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RF00008.sto
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# STOCKHOLM 1.0
#=GF AU Infernal 1.1.2
D00685.1/1-46 ....--------.GCCAGACGU-GGACCCGGCCUGAUGAGUCCGAAA........................----GGACGAAACAGUA-.........
AJ247116.1/133-53 ....-UCCAGUC.GAGACCUGAAGUGGGUUUACUGAUGAGGCUGUGGagagagcgaaa.gcuuuacucccaCACAAGCCGAAACUGGA-.........
Y14700.1/133-53 ....-UCCAGUC.GAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGagagagcgaaa.gcuuuacucccaCACAAGCCGAAACUGGA-.........
AJ247123.1/132-52 ....-UCCAGUC.GAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGagagagcgaaa.gcuuuacucccgCACAAGCCGAAACUGGA-.........
AJ247121.1/133-53 ....-UCCAGUC.GAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGagagagcuuuc.gcuuuacucccgCACAAGCCGAAACUGGA-.........
AJ247122.1/132-52 ....-UCCAGUC.GAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGagagagcuauu.gcuuuacucccgCACAAGCCGAAACUGGA-.........
AJ247113.1/134-53 ....-UCCAGUC.GAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGagagagcaaauugcuuuacucccgCACAAGCCGAAACUGGA-.........
AJ536620.1/1-40 ....--------.GGGUGGUGUGUG-CCACCCCUGAUGAGUCCGA--........................--AAGGACGAA-------.........
AJ536617.1/1-40 ....--------.GGGUGGUGUGUA-CCACCCCUGAUGAGUCCGA--........................--AAGGACGAA-------.........
Y12833.1/339-285 ....CCGCUAUA.UGGGGAUGUGUG-UCCCUACUGACGAGUUCAA--........................--AAGAACGAAAUAGUUA.........
J02386.1/42-95 ....UGUCCGUA.-GUGGAUGUGUA-UCCACUCUGAUGAGUCCAA--........................--AAGGACGAAACGGAUG.........
J02439.1/42-95 ....UGUCCGUA.-GUGGAUGUGUA-UCCACUCUGAUGAGUCCGA--........................--AAGGACGAAACGGAUG.........
M63666.1/246-192 ....CCGGUGUC.UCAAGGUGCGUA-CCUUGACUGAUGAGUCCGA--........................--AAGGACGAAACACCAG.........
M33000.1/55-110 ....ACGCUGUC.UGUACUUGUAUC-AGUACACUGACGAGUCCCU--........................-AAAGGACGAAACAGCGC.........
M33001.1/56-111 ....ACGCUGUC.UGUACUUAUAUC-AGUACACUGACGAGUCCCU--........................-AAAGGACGAAACAGCGC.........
AJ550909.1/282-333 ....GAAGAGUC.-GCGCUU------AGCGCACUGAUGAGUCUCUGA........................-AUGAGACGAAACUCUUC.........
AJ550907.1/281-333 ....AAAGAGUC.-GCGCUU------AGCGCACUGAUGAGUCUCUGA........................GAUGAGACGAAACUCUUC.........
AJ550908.1/281-334 ....GAAGAGUC.UGCGCUU------AGCGCACUCAUGAGUCUCUGA........................GAUGAGACGAAACUCUUC.........
AJ550910.1/282-336 ....GAAGAGUCcUGCGCUU------AGCGCACUGACGAGUCUCUGA........................GAUGAGACGAAACUCUUC.........
AJ550901.1/282-334 ....GAAGAGUC.-GCGCUA------AGCGCACUGAUGAGUCUUUGA........................GAUAAGACGAAACUCUUC.........
AJ550898.1/282-335 ....GAAGAGUC.UGCGCUA------AGCGCACUGAUGAGUCUUUGA........................AAUAAGACGAAACUCUUC.........
AJ241850.1/282-334 ....UAAGAGUC.-GUGCUA------AGCACACUGAUGAGUCUCUGA........................AAAGAGACGAAACUCUUU.........
