-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathRF00013.sto
160 lines (159 loc) · 46.2 KB
/
RF00013.sto
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
# STOCKHOLM 1.0
#=GF ID 6S
#=GF DE 6S / SsrS RNA
#=GF AU Infernal 1.1.2
CR543861.1/1111804-1111620 UUGUCUCUGGG.AUGCUCGCCAGCGAGUCAGAa....u-CCCCUGAGCCGAUACUAUCACUUUA-....GGAUAGCGUUCUG...CAUAU.UUAGAGU.GU.AUGCCUAC...............CCAGA.........-GUAGGAA...AC...CCAGCAAGU.AUG..CGUCGCU.-UCCACCUUG.....AAC.....UUAA.gGGU..UCAAG..GG--.....UAAUGACAGGCAGCGGCAU..cUUCGGAGGCAUU
AB036820.1/118-302 GAGAUUAUGUA.CUCCACUCCGAUUACCUA--......GUUU-UGA-CCGAACAUUUUUUUAUAC....GGGAGCUUGCCCU..uUCCUU.UCUGCAU.AA.AUGCCCUC...............A-UUA.........-GAGGCAC...UU...AUAAAGUCA.GGA..AGAAAGC.ACCCACCUGC....cAUG....gUGCG.gGGU..UCA-A..AAC-.....GAAGGAAAGGA-GGGGAAGaaaUAAGAAAGAUAU
AL591979.1/136531-136336 GAAACCCUAAU.GUAUUCGAUAUAGUUCCUGAu....aUUUU-UGAACCGAACAAUUUUUUAUACc.uaGGGAGCUUGGAGU..uCCGGC.GCGGCGC.AC.AUGCCUU-...............CACAC.........--GAGGAA...GU...GCAAACCGU.UAG..ACAGAGC.ACCCACCUGCuuuaa---uugagAGCG..GGU..UCAAA..GGA-.....AGGGAAUCCUAAACGGUAC..gAUUGGGGUUUCU
BX842646.1/183093-182914 AGAAGGGUUCG.ACGGCGUAAAGCUCUAUCGA......-AAA-UAAACCUUACAAGCAUAUUUUU....GGGGACUGUCCC-...UGACA.AUGGUGA.GC.AAGCUCAG...............CUCGU.........ACUGAGAA...GC...CUAAAGUUG.UUA..UCAUGGUuACCCACCUUAg...cUAA.....AACA..GGU..UUACU..UUUU.....-------CAGAGUGGUCUU...CGAGCCUUUUUU
AE017355.1/1531701-1531884 AAAUUCCUACG.GUGUACGU-AGCUUAUGCAU......GUCU-UAAACCAAUAAGUUUAAUAU--....GGAAGUUCAAUAU..uUAAAU.GUAGCUA.AC.AUGCCAUC...............UUUUU........aAGAAGGAA...GU...UACAAACAU.UUG..UGAGAGC.AUCCACCUGU.....GAG.....AGCA..GGU..UUAUG..GAC-.....AUCUAGAGAGA-ACGGCAU..aUGUGGGGCUAUA
AE017355.1/1531497-1531679 CACAUCCUGCG.GUGUACGUAACUUAUUUAU-......GUCU-AAAACCGAUGUUAGUUAUAC--....GGAAGCUCAAUAUu.uAGUGA.CCAUC-A.UC.AAGCCUUC...............CUUGU.........-GGAGGAA...GA...UGUACGGUA.ACU.gUGAGGGC.AUCCACCUGC....gAGU.....AGCG..GGU..UUUUG..GAC-.....AUUUACGAGGA-GCGGCAC..gUGCGGGG-GUCU
BX640434.1/259466-259282 UUGUCCCUGCC.GUGCUCGUGACUUGGCCAUAc....aUUCUCUGAACCUAUGUCUUACGGCAUAu..gGGUUGCGGGAGU-...GUAGA.GCUGG-A.GU.GA-UCGUCu.............aCUCGU.........AGACGA--...AC...CCGAUGCUC.UUC..GGAUCGC.GACCACCUUG.....AAC.....CUCA.gGGU..UCG-A..GAU-.....G-CCGGCC-UUGACGGCAC..aGGCGGGGCAUC-
CR522870.1/3243294-3243122 AUUCCCCUGUG.CUGUUGGUGAUUGCUAAAGU......GU-GUUGAGCCAACUCUCAAUAAAA--....GGGCGUUGUCUCU...UGUCA.GU-----.AA.AGGUGAA-...............UCGGU.........--GACGAA...UUg.gCUGA-GCUG.AUA..AUAUGAU.GCCCACCUAU.....UAA.....UUUA..GGU..UUAAC..UAUC.....--UUAGCGAC--ACGGCAG...UGUGGGGGAUUU
U62615.1/1314-1495 AUCUGGCUGCG.ACGUUGGUGACUGCCAACAAu....gUUUUUUGAUCUAUACCUUUCGAAGUU-....GGGCGCUCUCGCA..gAGCCG.ACGGC-A.GU.AGACCGAG...............CUUGA.........-CUCGGAA...AC...UUAAUGUUG.GCC..-GCAAGC.UCCCCCCUGG.....UUC.....UCCC..AGG..UCG-A..AAU-.....--CUGAGGUAAAACGGCGU...CGCGGUUAGAUC
AE017334.2/1507514-1507697 AAAUUCCUACG.GUGUACGU-AGCAUAUGCAU......GUCU-UAAACCAAUAAGUUUAAUAU--....GGAAGUUCAAUAU..uUAAAU.GUAGCUA.AC.AUGCCAUC...............UUUUU........aAGAAGGAA...GU...UACAAACAU.UUG..UGAGAGC.AUCCACCUGU.....GAG.....AGCA..GGU..UUAUG..GAC-.....AUCUAGAGAGA-ACGGCAU..aUGUGGGGCUAUA
AL596168.1/332986-332791 GAAACCCUAAU.GUAUUCGAUAUAGUUCCUGAu....aUUUU-UGAACCGAACAAUUUUUUAUACc.uaGGGAGCUUGGAGU..uCCGGC.GCGGCGC.AC.AUGCCUU-...............CACAC.........--GAGGAA...GU...GCAAACCGU.UAG..ACAGAGC.ACCCACCUGCuuuaa---uugagAGCG..GGU..UCAAA..GGA-.....AGGGAAUCCUAAACGGUAC..gAUUGGGGUUUCU
BX571857.1/1685846-1685657 AGUCAUCUGAG.UUGUUCGUAAGUUUGCUUUU......UAAUUUGGGCCUAACACUCUUUGAUCA...aGGGAGCCCAAUGGguuUUCUU.GCAGCGU.AC.ACGCCUU-...............AUAUG.........--AAGGAC...GU...ACAAAACAA.GAA..ACAGGGC.ACCCACCUGU....aUAU.....AACA..GG-..CCGAA..UGAUca.agCUAUUAUAACU-ACGGCAA...UACGGACUCUA-
AF029321.1/2323-2482 GGGGGUCUGCG.UUGUUCGU--GUAGGUUGAAa...guGCCUCGAGCCCGAUUUUGUUCUUAUA-....GGGAGCCGUCAC-...UGGUA.AC-----.--.---CU---...............CGAGU.........----AG--...--...-----GUUA.UUA..-CACGGC.GCCCACCUUAgc.uu--Ua..guCUCA..GGA..CACUA..AGC-.....----AAAGCGUUACGGCAA..aUGCGGAUCUCCU
M12965.1/109-292 AUUUCUCUGAG.AUGUUCGCAAGCGGGCCAG-......UCCCCUGAGCCGAUAUUUCAUACCACA...aGAAUGUGGCGCUC...CGCGG.UUGGUGA.GC.AUGCUCGG...............UCCGU.........-CCGAGAA...GC...CUUAAAACU.GCG..ACGACAC.AUUCACCUUG.....AAC.....CAAG..GGU..UCAAG..GGU-.....UACAGCCUGCG-GCGGCAU...CUCGGAGAUUCC
CR378673.1/72541-72721 UUGACCCUAGG.GUGUACGUCAGUGUGUCAAC......GUCCCCGAGCCGAUAAGCAAAUAACCC....GGAUCAGCUUUU-...AUUAG.CUAUUGU.GC.AAGCUCAG...............CUCGA.........-CUGAGAA...GC...C-UGCGGCU.AAU..GUUGCUG.AACCACCUUG.....AAC.....AUCU..GGU..UCAAG..GGC-.....CUAGAUGCGCA-ACGGCAC...CUUGGGG-CAUA
BX569692.1/257432-257250 CCUGAACUGCU.GUGUUGGUGACGGCCUUUUCu...agUGCUCUGAUCUGACUCUCUUUCGACUU....GGGGAGACUGUC-...GUGAC.GGUGC-C.GU.AAACCGGC...............CCUGU.........AGCCGGAA...AC...--GAAUCCC.CAC..UUUGUUU.CCCCUUCUGG.....UUC.....UUCC..AGG..UCG-A..CCAC.....--UGGGGCUCGCACGGCAC...GGUGGUUCACCC
AE017197.1/941600-941442 UCUUGGCUGCU.UGGUGCGUGAGCUUAAUAUUa....aCCU--AGGACUACCACUAACUUUUA--....GGACAUCAUCUCU...GUCUA.ACA----.--.---CU---...............AAUUC.........----AG--...--...-----UUUA.GAU..AUAUGAA.GUCCACCUUU.....ACA.....UCAA..GGU..CUUUG.aA---.....GGAUUUUAAGUAACGGCCA..aAGCGGUCAUGUA
