUU.....GCACAAaAGAUGU.CUGUAAUA.........CCUUAUUGUUC-CCCGU-..GCGG..-GGAACCGAaACAGCACAAUUUCUGCUAG..GGGAGA.CGUGCACUU..A-GUGCUGUCUCCG
X58845.1/1-161 --ACUUACCUGGCUGG.AGUUU.GCUA...UCGAUCAU.GAAG.GGUAG.CGGCUU-..AGG.GUGGAGCAGGUCAUU.....GCACAAaAGAUGU.CUGUAAUA.........CCUUAUUGUUC-CCCGU-..GCGG..-GGAACCGAaACAGCACAAUUUCUGCUAG..GGGAGA.CGUGCACUU..A-GUGCUGUCUCCG
X63783.1/1394-1556 UUACUUACCUGGCUGG.AGUUA.GCUA...UCGAUCAU.GAAG.GGUAG.CGGCUU-..AGG.GUGGAGCAGGUCAUU.....GCACAAaAGAUGU.CUGUAAUA.........CCUUAUUGUUC-CCCGU-..GCGG..-GGAACCGAaACAGCACAAUUUCUGCUAG..GGGAGA.CGUGCACUU..A-GUGCUGUCUCCG
X13842.1/1-150 ------ACCUGGCCGG.GGGAA.GUCG...GUGAUCAA.GACG.GCCGA.GUCCCU-..AGU.UGGGGAACCUCUCCU.....GCACUU.GAGAGG.G-GCUCCU.........UCUA-UGAUUG-CCUUC-..--GG..GUA-ACUCA.ACGGCAUAAUUUGUGAUAG..CGUGGG.--GUGCGCU.uGUCGCGC-CCUGCA
X13841.1/396-551 AUACAUACCUGGCCGG.GGGAA.GUCG...GUGAUCAA.GACG.GCCGA.GUCCCU-..AGU.UGGGGUACCUCUCCU.....GCACUU.GAGAGG.G-GCCCCU.........UCUA-UGAUUG-CCUUC-..--GG..GUA-ACUCA.ACGGCAUAAUUUGUGAUAG..CGUGGG.--GUGCGCU.uGUCGCGC-CCUGCA
X69329.1/1-160 AUACUUACCUGGACGG.GGUCG.ACGG...GCGAUCAA.GAAG.GCCCG.UGGCU--..GGG.UCAAUGGCUCACAUU.....GCACUU.GGUGGGuG-CGUUGG.........CCCA-CCAUCUCCCCAA-..GUGG..-GAGAGUGG.ACGUCAUAAUUUGUGCUAG..-AGGGG.GUACGCGUU..CGCGCGGCCCCUGC
S72336.1/2-161 AUACUUACCUGGACGG.GGUCG.ACGG...GCGAUCAA.GAAG.GCCCG.UGGCU--..GGG.UCAAUGGCUCACAUU.....GCACUU.GGUGGGuG-CGUUGG.........CCCA-CCAUCUCCCCAA-..GUGG..-GAGAGUGG.ACGUCAUAAUUUGUGCUAG..-AGGGG.GUACGCGUU..CGCGCGGCCCCUGC
X69334.1/1-160 AUACUUACCUGGACGG.GGUCG.ACGA...GCGAUCAA.GAAG.GCUCG.UGGCCU-..GGG.UCAGUGGUCCACAUU.....GCACUU.GGU-GG.AUGCCUGG.........CCCA-CCAUCUCCCCAA-..GUGG..-GAGAGUGG.AUGUCAUAAUUUGUGGUAG..-AGGGG.GUACGCGUU..CGCGCGGCCCCUGC
X69333.1/1-157 ----UUACCUGGACGG.GGUCG.ACGA...GCGAUCAA.GAAG.GCUCG.UGGCCU-..AGG.UUAGUGGCCCACAUU.....GCACUU.GGUGGGuG-CGCUGG.........CCUA-UCAUCUCCCCAA-..GUGG..-GAGAGUGA.ACGUCAUAAUUUGUGGUAG..-AGGGG.GUACGCGUU..CGCGCGGCCCCUGC
X69328.1/1-158 --ACUUACCUGGACGG.GGUCG.ACGG...CCGAUCAA.GAAG.GGUCG.UGGCCU-..AGA.-UCAAUGGUCACAUU.....GCACCU.GGUGAG.CGCGUUGG.........CCUA-CCAUCUCCCCAA-..GUGG..-GAGAGUGG.ACGUCGUAAUUUGUGGUAG..-AGGGG.GUACGCGUU..CGCGCGGCCCCUAC