AJ005294.1/282-334 ....UAAGAGUC.-GUGCUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCUUG.........
AJ005321.1/281-333 ....GAAGAGUC.-GUGCUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCUUG.........
AJ241830.1/282-334 ....AAAGAGUC.-GUGCUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCUUG.........
AJ005320.1/281-333 ....GAAGAGUC.-GUGCUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCUUU.........
AJ241833.1/282-334 ....AAAGAGUC.-GUGCUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCUUU.........
AJ550903.1/281-333 ....GAAGAGUC.-GUGCUU------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCUUU.........
AF170516.1/283-335 ....GAAGAGUC.-GUGCUU------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCUUC.........
AJ550906.1/282-334 ....GAAGAGUC.-GUGCUU------AGCACACUGAUGAGUCUCUGA........................GAUGAGACGAAACUCUUC.........
AJ005299.1/282-335 ....UAAGAGUC.UGUGCUA------AGCACACUGAUGAAUCUCUGA........................AAUGAGACGAAACUCUUG.........
AJ005300.1/282-335 ....UAAGAGUC.UGUGGUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCUUG.........
AJ241847.1/281-334 ....GAAGAGUC.UGUGCUA------AGCACACUGAUGAGUUUCUGA........................AAUGAGACGAAACUCUUG.........
AJ241831.1/281-334 ....GAAGAGUC.UGUGCUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCUUA.........
AJ005302.1/281-334 ....AAAGAGUC.UGUGCUA------AGCACACUGAUGAGUCUCUGA........................AUUGAGACGAAACUCUUG.........
AJ241823.1/282-335 ....AAAGAGUC.UGUGCUA------AGCACACUGAUGAGUCUCUAA........................AAUGAGACGAAACUCUUU.........
AJ005322.1/281-334 ....GAAGAGUC.UGUGCUA------AGCACACUGACGAGUCUCUGA........................AAUGAGACGAAACUCUUU.........
AJ005314.1/281-334 ....AAAGAGUC.UGUGCUA------AGCACACUGACGAGUCUCUGA........................AAUGAGACGAAACUCUUU.........
M83545.1/282-335 ....GAAGAGUC.UGUGCUA------AGCACACUGACGAGUCUCUGA........................GAUGAGACGAAACUCUUC.........
AJ550911.1/282-335 ....GAAGAGUC.UGUGCUA------AGCACACUGACGAGUCUCUGA........................AAUGAGACGAAACUCUUC.........
AJ241839.1/282-334 ....GAUGAGUC.-GUGCUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCAUA.........
AJ005312.1/282-335 ....GAUGAGUC.UGUGCUA------AGCACACUGAUGAGUCUAUGA........................AAUGAGACGAAACUCAUA.........
AJ241845.1/282-335 ....GAUGAGUC.UGUGCUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUCAUG.........
AF170504.1/284-337 ....GAUAAGUC.UGUGCUA------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUUAUC.........
AF170520.1/282-335 ....GAUAAGUC.UGUGCUU------AGCACACUGAUGAGUCUCUGA........................AAUGAGACGAAACUUAUC.........
AF170503.1/280-333 ....GAAAGGUC.UGUGCUU------AGCACACUGACGAGUUCCUGA........................AAUGGAACGAAACCUUUU.........
AF170503.1/55-3 ....CAUAAGUC.UGGGCUU------AG-CCACUGACGAGUCGCUGG........................GAUACGGCGAAACUUAUG.........
AJ005305.1/56-3 ....CAAAAGUC.UGGGCUA------AGCCCACUGACGAGCCGCUGG........................GAUACGGCGAAACUUUUG.........
AF170519.1/55-3 ....CAUAAGUC.UGGGCUU------AG-CCACUGAUGAGCCGUUGA........................GAUACGGCGAAACUUAUG.........
AF170523.1/55-3 ....CAAAAGUC.UGGGCUU------AG-CCACUGAUGAGCCGUUGA........................GAUACGGCGAAACUUUUG.........