BX571871.1/85682-85868 AUUUCUCUGAG.AUGUUCGUUAACGGGGAAAG......UCCCCUGAGCCGAUAUUUCAUACAUUAu..aGAAUGUGGUGCUC...CGUAGuCUGGUGU.GC.AUGCUCGG...............UCCAG.........-CCGAGAA...GC...CUUAAAGCU.GCG..ACGCUGC.GUUCACCUUG.....AAC.....CGAG..GGU..UCAAG..GGU-.....UACUACCUGUA-ACGGCAU...CUUGGAGAAUCU
X01238.1/1-184 AUUUCUCUGAG.AUGUUCGCAAGCGGGCCAG-......UCCCCUGAGCCGAUAUUUCAUACCACA...aGAAUGUGGCGCUC...CGCGG.UUGGUGA.GC.AUGCUCGG...............UCCGU.........-CCGAGAA...GC...CUUAAAACU.GCG..ACGACAC.AUUCACCUUG.....AAC.....CAAG..GGU..UCAAG..GGU-.....UACAGCCUGCG-GCGGCAU...CUCGGAGAUUCC
BX897700.1/1339934-1340092 GGUGUUCUGCG.CUUCUCGACAGGAAAUAACAu....aUCCUGAGA-CCUUAGUGAUCUCCAA--....GGGAGCUGUCCCU...GAUCA.AG-----.--.---CC---...............CGUG-.........----GG--...--...-----CUUU.UUC..AUAUGGC.GCCCACCUAU.....UUU.....-GUA..GGU..UCCCG..GGAU.....CAACUUUUUCCAUCGGUCG..uUGUGGAUCACCA
BX572607.1/143813-143653 GCGAAGCUGCG.GGACGCGUCAGGAGCCAUAU.....aUCCCCGGGGCCUUAUCGAUCCUUUC--....GGGAACUGUCCCU...-GG--.-------.--.---CCGGG...............UCCGUg.......gACCCGG--...--...---------.UC-..AUAUGGU.GCCCACCUAC.....UUU.....CGUA.gGGA.aCUCCG..GGAU.....CGAGUGCUUCA-ACGGUCA..cCGUGGCCUCGCA
BX897699.1/1644926-1645087 GGUGUUCUGCG.CCUCUCGACAGGAAAUAACAu....aUUCCUGAGACCUUAGUGAUUUCCAA--....GGGAGCUGUCCCU...GAUUA.AG-----.--.--------...............CUCGUg.......g-----G--...--...-----CUUU.UUC..AUAUGGC.GCCCACCUAU.....UUA.....UAUA..GGU.uCCCAG..GGAU.....CAACUUUUUCCAUCGGUUG..uUGUGGAUCACCA
AF316874.1/3084-3280 UACAAGCUGCA.UUGUUCGU--AUCAUUAUUA.....aGUUU-UAA-CCUUUAAGCUGUAAAA--....GGGAGUUUUAUGA..uUGAAA.CUGAAAU.GGcAAGCCUCGuuc.........uuu-----uaauuaacaACGAGGACa.gAC...AGGCAAGUU.UCU..-GCGAAC.ACCCACUUUG.....AGG.....AGUGguGGU..UUA-A..GACU.....UUCUAGAGACGUACGGCAG..aGGCGGCUGAUAC
BX640420.1/116264-116080 UUGUCCCUGCC.GUGCUCGUGACUUGGCCAUAc....aUUCUCUGAACCUAUGUCUUACGGCAUAu..gGGUUGCGGGAGU-...GUAGA.GUUGG-A.GU.GA-UCGUCu.............aCUCGU.........AGACGA--...AC...CCGAUGCUC.UUC..GGAUCGC.GACCACCUUG.....AAC.....CUCA.gGGU..UCG-A..GAU-.....G-CCGGCC-UUGACGGCAC..aGGCGGGGCAUC-
BX950851.1/526655-526839 AUUUCUCUGAG.AUGUUUGUCAGCGGGCCAG-......UCCCCUGAGCCGAUAUUUUAUACCAAAc..aGAAUGUAAUGCUC...UGCGG.UUGGUGC.GC.AAGCUCGG...............UUCGU.........-CCGAGAA...GC...CUUAAGACU.GCG..ACGUUAU.GUUCACCUUG.....AAC.....CAAG..GGU..UCAAG..GGU-.....UACAGCCUGCG-GCGGCAU...CUCGGAGAUCCC
AJ235273.1/69980-69822 UCUUGGCUGCU.UGGUGCGUGAGCUUAAUAUUa....aCCU--AGGACUACCACUAACUUUUA--....GGACAUCGUCUCU...GUCUA.AUA----.--.---CU---...............CAUUC.........----AG--...--...-----UUUA.GAU..AUAUGAA.GUCCACCUUU.....ACA.....UCAA..GGU..CUUUG.aA---.....GGAUUUUAAGUAACGGCCA..aAGCGGUCAUGUA
AP009389.1/1081845-1082030 AAUACCCUGCU.GUGUGCGUGAUCAGCCUUGA.....aGUUU-UGAGCCAACACCAUUAGAAA--....GGGAGCCCGGACU..cUGAAU.GUGGCUU.GU.AUGCCUCU...............CAUGC.........-AGAGGAA...AC...AAAAAGCAU.UCA..GGAGGGC.ACCCACCUGU....uGAG.....AGCA..GGU..UCAAA.aAAC-.....UUUUGGGGAUC-ACGGCAU..gAGUGGGGUUUUU
AP008232.1/3464584-3464767 AUUUCUCUGAG.GUGUUCGCCAGCGGGUCAGU......-CCCUUGAGCCGAUAUUUCAUACCACA...aGAAUGUGGCUAUU...CCUGA.CCGGUGC.GC.AUGCUCGG...............CUUGU.........-CCGAGAA...GC...CUUAAGGUC.UCG..ACGCUAC.GUUCACCUUG.....AAC.....CAAG..GGU..UCAA-..GGGU.....UACAGCCUGCG-GCGGCAU...CUCGGAGAUCCU
AAKK02000137.1/3410-3226 UUUACCCUGGG.GUGUGCGUCAGCAGGAUUUA.....aGUCCCUGAGCCGAUAAGCAAUACCUAA....GGGUUAGUAUUU-...GGUAA.CUAUUGA.GC.AAGCUCGG...............CAUGU.........ACCGAGAA...GC...C-UACGGUU.GUC..AUUGCUG.AUCCGCCUUG.....AAC....cAGCU..GGU..UCAAG..GGC-.....CACAAUCCUCA-ACGGCAC...CCUGGGGUAUUC
BA000031.2/2733820-2734004 UUUACCCUGGG.GUGUUCGUCAGGCGGAUUUA.....aGUCCCUGAGCCGAUAAGCAAUACCAAA....GGGUUAGUACUU-...GAUAG.CUAUUGA.GC.AAGCUUGG...............CAUGC.........ACCGAGAA...GC...C-UACGGUU.AUC..AUUGCUG.AUCCGCCUUG.....AAC....cAGCU..GGU..UCAAG..GGC-.....CACAAUCCUCA-ACGGCAC...CCUGGGGUAUUC
AM286415.1/3711867-3712050 AUUUCUCUGAG.GUGUUCGUCAGCGGGUCAG-......UCCCCUGAGCCGAUAUUUAAUACCAAC...aGAAUGUAGUGCCU..cCGUAA.CCGGUGC.GC.AUGCUCGG...............UCCG-.........-CCGAGAA...GC...CUUAAGGUU.GCG..ACGCUGC.GUUCACCUUG.....AAC.....CAUG..GGU..UCAAG..GGU-.....UACAGCCUGCG-GCGGCAU...CUCGGAGAUCCC
CP000302.1/950450-950269 UGCUCCCUGGG.AUAUUCGCCAGCUGGUAAU-......GUCCCUGUGCCGAUAAUUUUUAAACCA....GGGUGAAUGUUUU...UACUG.ACAUUGC.GC.AUGCUCAG...............CUUGU.........ACUGAGAA...GC...CUUAGGA-G.GUA..AUCAUUU.ACCCGCCUUG.....AAC.....CUAC..GGU..UCAAG..GGCU.....--ACACCGGCA-GCGGUAU...UUUGGGGAGCAU
AACK01000017.1/27996-27815 ACUUGCCUGAG.GUGUGCGUUACUCGUUAC--......GUCCCUGAGCCGAUAAUUUGAAACUUU....GAGUUGGACAUCU...AAAUG.CCGGUGA.GC.AGGCUUAC...............CUUGA.........-GUAAGAA...GC...CUAAAGGCA.AUU..AAGUUCG.ACUC-CCUUG.....AAC.....CUUC.uGGU..UCAAG..GAC-.....CACCACAAGUA-ACGGCAC...UUCGGGUUCUUU
BX936398.1/3749921-3750103 AUUUCUCUGAG.GUGUUUGCCAGCGGGCCAG-......UCCCCUGAGCCGAUAUUUAAUACCAAU...aGAAUGUAGUGCUC...CGUAA.CCGGUGA.GC.AUGCUCGG...............UCCG-.........-CCGAGAA...GC...CUUAAGGUU.GCG..ACGCUGC.GUUCACCUUG.....AAC.....CAAG..GGU..UCAAG..GGU-.....UACAGCCUGCG-ACGGCAC...CUCGGAGAUCCC
AACY023937400.1/581-403 AACUUCCUGGG.GUGUGCGCCAGUCGGUGAU-......GUCCCUGAGCCGAUACGCACAACCAC-....GGGGGUUGCACGU...UGGGG.CCGGUGU.GC.AUGUCCG-...............CCUGA.........--CGGAAA...GC...CUUAACGCC.UCC..-UGCAAC.CUCCACCUUG.....AAC....uUUCG..GGU..UCAAG..GGCU.....--AAACCGACA-GCGGCAC...GCCGGGAAGUCA
CP000746.1/718947-718765 GAUUACCUGAG.AUGCUCGCCAGCGGGUUAC-......GUCCCUGAGCCGAUACUUACAUACUUC....GAGUUGGUUCUC-...UACUG.UUGGUGU.GC.AGGCUUAG...............UUUCA.........-CUAAGAA...GC...CUAAAAACG.GUU..ACAACUG.ACUC-CCUUG.....AAC.....CGUC.gGGU..UCAAG..GACC.....GACCACCCACG-ACGGCAU...CUCGGGGCCUAA