AY222070.1/1-157 AUACUUACCUGGACGG.GGUCG.UUGG...GUGAUCAU.GAAG.AUCCG.UGGCCUA..GCG.UGGUGGC---UUCCU.....GCACUU.GAGGU-.--GGCUAA.........CGCAAAGGU-CACCCCAA..GUGG..-GAGAUCCU.GCGUCAUUAUUUGUUGCCU..-UGGGG.GCCUGCGUU..CGCGCAGCCCCCAC
X15928.1/1-160 AUACUUACCUGGAUGG.GGUCA.AUGG...GUGAUCAU.GAAG.GCCCA.UGGCU--..AGG.CAAGUGACUUCCAUU.....GCACUU.AGGAGG.GGUGCUUG.........CCUA-AGGUCUACCCAA-..GUGG..UGG-AACCU.ACAUCAUAAUUUGUUGCUG..UGGGGG.-CCUGCGUU..CGCGCGGCCCUCUU
X15927.1/1-160 AUACUUACCUGGAUGG.GGUCA.AUGG...GUGAUCAA.GAAG.GCCCA.UGGCU--..AGG.CAAGUGACCUCCAUU.....GCACUU.AGGAGG.GGUGCUAG.........CCUA-AGGUCUACCCAA-..GUGG..UGG-AGCCU.ACAUCAUAAUUUGUUGCUG..UGGGGG.-CCUGUGUU..CGCGCGGCCCCCUC
X15926.1/1-161 AUACUUACCUGGAUGG.GGUCG.AUGG...GUGAUCAU.GAAG.GCCCA.UGGCU--..AGG.AUUGUGACCUCCAUU.....GCACUU.AGGAGG.GGUGCUUU.........CCUA-AGGUCUACCCAA-..GUGG..UGG-AGCCU.ACAUCAUAAUUUGUUGCCU..GAGGGG.GCCUGCGUU..CGCGCGGCCCCCAC
X06809.1/232-392 AUACUUACCUGGACGG.GGUCA.AUGG...AUGAUCAA.GAAG.GUCCA.UGGCCU-..AGG.GAAGUAACCUCCAUU.....GCACUG.AGGAGG.GGUGCCUU.........UCUA-AGGUCUGUCCAA-..GUGA..CAG-AGCCU.ACGUCAUAAUUUGUGGUAG..UGGGGG.-CCUGCGUU..CGCGCGGCCCCUUU
URS000032B6B6_9606/1-164 AUACUUACCUGGCAGG.GGAGA.UACC...AUGAUCAC.GAAG.GUGGU.UUUCCCA..GGG.CGAGGCUUAUCCAUU.....GCACUC.CGG-AU.GUGCUGAC.........CCCUGCGAUUUCCCCAAA.uGUGG..GAA-ACUCG.ACUGCAUAAUUUGUGGUAG..UGGGGG.-ACUGCGUU..CGCGCUUUCCCCUG
#=GR URS000032B6B6_9606/1-164 7B0Y_a_SS ............(((....(((...((....(............).))..)))......(((....(((.(((((................)).)).).)))............))).....(((((((......)))..))).)......)))..................(((((..(.((((......)))).)))))).
#=GC SS_cons :::::::::::((((<.<<<<<.-<<<...<<______.____.>>>>>.>>>>>><..<<<.-<-<<<-<<<<<___.....______._>>->>.>->>>-->.........>>>>,<<<<<<-<<____..__>>..->>->->>>.,))))--------------..-<<<<<.-<-<<<<__..__>>>>->>>>>>:
#=GC RF AUACUUACCUGGccgg.Gggga.aacg...gcGAUCAa.GAAG.gccgu.ucccCca..gGg.ugaggcuccccCAUU.....GCACUu.cGgagg.gugccgac.........cCcuGcGguuccCCCaAA..GUGG..ugaaaccCg.AcggCAUAAUUUgUGgUAG..ucgGGG.gaccGcgUU..cGcgCguuCCCcgc
//