AF339740.1/56-3 ....CAUAAGUC.UGGGCUU------AGCCCACUGAUGAGCCGUUGA........................GAUACGGCGGAACUUAUG.........
AF170509.1/56-3 ....CAUAAGUC.UAGGCUU------AGCCCACUGAUGAGCCGUUGA........................GAUACGGCGAAACUUAUG.........
AF339739.1/56-3 ....CAUAAGUC.UGGGCUU------AGCCCACUGAUGAGGCGUUGA........................GAUACGGCGAAACUUAUG.........
AJ005318.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGUUGA........................GAUACGGUGAAACUUAUG.........
AJ005319.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGUUGA........................GAUACGGCGAAACUUAUG.........
AJ241828.1/56-3 ....CAUAAGUC.UGGGUUA------AGCCCACUGAUGAGCCGUUGA........................GAUACGGCGAAACUUAUG.........
AJ005322.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGACGAGCCGUUGA........................GAUACGGCGAAACUUAUG.........
AJ241831.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGUUGA........................GAUACGGCGAAACUUCUG.........
AJ005298.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGUUGA........................GAUACGGCGAAACUUUUG.........
AJ241819.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGUUGA........................AAUACGGCGAAACUUUUG.........
AJ005303.1/56-3 ....CAAAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGUUGA........................GAUACGGCGAAACUUUUG.........
AJ550900.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGAUGAGCCUUUGC........................GACAAGGCGAAACUUAUG.........
AJ550899.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGAUGAGCCUUUGC........................GAUAAGGCGAAACUUAUG.........
AJ241838.1/56-3 ....CAAAAGUC.UGGGCUA------AGCCCACUGAUGAGCUGCUGA........................AAUGCGGCAAAACUUUUG.........
AJ005312.1/56-3 ....CAAAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGCUGA........................AAUGCGGCUAAACUUUUG.........
AF170499.1/56-3 ....CAAAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGCUGA........................AAUGCGGCGAAACUUUUG.........
AJ005310.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGCUGA........................AAUGCGGCGAAACUUUUG.........
AJ241840.1/56-3 ....CAGAAGUC.UGGGCUA------AGCCCACUGAUGAGCCGCUGA........................AAUGCGGCGAAACUUUUG.........
AJ241841.1/57-3 ....CAAAAGUU.UGGGCUAA-----AGCCCACUGAUGAGCCGCUGA........................AAUGCGGCGAAACUUUUG.........
AJ241843.1/56-3 ....CAUAAGUC.UGGGCUU------AGCCCACUGAUGAGCCACUGA........................AAUGCGGCGAAACUUUUG.........
AJ550912.1/56-3 ....CAAAAGUC.UGGGCUA------AGCCCACUGAUGAGUUGCUGA........................GAUGCGACGAAACUUUUG.........
AJ550911.1/56-3 ....CAAAAGUC.UGGGCUA------AGCCCACUGAUGAGUUGCUGA........................AACGCAACGAAACUUUUG.........
AJ550907.1/56-3 ....CAUAAGUC.UGGGCUU------AGCCUACUGAUGAGUCGCUGC........................GAUGCGACGAAACUUAUG.........
AJ550906.1/56-3 ....CAUAAGUC.UGGGCUU------AGCCCACUGAUGAGUCGCUGC........................GAUGCGACGAAACUUAUG.........
AJ550909.1/56-3 ....CAUAAGUC.UGGGCUU------AGCCCACUGAUGAGUUGCUGC........................GAUGCAACGAAACUUAUG.........
M83545.1/56-3 ....CAUAAGUC.UGGGCUA------AGCCCACUGAUGAGUCGCUGA........................AAUGCGACGAAACUUAUG.........
AJ536615.1/1-44 ....--------.GGGUGGUG-UGUACCAUCCCUGAUGAGUCCAA--........................--AAGGACGAAAUGG---.........
M17439.1/1-48 ....--------.ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU--........................--GAGGACGAAACAGGAC.........