CP000232.1/1712162-1711978 UUUACCCUGCG.AUGUUCGUGAAGAGCCGUGC.....aGUUU-UGAGCCAACACCAAAACUUA--....GGGAACCUGACAU..cCGGGC.AUGGCUU.GC.AGGCCCCA...............-GUUUc.......c-AGGGGAA...GC...AAAAAGUGU.CCG..UGGAGGU.ACCCACCUGC....uGAG.....AGCA..GGU..UCAAA..AACC.....--ACGGCAUUC-ACGGCAU..uUGUGGGGUUUUA
AE017143.1/796107-795926 CACUACCGGGG.GUGUUCGUUAUUAGUUAC--......GUCCCUGAGCCGAUAAUUGAAAACUUU....GAGUUGAACAUCU...AAUCG.CUGGUGA.GC.AAGCUUAC...............CUUGA.........-GUAAGAA...GC...CUAAAAGCU.AUU..AAGCUUA.ACUC-CCUUG.....AAC.....CAUU.uGGU..UCAAG..GGC-.....CUUCACUGAUA-ACGGCAC...UCCGGGUAUCUU
CP000117.1/5398416-5398599 GUUGCACUGCG.ACGUUGGUGACUGCCAUCAA.....gUUUUUUGAUCUAUGUCUUUAAGAAAAA....GGGAACCAAACGU...CUCUC.GUGGC-A.GU.AUACCGGG...............CUUGU.........ACCCGGAA...AC...UUUAAACGA.GGA.aAAUCGGU.ACCCACCUGG.....UUU.....AACC..AGG..UCAUA..AAC-.....---UUAGGUAAAACGGCGU...UGCGGUGAACUC
CP000521.1/1200632-1200448 CUGUCUCUGGG.AUGUUCGCCAGCCGGUCUGAu....u-CCCCUGAGCCGAUAUCAUCUCUUUA-....GGAUGGUGUUCUG...CAUAU.UUAGAGC.GU.AUGCCUAC...............CCCGA.........-GUAGGAA...AC...CCAGCAAGU.AUG..CGUCACC.-UCCACCUUG.....AAC.....UUUA.gGGU..UCAAG..GG--.....UAACGACAUGCAGCGGCAU..cUUCGGAGCAUUU
AAOH01000006.1/92254-92072 UGUUCUCUGAG.AUGCAGGUCAGUGGGUUAA-......GUCCCUGAGCCGAUAAAUUUUUUGUUA....GGGACGCAGUUU-...AUUAG.CUAUUGU.GC.AAGCUCGG...............CAUGU.........ACCGAGAA...GC...C-UGCGGCU.AGU..UGUUGUG.UUCCGCCUUG.....AAC.....CUUA.gGGU..UCAAG..GGC-.....UGACACCCGCA-ACCGCAU...CUUGGAGACACU
CP000436.1/730391-730576 GAUUACCUGAG.AUGUUUGCCGGCGGAUUAA-......GUCCCUGAGCCGAUACUGAAAACUUAA...uGAAUUGGCGUCC-...UGUUG.UUGGUGU.GU.AUGCUUGC...............-UAGCc.......aUGCAAGAA...AC...CUAAAAACA.AUA..UUAGCCG.AUUC-CCUUG.....AAC.....CGUA.gGGU..UCAAG..GACC.....GAACAUCCGCA-GCGGCAU...CUCGGGGCUAUU
CP000644.1/2821324-2821506 AAUUCCCUGGG.AUGUGCGUCAGCCGGUUCAA......GUCCCCGAGCCGAUAAUCAUACCCAAC...aGGGGAUCGGCCU-...UCUGG.CUAUUGC.GC.AUGCUCGG...............CACGA.........-CCGAGAA...GC...C-UGCGGUC.AGA..-UUCGAU.UCCCGCCUUG.....AAC.....CUAC..GGU..UCAAG..GGC-.....CCAAACCGGCA-ACGGCAU..cUCCGGGGUACCA
BA000043.1/2585765-2585579 ACCGUCCUAAU.GUGUUCGUCGGAUCACUGAU......CGUUUUGA-CCGAACAGUUUAUGAUCC....GGGAGCUCGGGGU..uUCCAA.GCGGCGU.GC.ACGCCUC-...............UUCGUc......acA-GGGGAA...GC...AUAAACCUU.GGA..ACAGGGC.ACCCACCUAUg...gGAG.....AGCG..GGU..UCAAA..ACG-.....--AAGGCAUCG-ACGGCAC..gAUUGGGACUGGC
AAOU01000016.1/1661-1842 UUAACCCUGGG.GUGUGCGUCAGUGAAUGAAC......GUCCCCGAGCCGAUAAGCAAAUACCCA....GGAUCUGCUUUU-...AUUAG.CUAUUGA.GC.AUGCUCAG...............CUCGA.........-CUGAGAA...GC...C-UACGGUU.AAU..GUUGCCG.AUCCACCUUG.....AAC.....UUCU..GGU..UCAAG..GGC-.....AUUAUUUCGCA-ACGGCAC...CUUGGGGAACUU
AE016827.1/441283-441084 GAUUUCCUGAG.GUGUUCGUCAGCGGGUUAC-......GUCCCUGAGCCGAUACUUACAUACUCU...aGAAUUGGUUCUC-...UAUAG.UUGGUGA.GC.AUGCUUGCccugaccuucgagguCCUGA.........UGCAAGAA...GC...CUAAAAACA.GUU..ACGACCG.AUUC-CCUUG.....AAC.....CGUC.gGGU..UCAAG..GACC.....GACCACCCACA-ACGGCAU...CUCGGGGUCUUC
DQ163568.1/634-454 AUAUCUCUAGG.AUGUUUGCCAGCGGGUCAG-......UCCCCUGAGCCGAUAUUGAAUAUAAAA....AAAUAUGGUGUU-...CUUAA.CUCGUGA.GC.AUGCUUGG...............UUCG-.........-CCAGGAA...GC...CUAAAGGUU.AUG..ACGCUAU.AUUCACCUUG.....AAC.....CAAG..GGU..UCAAG..GGC-.....CAAAGCUCGCA-GCGGCAU...CUUGGAGACCCC
CP000557.1/2605605-2605418 ACCGUCCUGAU.GUGUUCGUCGGGUCACCCAU......CGUUUUGA-CCGAACAGUCGAUGAUCC....GGGAGCCCGGGGU..uUCCAA.GCGGCGU.GC.AUGCCUCUu.............cGUU--g.......cAGGGGGAA...GC...GCAAACCUU.GGA..ACAGGGC.ACCCACCUAU....g-UGg...gAGCG..GGU..UCAAA..ACG-.....--AAGGCAUCG-ACGGCAC..gAUUGGGACUGGU
BA000004.3/1350679-1350867 AGAGUCCUGAG.GUGUACGUGCAUAACUGUAC......GUUU-UGAGCCAACACUUUUGAAUAA-....GGGAGCUUGUUGU..cUCCUC.AUGGAUU.AC.AUGCCCUUuc...........ucAU---a......gaUGAGGGAC...GU...AAGAAGUGA.UGA..GCAGAGC.ACCCACCUGC....cGAG.....GGCA..GGU..UCA-A..AAC-.....CAAAGUUUUCG-ACGGCAC..aUUUGGGACUCUU
AAZW01000077.1/13609-13792 UUUACCCUGGA.GUGUUUGUCAGAGGAUUCAC......GUCCCCGAGCCGAUAAGCAAUCCCUAA....GGGUUAGUACUU-...GAGUG.CUAUUGA.GC.AUGCUCGG...............CCCGA.........-CCGAGAA...GC...C-UACGGUA.AUC..AUUGCUG.AUCCGCCUUG.....AAC....uCGCU..GGU..UCAAG..GGCC.....AUCUAUUCUCA-ACGGCAC...UUUGGGGUAUCC
CP000507.1/3260662-3260842 UGCUCCCUGGG.UUGUGCGCCAGCUGGUAAU-......GUCCCUGUGCCGAUAUUUUUGACUUUA....GGGCAGGUGUUU-...UACCG.ACAUUGA.GC.AGGCUCGG...............CUCGU.........ACCGAGAA...GC...CUUAGGA-A.GUA..AUCGCAG.GCCCGCCUUG.....AAC.....CUAC..GGU..UCAAG..GGCU.....--ACACCGGCA-GCGGCAU...UCCGGGGAGCAU
CP000606.1/3644460-3644640 UGCUCCCUGUG.GUGUGCGUGAGUCGGUUAU-......GUCCCUGUGCCGAUAUUUACAAACUCA....GGGUGAAUGUUU-...UGAUG.ACAUUGC.GC.AAGCUCGG...............CGCGA.........ACCGAGAA...GC...CUUAGGAU-.UUG..AUCAUUU.ACCCGCCUUG.....AAC.....CUAC..GGU..UCAAG..GGCU.....--ACACCGGUA-ACGGCAU...CUUGGGGAGCAA
CP000075.1/336144-335966 UGCUCCCUGGA.GUGCUUGCCAGUCGGUCAU-......GUCCCUGAGCCGAUACGCACAACCAC-....GGGGGUUGCACGU...UGGGG.UUGGUGU.GC.AUGUCCG-...............CUCGA.........--CGGAAA...GC...CUUAAAACC.UCC..-UGCAAU.CUCCACCUUG.....AAC....uUUCG..GGU..UCAAG..GGCU.....--AAACCGACA-GCGGUUC...GUCGGGGAGUCC
CP000002.3/2770276-2770080 AAAGUCCUGAU.GUGUUUGUUGUACACCUA--......GUUU-UGA-CCGAACAUUUUUUUACUU....GGGAGUUCGAUGU..uUCCGA.AUGGAGC.AA.AUGCCUCUuau........cacu--CGUgug...cucAGGAGGAC...UU...GCAAAGUUU.GGA..ACAGAAC.ACCCACCUGC....cGAG.....AGCG..GGA..UCA-A..AACGa...aGGAAUACGACA-ACGGCAC..aAUCGGGACUUUU
AAWL01000035.1/260-442 AGUGCCCUGCU.GUGUUCGU--GUAAGCCCGG.....aUGUUUUGAGCCAACACAUACACUAU--....GGGAGCCUAACUC...UGAUU.AUGGCAU.GU.AUGCCCCAua...........cuCUUUU.........-GGGGGAC...AC...AUAAAGUAA.UCA..GGAGGGC.ACCCACCUGC....cGGG.....GGCA..GGU..UCAAA..ACA-.....--ACGGC--AAUACGGCAU...GGUGGGGACUUA
AE017340.1/2235806-2235990 GGUUUCCUGGG.GUGUUUGCCAGCAGGCUUAU......GUCCCUGAGCCGAUGCUUGUAUUAAAA....GGGGAUCACUGGC...---CU.GCCAUGA.GC.AAGCCCGG...............CUUGA.........ACCGGGAA...GC...CUACGGCAG.AUAccAUUUGCU.CCCCGCCUUG.....AAC....cAAUG..GGU..UCAAG..GGC-.....UACAGCCAGCA-GCGGCAC...CUUGGGAAGCCA
CP000764.1/1419388-1419571 CACAUCCUGCG.GUGUGCGUAACUCAUUUAU-......GUCU-AAAACCGAUGUUAGUAAUAA--....GGAAGCUCAACAU..uUAGUU.AUUAUAA.UC.AAGCCUUC...............CUUGU.........-GGAGGAA...GA..uGUAUGGUAA.CUG..UGAGGGC.AUCCACCUGC....gAGU.....AGCG..GGU..UUUUG..GAC-.....AUUUAGGAGGA-ACGGCAC..gUGCGGGGGUUUU
AADV02000115.1/4181-4364 GGAAAGCUGCU.GUGUUGGUGACUGCCAAUAAa....gUUUUUUGAU-CUAUGCUUUGAGUUUAA....GGGCGUUAACCA-...GCUAU.CGUGGUA.GU.AAACCGAG...............CUUGU.........ACUCGGAA...AC...AGAAACGAUaAGC..GGUCGAU.ACCCACCUGG.....UUC.....UUCC..AGG..UCAUA..AACU.....----GAGGUAAAACGGCAC...GGCGGUUUUUCA
AASA01000055.1/2997-3188 UCUUGCCUGGG.GUGUGCGUUACGAGUUAC--......GUCCCUGAGCCGAUAAUUUGAAACUUU....GAGUUGGACAUCU...AAC-G.CUGGUGA.GC.AAGCUUACccuaa.....uuuaaUUAGG.........AGUAAGAA...GC...CUAAAAGCA.GUU..AAGUUUG.ACUC-CCUUG.....AAC.....CGAC.uGGU..UCAAG..GAC-.....CAUUACUGGUA-GCGGCAU...CUCGGGUCUUUA
CP000448.1/929295-929469 AAACCCCUGCU.GUGUGCGUGAAUAGCUGUUA......AGUU-UUUGCCAACACAAAAAUUAA--....GGGAACCUAUCUC...CGCCU.AUGGCUU.GU.AAGCCCGC...............-UUCU.........-GUGGGAC...AC...AUUAAAUAU.GCG..GGAGGGC.ACCCACCUGC.....UAA.....-GCA..GGU..UAA-A..ACU-.....--ACGGCAUC--ACGGCUC...GGUGGGGUUUUU
AAVW01000041.1/27531-27348 GUUGCACUACG.ACGUUGGUGACUGCCAUCAA.....gUUUUUUGAUCUAUGUCUUUAAAGAAAA...gGGAAGCUAACAA-...GUCUC.GUGGC-A.GU.AAACCGGG...............CGUGU.........ACCCGGAA...AC...UUAAAACGAaGAA..AGUCGGC.ACCCACCUGG.....UUU.....AACC..AGG..UCAUA..AAC-.....---UUAGGUAAAACGGCGU...UGCGGUGAACUU
ABCF01000001.1/315152-315339 UACAAGCUGCG.UUGUACGUAAUGAUAAUAA-......AGUUUUAA-CCUUUAAACUGUAAUA--....GGGAGUUUUACAU..c-GAAG.CCGGAAU.GUcAGGCCGC-...............CAUGGa.......uA-GCGGAA..gAC...AAGAACGUU.UC-..UGCAAAC.ACCCACUUUG.....AGG.....AGUGguGGU..UUAAA..ACUU....uCUUAGACGAUUUACGGCAA..aUGCGGCCUACAU
BA000022.2/1886880-1887065 AAGUAACUACC.GCGUUGGUGACUGCCAACAAc....gUUUUUUGA-UCUAUGCUUGAAAAAUAA....GGGUGUCUCUGUG..cAUUCUgCGUGGUA.GU.AGACCGGG...............CUCGU.........ACCCGGAA...AC...GAAAACGAG.AAU..UGAUGAC.UCCCCCCUGG....uUAC.....ACCA..GG-..UCAUA..AACU.....----GAGGUAAAACGGCGU...GGUGGUGCUUCU
AAWF01000047.1/25976-26166 UUUACCCUGGGgGGGUUCGUCAGCGGAUUUAU......GUCCCUGAGCCGAAUAAGCAACAUAAC...aGGGUUGGUAUUGG...GGUAG.CUAUUGA.GC.AAGCUCGG...............CUUGU........aCCCGAGAA...GC...C-UGCGGUU.ACC..AUUACUGaUCCCGCCUUG.....AAC....cUGAU..GGU..UCAAG..GGCU.....ACGAUCCUUCA-ACGGCAU..uCCCGGGGUUCCC
CP000612.1/811548-811737 UUUACCCUGCU.UUGUGCGUGGGUUAUCUGG-......GGUUUUGAGCCAACAUUUUGCAAAAC-....GGGAGUCCGGUUU..cACGCA.AGGAAAU.GU.AGACCUUA..............cAUUGU.........AUAAGGAA...AC...AGGAAACUG.CGG..-AAGGGC.ACCCACCUGUu...gGAG.....AACA..GGU..UCAAAaaACCU.....UAGGUAACAAACACGGCAU...GGUGGGGUUUCC
AAOX01000042.1/20660-20846 AGAGUCCUAAU.GUGUUCGUUGUUUCACCUGA......CAUUUUGA-CCUAACAUUAUUCCUUC-....GGGAGCCCGGAUU...UCCUU.GCGGCGU.AA.ACGCCUC-...............UGGCU.........A-GGGGAC...UU..aCAAAAGC-G.GGA..AUAGGGC.ACCCACCUGC....uGAG.....UGCG..GGU..UCAAA..ACGAa..ggCAUCCAAGGCG-ACGGCAC..aAUUGGGACUCUU
CP000097.1/1017959-1018142 CAUGAACUGCU.GUGUUGGUGAAGGCCUUUUCu...agUGCUCUGAUCUGACUCUCUUUCGACUU....GGGGAGGCUGUC-...GUGAC.GGUGA-C.GU.AAACCGGC...............CUUGU.........AGCCGGAA...AC...--GAAGCCC.CAC..UUUGACU.CCCCUUCUGG....uUAA.....CUCC..AGG..UCG-A..CCAC.....--AAUCGGUCACACGGCAU...GGUGGUUCACCC
CP000407.1/2019501-2019694 GAACUGCUGUG.GUAUACGA--AUUCAUACCUa....uGUGU-UGA-CCGACUAUUUUUGUAUUAc.uaGGGAGACAAAGAU..cCUCUA.ACAGUAU.GC.AAGCUGG-...............CACAC.........--CCAGAA...GC..aACUAAGUUA.GAA..ACGCGUC.ACCCACCUGCu..uuU--ag.cgUG--cgGGA..UCA-A..UACA.....AUCCAUGGAUAACCGGUACcaaUACAGCAUUUUU
AF269334.1/1264-1454 AGUCAUCUGUG.GUGUUCGUAAGUUUGCUUU-......UUAUUUGGGCCUAACACUCUUUGAUCA....GGGAGCCCAAUAGguuUUCUC.GCAGCGC.AC.ACGCCUC-...............UAUAG.........--GAGGAC...UU...GCAAAACGA.GAA..ACAGGGC.ACCCACCUGU....aUAU.....AGCA..GG-..CCGAA..UGAUcaagcUAUUUAUAACU-ACGGCAU..cAACGGACUCUAU
AATP01000004.1/128564-128407 GGCGGGCUGGC.CGGUUCGACAGGCGUAACUA.....uUCCCCGGGGCCUUAGUCAUUCCACA--....GGGAGCUGUCCCU...GCCCU.UG-----.--.---CC---...............CGUG-.........----GG--...--...-----CUCG.GGC..ACACGGC.GCCCACCUAC.....UUU.....-GUA..GGU..UCCCG..GGAU.....CGACUUCGACCAUCGGCCG...GCUGGCUCGCCA
BA000028.3/1102945-1103130 UACAAGCUACA.UUGUUCGU--AUUAAUAUA-......AGUUUUAA-CCUCUAAUGUUGGAAUA-....GGGAGUUUUACAU...CGAAA.UUGGAAU.GCcGAGCCGCC...............GUUGA.........-AGCGGAA..gGC...AGGAAGUUU.UC-..UGCGAAC.ACCCACUUUGc...gAA-.....-GUGguGGU..UUAAA..ACUU....uUUAUUACAAGAUACGGCAA..aUGUGGCCUGUAU
AATN01002095.1/1924-2110 CGUCCUCGGCC.GUGUUCGAUAGCGGAUUCUUac.auuUGCCCUGACCCUAAUUAACGACCCC--....GGGCUCGUUACU-...CCUUG.UUGGUGU.GC.AUGUCCGC...............CCCGG........uUGCGGAAA...GC...C-CGAUGCG.AGG..UUCGCUG.GCCCACCUGA.....UCC.....-UUG..GGA..UCAAG..GUC-.....GUUUGGUCCGCAACGGCAC...GGCGGAGGACUC