AJ536614.1/206-152 ....UCACCGUC.GGAAAGUG-UGCGCUUUCCCUGAUGAGCCCAA--........................--AAGGGCGAAACGGUAC.........
AJ536612.1/206-152 ....UCACCGUC.GGAAAGUG-UGCGCUUUCCCUGAUGAGCCCGA--........................--AAGGGCGAAACGGUAC.........
AJ536620.1/206-152 ....CCACCGUC.GGAAAGUG-UGCGCUUUCCCUGAUGAGCCCAA--........................--AAGGGCGAAACGGUAC.........
AJ536619.1/206-152 ....CCACCGUC.GGAAAGUG-UGUACUUUCCCUGAUGAGUCCGA--........................--AAGGACGAAACGGUAC.........
URS000080DE02_32630/1-69 gggaGCCCUGUC.ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU--........................--GAGGACAAAACAGGGCucccgaauu
URS000080E0C8_32630/1-12 gggaGCCCUGUC.----------------------------------........................------------------.........
URS000080DFDA_32630/1-57 ....--------.ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAggacaaaac.....agggcucccgAAUU--------------.........
URS0000868531_32630/1-48 ....--------.-GGGUAC---UUAAGCCCACUGAUGAGUCGCUGG........................GAUGCGACGAAACGCCCA.........
URS000080DE02_31504/1-69 gggaGCCCUGUC.ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAggacaaaacag.ggcucccgaauu------------------.........
#=GR URS000080DE02_31504 2QUS_A_SS .((((((((((..((((((.....{.))))))(....).((((...}))))...)))).)))))).................................
URS000080DE02_31504/1-69 gggaGCCCUGUC.ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAggacaaaacag.ggcucccgaauu------------------.........
#=GR URS000080DE02_31504 2QUS_B_SS .((((((((((..((((((.....{.))))))(....).((((...}))))...)))).)))))).................................
URS000080DFDA_31504/1-57 ....--------.ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAggacaaaacag.ggcucccgaauu------------------.........
#=GR URS000080DFDA_31504 2QUW_B_SS .............((((((.....{.))))))(....).((((...}))))...............................................
URS000080DFDA_31504/1-57 ....--------.ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAggacaaaacag.ggcucccgaauu------------------.........
#=GR URS000080DFDA_31504 2QUW_D_SS .............((((((.....{.))))))(....).((((...}))))...............................................
URS0000868531_32630/1-48 ....--------.-GGGUAC---UUAAGCCCACUGAUGAGUCGCUGG........................GAUGCGACGAAACGCCCA.........
#=GR URS0000868531_32630 5DI2_A_SS ................................(....).(((((..............................)))))...................
URS0000868531_32630/1-48 ....--------.-GGGUAC---UUAAGCCCACUGAUGAGUCGCUGG........................GAUGCGACGAAACGCCCA.........
#=GR URS0000868531_32630 5DI4_A_SS ................................(....).(((((..............................)))))...................
URS0000868531_32630/1-48 ....--------.-GGGUAC---UUAAGCCCACUGAUGAGUCGCUGG........................GAUGCGACGAAACGCCCA.........
#=GR URS0000868531_32630 5DQK_A_SS ................................(....).(((((..............................)))))...................
URS0000868531_32630/1-48 ....--------.-GGGUAC---UUAAGCCCACUGAUGAGUCGCUGG........................GAUGCGACGAAACGCCCA.........
#=GR URS0000868531_32630 5EAO_A_SS ................................(....).(((((..............................)))))...................
URS0000868531_32630/1-48 ....--------.-GGGUAC---UUAAGCCCACUGAUGAGUCGCUGG........................GAUGCGACGAAACGCCCA.........
#=GR URS0000868531_32630 5EAQ_A_SS ................................(....).(((((..............................)))))...................
#=GC SS_cons ....(((((((,.<<<<<_________>>>>><____>,<<<<____........................____>>>>,,,))))))).........
#=GC RF ....caccaGUC.ggcGcaUGUgcUuagCgccCUGAUGAGuCcgUGA........................aAuAgGaCGAAACuggug.........
//