CP000110.1/1358428-1358245 AUUGAACUGCU.GUGUUGGUGACGGCCUUUUUcu..agUGCUCUGAUCUGACUCUCUUUCGACUU....GGGGAGACUGUC-...GUGAC.GGUGA-C.GU.AGACCGGC...............CAUGC.........AGCCGGAA...AC...G-AAACC-C.CAC..UUUGUCG.CCCCUUCUGG.....UUC.....UUCC..AGG..UCG-A..CCAC.....--UGGGGCUCGCACGGCAU...GGCGGUUCACCU
AAOK01000003.1/289953-289770 CUUGGACUACU.CAGUUGGUGAGAGCCUUUUUcu..agUGCUCUGAUCUGACUCUCUUUCGACUU....GGGGCAACUGUC-...GUGAU.GGUGC-C.GU.AGACCGGC...............CUCGU.........AGCCGGAA...AC...--GAAGCCU.CAC..UUUGUCG.CCCCUUCUGG.....UAA.....CUCC..AGG..UCGA-..ACAC.....--UGGGGCUUGCACGGCUG...GGUGGUUCACCC
AP006716.1/1327404-1327594 AGUCAUCUGUA.UUGUUCGUACGUUUGCUUU-......UUAUUUGGGCCUAACACUUUUUGAUCA....GGGAGCCCAAUAGguuUUCUU.GCAGCGC.AC.ACGCCUC-...............AAUUG.........--GAGGAC...UU...GCAAAACAA.GAA..ACAGGGC.ACCCACCUGU....aUAU.....AGCA..GG-..CCGAA..UGAUcaagcUUUUUAUAACU-ACGGCAA..uCACGGACUCUAC
AANO01000007.1/70904-70723 CUCGGACUGCU.GUGUUGGUGACUGCCUUUCAc....aGUUUCUGAUCUGACUCCCUCUUCGACG...uGGGUGGUCUGUC-...GCGAC.GGUGA-C.GU.ACACCGGC...............CUCGU.........UGCCGGAA...AC...--GAAGCCC.CGC..UUUGACU.GCUCCUCUGG.....UAC.....UACC..AGG..UCGAA..CACU.....----GGGGCAAGACGGCAC...AGCGGUUCACCC
AANP01000003.1/193518-193701 AGCGGACUGCC.GUGUUGGUGACAGCCUUUCUcu..agUGCUCUGAUCUGACUCUCUGUCGACUU....GGGGCGACUGUC-...GUGAC.GGUGC-C.GU.AGACCGGC...............CCAGC.........AGCCGGAA...AC...--GAAUCCC.CAC..UUUGUUA.CCCCUUCUGG.....UUC.....AUCC..AGG..UCG-A..UCAC.....--UGGGGCUCGCACGGCAC...GGCGGUUCACCC
AP008934.1/1179168-1179359 AGUCAUCUGUA.GUGUUCGUAAGUUUGCUUC-......AUAUUUGGGCCUAACACUCUUUGAUCC....GGGAGCCCAAUGGguuUUCUU.GCAGCGC.AC.ACGCCUC-...............AUUUA.........G-GAGGAC...UU...GCAAAACAA.GAA..ACAGGGC.ACCCACCUGU.....UAU....aAGCA..GG-..CCGAA..UGAUcaagcAUUUUAUAACU-ACGGCAC..uAACGGACUCUAU
AE013598.1/1156001-1155818 CGUUCUCUGCU.GUAAACGACAGCGUGCAAAAca..uuCGCCUUGUCCCUUAAUUACGACCAC--....GGGGGCGCGACG-...-GAGC.CGGGUGU.GC.AGGUCCGC...............CUUGU.........AGCGGGAA...GC...CCGAUGGCC.UC-..ACAACGU.CCCCA-CUUG.....AAC.....CCCG..GGU..UCAAG..GUC-.....GUUUCGCCCGCAUCGUCAU...GGCGGAGAAUGC
CP000576.1/657516-657700 AGAUUACUGGA.UCUUUGGUUAAGUUCUUCUUua..ugUGCUCUGAUCUGACUCUCUUUCGACAU....GAGGAGACUGUC-...GUGAU.GCGGU-A.GU.AAACCGAU...............CUUGU.........AAUCGGAA...AC...G-AAAGCC-.CAC..UUUGAAU.CCUCUUCUGG.....CAU.....UUCC..AGG..UCGAU..GCAG.....--CAGAGAACUGACGGGGA...UCCGGUAUUACC
CP000419.1/1793770-1793575 AAAUUGCUGUG.GUAUACGA--AUCCACAUAUa....aGUGU-UGA-CCGACUAAUUUUUGUAUUa.ucGGGAGACAGAGGU..cUAUUA.ACAGUGU.GC.AGGCUGG-...............CUCAC.........--CCAGAA...GCa.aCUGAAGUUA.GUA..GCGAGUC.GCCCACCUGCuuuuu---uacguCGCG..GGU..UCA-A..UACA.....AACUGUGGAUCAUCGGUACcaaUACAGCA-UCCA
AAAM03000019.1/57691-57877 CGUUCUCUGCU.GUGAACGACGGCGCGUGCAAacauuuAGCCUUGUCCCUUAAUCACGACCAA--....GGAGGCGCGAC--...GAUAC.CGGGAGU.GC.AAGUCUGC...............CUUAG........gAGCGGAAA...GC...C-CAAUGGU.AUU..UCAACGC.CUCCA-CUUG.....AAC.....CACU..GGU..UCAAG..G-UC.....GUUUCGCGAGCAUCGUCAU...AGCGGAGAAUGC
CP000553.1/685817-685998 CCAGUACUGCU.UUGUUGGUAUAGGCCUUCUCa...agUGCUCUGAUCUGACUCUCUUUCGAUUU....GGGGAAGCUGUC-...GUGAA.AGUGA-C.GU.AUACCAG-...............CUUGU.........U-CUGGAA...AC...--GAAGCUC.CAC..UUUGAAU.CCCCCUCUGG.....UUC.....UUCC..AGG..UCGAU..GCUU.....--CUUGGGCCUUACGGCAA...AGCGGUACUUCC
AE017126.1/924642-924462 AGAGAACUGUU.UUGUUGGUGAUGACCUUUUAa....gUGCUCUGAUCUGACUCUUUUUCGACUU....GAGGAGACUGUU-...GUUAU.CGUGA-A.GU.AAACCAGU...............CAUGC.........AACUGGAA...AU...--GGAUCAU.UAC..UUUGACU.CCUCUUCUGG.....CUU.....AUCC..AGG..UCGAA.cGCU-.....----UAGGUCACACGGCAA...AAUGGUUCUAUA
CP000463.1/5354265-5354106 GCGAGGCUGCG.CUGCGCGUCAGGAGCCAAUA......UCCCCGGGGCCUUAUCGAUCCUUAA--....GGGAACUGUCCCU...-GG--.-------.--.---CCGGG...............UCCGUg.......gACCCGG--...--...---------.UC-..ACAUGGU.GCCCACCUAC.....UUU.....CGUA.gGGA.aCUCCG..GGAU.....CGAGCGCUUCA-ACGGCAG..cUGUGGCUUCGCG
BA000039.2/659756-659570 GUUUAGCUGCG.ACGUUGGUGACUGCCAAUAUu....gUUUUGUGAUCUACACUUGCAAAACAUU...uGGGAAUCAAUAC-...UGUGG.GCGGC-A.GU.AAACUGGU...............CUUUG.........AGCCAGAA...AC..uUCUAAGUCU.GCA.gUUAGUAU.UCCCCCCUAG....uUUU.....UACU..AGG..UCAUA..AAC-.....---UGAGGUAAAACGGCGU...CGCGGUUAGACU
AAUA01000002.1/251304-251487 GUCGGACUGCU.GUGUUGGUGACGGCCUUUUCu...agUGCUCUGAUCUGACUCUCUAUCGACUU....GGGGCGACUGCC-...GUGUC.GGUGC-C.GU.AAACCGGC...............CUUGU.........AGCCGGAA...AC...GAAUCCCCA.CUU..-UUGUUA.CCCCUUCUGG.....UUC.....UUCC..AGG..UCG-A..UCAC.....--UGGGGCUCGCACGGCAU...GGUGGUCCCCCA
BA000040.2/1665066-1665226 GCGAGGCUGCG.ACGCGCGUCCGGAGCCAUAU.....aUCCCCGGGGCCUUAUCGAUCCUUUA--....GGGAACUGUCCCU..g-----.-------.--.--GCCGGG...............CCCGUg.......gGCCCGGAC...--...---------.---..AUAUGGU.GCCCACCUAC.....UUU.....CGUA.gGGA.aCUCCG..GGAU.....CGAGUGCUUCA-ACGGCGU..cCGCGGCUUCGCA
CP000524.1/206871-206710 GGUGUUCUGCU.CUUCUCGACAGGAAAUACAGa...caUUCCCGGGGCCUUAUUGAUUCCUAA--....GGGAGCUGUCCCU...GAGAA.AG-----.--.---CC---...............CGUG-.........----GG--...--...-----CUUU.UUC..AUAUGGC.GCCCACCUAC.....UUG.....UGUA..GGU..UCCCG..GAAU.....CAGACUUUUCCAUCGGUCG..cUGCGGUUCACCA
CP000148.1/31807-31627 UUCUCUCUGCC.AUGCGCGUCAGGCUGAUAU-......GCCC--CAGCGGAACAUUUACGUAAGA...cGG--GGGUUCUUU...CUACC.GUGGUGU.GC.UGCCCCA-...............-UCAU.........G-UGGGAUu.uGC...CUGAAGCGG.UAC..AGAGCCU.-GCCACCUGU.....AAG....gAACU..CGC..UGU-G.aGGCC.....CUUACAAGCCA-ACGGCAU...GGUGGAGGGAUU
AAXV01000007.1/159165-159357 UAAAGGCUGCA.UUGUUCGU--AUAAUAUUA-......AGUUUUAA-CCUUUAAGCUGUAAAA--....GGGAGUUUUAUUA..uUGGAG.UUGGAAU.GAcGGGCCUCAcac.........uacUGUGC.........AUGAGGAUa.aGC...AGGAAAACU.UCU..-GCGAAC.ACCCACUUUG.....AGG.....AGUGguGGU..UUAAA..ACUU....uCUAUAAUAACU-ACGGCAU..aCGCGGCUUUUUA
AM236080.1/4231502-4231344 UGCGGUCUGCG.CCUCUCGACAGGAACCACAA......UCCCUGGGGCCAUACUCGAUCCAAA--....GGGAGCUGUCCCU..g-----.-------.--.--GCCAGG...............CCCGUg.......gGCCUGGAC...--...---------.---..ACACGGC.GCCCACCUAC.....GUU.....UGUA..GGC.aCCC-A..GGAU.....CGUAAACAUCCAUCGGUGG..uCGUGGAUCGCAC
CP000115.1/2966805-2966646 GCGAGGCUGCG.CCGCGCGUCAGAAGCCACAA......UCCCCGGGGCCUUAUCGAUCCUUAA--....GGGAACUGUCCCU...GGUCG.GG-----.--.---UC---...............CGUG-.........----GA--...--...-----UCCG.GCC..AUAUGGU.GCCCACCUAC.....UUU.....CGUA.gGGA.aCUCCG..GGAU.....CGAGCGCUUCA-ACGGCGG..uCGCGGCUUCGCG
CT978603.1/1256376-1256194 UUCGGACUGCU.GUGUUGGUGUUUGCCCUGCCa...agUGUUCUGAUCUGACUCCCUUUUCGACU...uGGGGGAGAUGUC-...CCGGA.AGUGA-C.GU.AGACCGGC...............CCAGU.........AGCUGGAA...AC...--GAAGCUC.CGC..UUUUCUC.CCCCUUCUGG.....UUU.....AUCC..AGG..UCG-A..ACC-.....UCAGGUC--AUCACGGCAC...GGCGGUCCACCC
AAMY01000003.1/191244-191085 GCGAGGCUGCG.ACGCGCGUCAGGAGCCACAA......UCCCCGGGGCCUUAUCGAUCCUUAA--....GGGAACUGUCCCU..g-----.-------.--.--GCCGGG...............UCCGUg.......gACCCGGAC...--...---------.---..AUAUGGU.GCCCACCUAC.....UUU.....CGUA.gGGA.aCUCCG..GGAU.....CGAGCGCUCCA-ACGGCGA..uUGCGGCUUCGCG
CP000111.1/646219-646403 AAGUCACUGGA.UCUUUGGUUAAGUUCUUCUUua..ugUGCUCUGAUCUGACUUUCUUUCGACGU....GAGGAGACUGUC-...GUGAU.GCGGU-A.GU.AAACCGAU...............CUUGU.........AAUCGGAA...AC...G-AAAGCC-.CAC..UUUGAAU.CCUCUUCUGG.....CUU.....UUCC..AGG..UCGAU..GCAG.....--CAGAGAACUGACGGGGA...UCCGGUAAACCU
AACV01012376.1/1014-1199 CGUUCUCUGCG.GUACUCGACGGCAUGUGCAAac.auuCGCCUUGU-CCCUUAAGAACGACACC-....GGGAGCGCGAC--...AGCGC.CGGGAGU.GC.AGGUCCGC...............CUUGU.........AGCGGGAA...GC...C-CGAUGGU.UCU..CCAGCGU.UCCCACUUGA.....GCC.....CCCG..GGU..UCAAG..GUC-.....GUUUCGCAUGCAUCGACAU...UGCGGAGAAUGC
CP000390.1/3466517-3466361 AGCGGUCUGCG.CCUCGCGACAGGAAUUCAAU......UCCCCGGGGCCUUAUCGAUCCUCUA--....GGGAGCUGUCCCU...GGCCU.UG-----.--.---CC---...............CGUG-.........----GG--...--...-----CUUG.GCC..ACACGGC.GCCCACCUAC.....UUU.....-GUA..GGU..UCCCG..GGAU.....CGGUCAUUCCA-UCGGUUG..uCGUGGAUCGCUG
CP000482.1/2822559-2822381 UUCUCCCUGUC.CUGUUCGACGGCUGUAGU--......GCC--CGGGCGGAAUAAACAAUGAAC-....GGGAGACCAUUC-...UUGUC.GUGGUGU.GC.UGCCCCA-...............-UUGC.........G-UGGGAUu.uGC...CUGAAGCGG.CAU..-AUGGUC.GCCCACCUGU....u-AAg...gAACU..CGC..CGGA-..GGUC.....CUUUUAGGUUG-ACGGCAG...GACGGGGAGAGU
CP000781.1/3399714-3399867 GCGGGGCUGCG.GGGCACGUUAGGAGACAUU-......UCCCCGGGGCCUUAUCGAUCCUUAA--....GGGAGCUGUCCCU..g-----.-------.--.--ACCUCGu.............cCCUGG.........ACUUGGAC...--...---------.---..ACACGGC.GCCCACCUAC.....GUU.....-GUA..GGU..UCCCG..GGAU.....--CGAACUCCG-ACGGCUU..cUGUGGCUCCGCA
AM167904.1/3157669-3157484 UUGUCCCUGCG.GUGCUCGUGACUUGGCCAUAc....aUUCUCUGAACCGAUGCUUUUCGGCAUAc..uGGUUGCGGGAGU-...GUCGA.GCGGG-U.GU.GA-UCGUCu.............cUUUGC.........UGACGA--...AC...CCGAUGCUC.UUC..GGAUCGC.GACCACCUUG.....AAC....cUAUG..GGU..UCG-A..GAU-.....GCCGGCC--UAGACGGCAC..uUGCGGGGCAUCU
BA000012.4/3164455-3164300 GACGGUCUGUG.CUUCCCGGCAGGAGAACAUU.....uUCCCCGGGGCCUUAACGAUCCUUA---....GGGAGCUGUCCCU...GGGAA.GA-----.--.---CC---...............CGUG-.........----GG--...--...-----UUUU.CUC..ACACGGC.GCCCACCUAC.....UUU.....-GUA..GGU..UCCCG..GGAU.....CGCUCUCUCCA-CCGGUUG...UGUGGAUCGUCA
CP000435.1/1304306-1304119 AGAGAACUGCU.GUGUUGGUGACAGCCUUUCUcu..agUGCUCUGAUCUGACUCUCUUUCGACAU....GGGGUGACUGUC-...GUGCU.GGUGC-C.GU.AAACCGGU...............CUCGU.........AACCGGAA...ACg.aAUCCUCUCG.AAA..UCUUUCG.CCCCUUCUGG.....UAA.....CUCC..AGG..UCG-A..CCAC.....--AGAUUGGCGCACGGCAU...GGUGGUUCAACC
CP000319.1/3880876-3880716 GCGAGGCUGCG.ACGCGCGUCAGGAGCCACAC.....aUCCCCGGGGCCUUAUCGAUCCUUCA--....GGGAACUGUCCCU...-GG--.-------.--.---CCGGG...............UCCGUg.......gAUCCGG--...--...---------.U-C..AUAUGGU.GCCCACCUAC.....UUU.....CGUA.gGGA.aCUCCG..GGAU.....C-GAGCGCUCCAACGGCGA..uUGCGGCUUCGCA
CU234118.1/1211196-1211357 GCGAGGCUGCG.ACGCGCGUCCGGAACCAACAu....aUCCCCGGGGCCUUAUCGAUCCUUAA--....GGGAACUGUCCCU..g-----.-------.--.--GCCAGG...............UCCGUg.......gACCUGGAC...--...---------.---..AUAUGGU.GCCCACCUAC.....UUU.....CGUA.gGGA.aCUCCG..GGA-.....UCGAGCGUUUCAACGGCGA..uUGCGGCUUCGCU
CP000283.1/4650246-4650087 GCGAGGCUGCG.UUUCGCGUCAGGAGCCAUAA......UCCCCGGGGCCUUAUCGAUCCUUAA--....GGGAACUGUCCCU...-GG--.-------.--.---CCGGG...............UCCGUg.......gACCCGG--...--...---------.UC-..ACAUGGU.GCCCACCUAC.....UUU.....CGUA.gGGA.aCUCCG..GGAU.....CGAGCGCUUCA-ACGGUCA..uCGUGGCUUCGCA
AAAP01001314.1/649-805 GCGGGGCUGCA.GAGUUCGUCAGGAGAACUU-......UCCCCGGGGCCUUAUCGACUCCCUC--....GGGAGCUGUCAC-...UGG--.-------.--.---CCUCG...............UCCGUg.......gACUUGG--...--...---------.CCA..ACACGGC.GCCCACCUAC.....UCU.....-GUA..GGU.aUCCCG..GGAU.....--CGACACUCCAACGGCUC..aCGUGGCUCCGCA
CP000738.1/2752042-2751884 UGCGGUCUGCA.CUUCUCGACAGGAACCACAA......UCCCCGGGGCCAUACACGAUCUCAA--....GGGAACUGUCCCU..g-----.-------.--.--GCCGGA...............CCCGUg.......gGUCCGGAC...--...---------.---..AUACGGU.GCCCACCUAC.....CUA.....-GUA..GGU..ACCCG..GGAU....cGUAAAAAAUCCAUCGGUCG..uUGUGGAUCGCGC
AAPJ01000002.1/435351-435507 GACGGGCUGCG.CGGUGCGCCAGGAGUAACAU.....aUUCUCGGGGCCUUAGUCAUUCCUA---....GGGAGCUGUCCCU...GCCUU.GG-----.--.---CC---...............CGUGG.........----GC--...--...-----CUGG.GGC..ACACGGC.GCCCACCUAC.....UCU.....-GUA..GGU..UCCCG..GGAU.....CGACAUCUCCA-UCGGCCG...GGUGGCUCGUCA
CP000552.1/686863-687046 UAAGUACUGGA.UCUUUGGUUAAGUUCUUCUUua..ugUGCUCUGAUCUGACUCUUUUUCGACUU....GAGGAGACUGUC-...GUGAU.GUAGA-C.GU.AAACCAAU...............CAUGU.........AAUUGGAA...AC...G-AAAACC-.CAC..UUUGACU.CCUCUUCUGG.....CUU.....UCCC..AGG..UCGAC..GCU-.....--CAGAGGACUGACGGGGA...UUCGGUGUAAAG
CP000698.1/4969602-4969428 UUCUCUCUGCC.CUGUUCGUGAGGUUAGUAC-......GCCC--CUGCGGAAUAAUCGAAGAAC-....GGGAGCCUUUUU-...AAACU.GUGGUGU.GC.UGCCC---...............CUUGC.........----GGGAuuuGC...CUGAAGCAG.UGU..-AAAGGA.GCCCACCUAU.....UAGg...gAACU..CGC..UGU-G.aGGCC.....----CCGAACCAACGGCAU...GGUGGAGAGAAU
CP000133.1/3679725-3679567 UGCGGUCUGCG.CCUCUCGACAGGAACCACAA......UCCCUGGGGCCAUACUCGAUCCAAA--....GGGAGCUGUCCCU...GUCUG.GG-----.--.--------...............CUCGUg.......gG-------...--...-----CCUG.GAC..ACACGGU.GCCCACCUAC.....GUU.....UGUA..GGC.gCCCAG..-GAU.....CGUAAACAUCCAUCGGUCG..uCGUGGAUCGCAC
AAUW01000002.1/210754-210600 UUGCGGCUGCC.CGAUACGUCAGGAACAUUA-......UCCCCGGGGCCUUACGCAUUCCCUU--....GGGAGCUGUCCCU...GCGCU.GG-GC--.--.--------...............CGUGG.........U-------...--...-----CCGU.UGC..AAACGGC.GCCCACCUAC.....AUA.....-GUA..GGU.uUCCCG..GGA-.....UUGCAAAUCCA-ACGGUCG...GGCGGCUGCACG
CP000774.1/2293600-2293756 CGGGAUCUGCC.CGGCGCGUUAGGAACACAUA......CUCUCGGGGCCUUACGGUCCUCAA---....GGGAGCUGUCCCU...GAGGG.AG-----.--.--------...............ACUGUg.......gU-------...--...-----CUUC.UUC..ACACGGC.GCCCACCUAC.....GUU.....AGUA..GGU..CUCCG..GGG-.....AACGAAGUUCCGACGGCCG..uGGCGGACCCACU
CP000943.1/3397496-3397653 GCGGGGCUGCG.GGGUGCGUCAGGAGACACAU.....aUCCCCGGGGCCUUAUCGACUCCCUC--....GGGAGCUGUCCCC...GC---.-------.--.---CCUGG...............UCCGUg.......gACCGGG--...--...---------.-GC..ACACGGC.GCCCACCUAC.....GCU.....-GUA..GGU.uUCCCG..GGAU.....--CGAUCCUCCAACGGCUU..uCGUGGCUCCGCG
CP000563.1/698015-697835 UGCUCCCUGGG.AUGCAUGCCAACUGGUAAU-......GUCCCUGUGCCGAUAAUUUUUAUCUCA....GGGUGAAUGCUU-...UACUG.ACAUUGU.GC.AUGCUCGG...............CUUGU.........ACCGAGAA...GC...CUUAGGA-G.GUA..AUCAUUU.ACCCGCCUUG.....AAC.....CUAC..GGU..UCAAG..GGCU.....--ACACCGGUA-GCGGCAU...UCUGGGGAGCAU
AE007870.2/814010-813852 UGCGUUCUGCG.CUUCCCGACAGGAACCACAA......UCCCUGGGGCCAUACUCGAUCCAAA--....GGGAGCUGUCCCU..g-----.-------.--.--GCCAGU...............CCUGUg.......gGACUGGAC...--...---------.---..ACACGGC.GCCCACCUAC.....UUU.....UGUA..GGC.aCCCAG..GAUC.....GUAAAUCUCCA-UCGGUCG..cCGCGGAUCGCAC
CP001233.1/2595247-2595430 UUUACCCUGGG.GUGUUCGUCAGCGGAUUUAU......GUCCCUGAGCCGAUAAGCAACAUAACA....GGGUUGGUAUUG-...GGUAG.CUAUUGA.GC.AAGCUCGG...............CUUGU.........ACCGAGAA...GC...C-UGCGGUU.ACC..AUUACUG.AUCCGCCUUG.....AAC....cUGAU..GGU..UCAAG..GGC-.....UACGAUCCUCA-ACGGCAU...CCCGGGGUUCUC
CP000924.1/1101622-1101804 AAAGCCCUGUG.GUGUACGUGAGGUCCGGUGAa....a-GUU-UGAGCCAACACCAAUAAUAA--....GGGAGCCUGGGCU..uUGGCA.GUGGAAU.AU.AGGCCGU-...............CUUCG.........A-ACGGAA...AU...AUGAAGCUG.CCA..AGAGGGC.ACCCACUUUG....uGAG.....UCCG..GGU..UCAAA..AACU.....--ACCGGGAGGCACGGCAC...UAUGGGGUUUUU
AAGD02002558.1/1673-1492 ACAACUCUAGG.GUGUUCGCCAGUACGUCUAUu....cCCC--UG--CCGAUACUUAAACUUAU-....GGAUGUGUUCUG-...UAUAU.UUUGAGU.GU.AUGCCCAC...............CUUGA.........-GUGGGAA...AU...CCAUUAAGU.GUA..-CGUCGC.GUCCACCUUG.....AACu...cUUCG..GGU..UCA--..GGGU.....AACGACCAUGCAACAGCAU..cUCGGGAGUGUUU
AL009126.3/2096113-2095927 AAGAAGCUACU.UUGUGCGU--AUUGUUAAUU.....aAGUUUUAA-CCUUUAAGCUGUAAUA--....GGGAGUUUUAUAU..c-GAAG.CCGGAAU.GUcAUGCCUCC...............AUUGC.........-AGAGGAC..gAC...AGGAACGUU.UC-..UGCAAAC.ACCCACUUUG.....AGG.....AGUGguGGU..UUAAA..ACUU.....UCUUACUUGCAUACGGCAAg.aCGUAGCGAAAGC
CP001124.1/290243-290062 CUCUCUCUGCC.CUGUCCGUGAGGUUACUAAC......GCCC--CUGCGGAAUAAUUUAUUGAAC....GGGUGACUGUUU-...CGACC.GUGGUGA.GC.UGCCCC--...............AUUGC.........G-CGGGAAu.uGC...CUAAAGCGG.UCC..-ACAGGA.GCCCACCUGA.....AUGg...gAACU..CGC..UGU-G.aGGC-.....CCCCGAAACCA-ACGGCAC...GGCGGAGAGAGU
CP000826.1/4345485-4345667 AUUUCUCUGAG.AUGUUCGCCAGCGGGCCAG-......UCCCCUGAGCCGAUAUUUAGUACCAAC...aGAAUGUGAUGAUC...CGCGA.UCGGUGU.GC.AUGCUCGG...............CCCG-.........-CCGAGAA...GC...CUUAAGAUU.GCG..ACAGCAC.GUUCACCUUG.....AAC.....CAUG..GGU..UCAAG..GGU-.....UACAGCCUGCG-ACGGCAU...CUCGGAGAUUCC
AL009126.3/2814682-2814490 AAAGUCCUGAU.GUGUUAGUUGUACACCUA--......GUUU-UGA-CCGAACAUUUUUUUGAUU...uGGGAGCCCGCAUU...UUUAA.AUGGCGU.AC.AUGCCUCUuu..........ucaUUC--gg.....uaAAGAGGAC...UU...ACAAGAUUU.AAA..AGAGGGC.ACCCACCUGC....uGAG.....AGCG..GGU..UCA-A..AACAa...aGGAAAGCUGCA-ACGGCAC..uAUUGGGACUUUA
CP000057.2/971464-971661 AAUUACCUGGA.GUGUUCGUCAGUAGGCUAU-......GUCCCUGAGCCGAUACUUUAAAUCUUA...uAAAUUGGUUUCC-...UAUCG.UUGGUGU.GU.AGGCUUAAccuuuga.cucguucAUUGG.........GCUAAGAA...AC...CUGAAAACG.GUA..UCAACUG.AUUU-CCUUG.....AAC.....CGUC.gGGU..UCAAG..GAC-.....UACUGCCCGCA-GCGGCAC...UCUGGGUCCUAU
CP000020.2/2339101-2339281 UUUACCCUGGA.GUGUUUGUAGGCGGAUCUAU......GUCCCUGAGCCGAUAAGCACAAAUUA-....GGGUUAGUACUU-...GUUUG.CUAUUGA.GC.AUGCUCGG...............CUUGU.........ACUGAGAA...GC...C-UACGGUA.AAC..UUUGCUG.AUCCGCCUUG.....AAC.....CUAG..GGU..UCAAG..GGCU.....--ACGACCACU-ACGGCAC...UUUGGGGUAUUC
AE008691.1/1726945-1726768 AAGUUCCUGUG.GGGUUUGUAGCGGGCUAAUU......UGUUUUCACCCAACGCAACCCAUAC--....GGGAAUCCGGGUU...CAUCA.GUGGAUG.AA.AUGCCUGG...............-GAAA.........-CCAGGAC...UU...CAGAAGCUG.GUG..ACAGGGU.ACCCACCUGC.....GAG.....AGCA..GGG.aUGAAA..ACAU.....----AGC-CGU-ACGGCUC...CGUGGGUAAAGU
CP000903.1/1546247-1546430 AAAUUCCUACG.GUGUACGUAGCUUGUGUAU-......GUCU-UAAACCAAUAAGUAUAAUGC--....GGAAGUUCAAUAU..uUAAAU.GUAGAUA.GC.AGGCCAUC...............UUUUU........aAGAAGGAA...GU...UACAAACAU.UUG..UGAGAAC.AUCCACCUGU.....GAG.....AGCA..GGU..UUAUG..GAC-.....AUCUAUAGAUA-ACGGCAU..aUGUGGGACUAUA
CP000878.1/704395-704578 UUUGGACUACC.UUGUUGGUGAAGACCUUCCUua..agUGCUCUGAUCUGACUCUUUUUCGACUU....GUGGAGACUGUC-...GUGAC.GGUGA-A.GU.AAACCAGU...............CUAGU.........AACUGGAA...AU...G-GAACC-U.CGC..UUUGACU.CCUCUUCUGG.....UUA.....AUCC..AGG..UCGAU..GCU-.....--CUGAGGUCUCACGGCAA...GGUGGUCUUGUA
CP000050.1/1085473-1085290 CGUUCUCUGCU.GUGAACGACGGUGUGCAAAAca..uuCGCCUUGUCCCUUAAUUACGACCAC--....GGGGGCGCGACG-...-AAGC.CGGGAGU.GC.AAGUCCGC...............CUUGU.........AGCGGGAA...GC...C-CGACGGC.CUA..ACAACGU.CCCCA-CUUG.....AAC.....CCCG..GGU..UCAAG..GUC-.....GUUUCGCACACAUCGUCAU...GGCGGAGAAUGC
BX548174.1/652620-652804 UACAUACUGGA.UCUUUGGUCAAGUUCUUCUUua..ugUGCUCUGAUCUGACUCUUUUUCGACUU....GAGGAGACUGUC-...GUGAU.GUAGA-C.GU.AAACCAAU...............CCUGU.........AAUUGGAA...AC...G-AAAGCC-.CAC..UUUGACU.CCUCUUCUGG.....CUU.....UUCC..AGG..UCGAU..GCAU.....--CAGAGAACUGGCGGGGA...UUCGGUGUUACC
AE004439.1/1932211-1932030 GAUUACCUGAG.GUGUUUGCCAGUGGGUUAU-......GUCCCUGAGCCGAUACUUUUAUUUUAU....GAAUCGGUUUCU-...AAUUG.UUGGUGU.GC.AUGCUUAG...............CUUGA.........-CUAAGAA...GC...CUAAAAAUA.GUU..AUAACUG.AUUC-CCUUG.....AAC.....CGUU.gGGU..UCAAG..GAC-.....UGAGACUUGCA-GCGGCAU...CUCGGGUUCUUC
CP000821.1/4485692-4485873 UGCUCCCUGGU.AUACGCGUCAGUCGGCAAU-......GUCCCUGUGCCGAUAUUUACAAACCCA....GGGUGAAUGCUU-...UAUUG.ACAUUGU.GC.AAGCUCGG...............CUCGU.........AUCGAGAA...GC...CUUAGGAU-.AUA..AUCAUUU.ACCCGCCUUG.....AAC.....CUAC..GGU..UCAAG..GGC-.....UUACGCCGGCA-ACGGUAU...UUUGGGGAGCAA
BA000034.2/1725130-1725326 ACAUUGCUGUG.GCAUACGA--AUCCACAUCUa....aGUGU-UGA-CCGACUAUUUCUUUGUAUuuucGGGAAACAAAGAC...UCUUU.CUAGUCU.GC.AAGCCGU-...............UUCAC.........--GCGGAC...GCaacUUCCAAGAA.AGA..GCGCGUU.ACCCACCUGCu..uaUACu...gCGCG..GGC..UCA-A..UACA....aAAACGUGGAUCACCGGUGCcaaUACAGCAUUCUU
AE005176.1/34739-34931 AAAGCACUGGA.AUGUGCGA--GCUCUUUCAU.....u-UUUUUGA-CCGACUAUAUUUGUAUUGcauaGGG-GUUCAUGAGa.cAUUCG.GUAGCGUa--.AUACCUCG...............AACGAa......agUAGGGGAA..g--...CUGAUGC-G.AAG..CGAGAAC.ACCCACCUGGc..guUUU.....AGCG..GGU..UCAA-..UAC-.....ACGGAAGAGCAUACGGCAUucaAUCAGUGUUUUU
AE008923.1/4015282-4015465 CGUUCUCUGCG.GUAAACGACAGCGUGCAAAAca..uuCGCCUUGUCCCUUAAUUACGACCAC--....GGGGGCGCGAC--...GAAGC.CGGGUGU.GC.AAGUCCGC...............CUUGU.........AGCGGGAA...GC...C-CGAUGGC.CUC..ACAACGU.CCCCA-CUUG.....AAC.....CCCG..GGU..UCAAG..GUC-.....GUUUCGCCCGCAUCGUCAC...GGCGGAGAAUGC
CP000923.1/1508100-1508282 AAAGCCCUGUG.GUGUACGUGAGGUCCGGUGAa....aGUU--UGAGCCAACACCAAUAAUAA--....GGGAGCCUGGGCU..uUGGCA.GUGGAAU.GU.AGGCCGU-...............CUUUG.........A-ACGGAA...AC...AUGAAGCUG.CCA..AGAGGGC.ACCCACGUUG....uGAG.....GACG..GGU..UCAA-.gAACU.....-ACCGGGAAG-CACGGCAC...UAUGGGGUUUUU
BX548175.1/727040-727223 CUUGAACUGCU.GUGUUGGUGACGGCCUUUUUcu..agUGCUCUGAUCUGACUCUCUUUCGAUUU....GGGGAGGCUGUC-...GUGAA.GGUGA-C.GU.AGACCGGA...............CUUGC.........UUCCGGAA...AC...--GAAGCCC.CAC..UUUGCUU.CCCCUUCUGG.....UUC.....UUCC..AGG..UCGA-..ACAC.....--UGGGGCUCGCACGGCAU...GGCGGUUCACCU
CP001037.1/5114015-5113832 GUUGCACUACG.ACGUUGGUGACUGCCAUCAA.....gUUUUUUGAUCUAUGCCUUUAAUGACAA....GGGAGUCAACUG-...UUCUC.GUGGC-A.GU.AUACCGGG...............CAUGU.........ACCCGGAA...AC...UUUAAACGA.GGA.aUUUAGGU.UCCCACCUGG.....AUA....aACCC..AGG..UCAUA..AAC-.....---UUAGGUAAAACGGCGU...CGCGGUGAACUU
AM939562.1/1-159 GGCGAUCUGCG.CUUCCCGACAGGAACCACAA......UCCCCGGGGCCAUACACGAUCUCAA--....GGGGACUGUCCCU...GGCCG.GA-----.--.---CC---...............CGUG-.........----GG--...--...-----UCCG.GGC..AUACGGU.GCCCACCUAC.....CUA.....-GUA..GGU..ACCCG..GGAU....cGUAAAUCAUCCAUCGGUCG..uCGUGGAUCGCAC
AE008917.1/324738-324896 GGCGAACUGCG.CUUCCCGACAGGUGUAACAGc....aUCCCCGGGGCCUUAUUGAUCUCUAA--....GGGAGCUGUCCCU...GUGAA.GG-----.--.--------...............CUUGCg.......gG-------...--...-----CUUU.CGC..AUAUGGC.GCCCACCUAC.....UUU.....-GUA..GGU..UCCCG..GGAU.....CAAUCACUACCAUCGGCCG..uCGUGGUC-GCCG
CP000851.1/4051647-4051828 UGCUCCCUGGG.AUAUUCGCUAGCUGGUAAU-......GUCCCUGUGCCGAUAAUUACAAACCCA....GGGUGAAUGUUU-...UACUG.ACAUUGU.GC.AAGCUCGG...............CUCGU.........ACCGAGAA...GC...CUUAGGA-G.GUA..UUCAUUU.ACCCGCCUUG.....AAC.....CUAC..GGU..UCAAG..GGCU.....--ACACCAGCGGUCGGUAU...UCUGGGGAGCAA
CP001390.1/479177-479352 UUCUCUCUGCC.CUGUUCGUGAGGUAUUAAA-......GCCC--CUGCGGAAUAAUCAUUGAAC-....GGGCGCCUUUUU-...AAGCU.GUGGUGU.GC.UGCCCC--...............UUUGC.........---GGGAAu.uGC...CUGAAGCAG.CAU..UAAAGGA.GCCCACCUGU.....UAGg...gAACU..CGC..UGU-G.aGGCC.....-----CCGACCAACGGCAU...GGUGGAGAGAUA
AE008691.1/1234385-1234567 AAAACCCUGUG.GUGUUCGUGUGACCCGGUGAa....aGGU--UGAGCCAACACCAAAAAUAA--....GGGAGCCUGGGCU..uUGGCA.GUGGAUU.GU.AGGCCGC-...............CUCGU.........C-GCGGAA...AC...AUGAAGCUG.CCA..AGAGGGC.ACCCACUUUG....uGAG.....GACG..GGU..UCAAA..ACCU.....--ACCGGUAGGCACGGCAC...UAUGGGGUUUUU
CP002469.1/514264-514080 UUUACCCUGGA.GUGUUUGUCAGCCGGAUUAA.....aGUCCCUGAGCCGAUAAGCAACACCAAA....GGGUUGGUACUU-...GAUCG.CUAUUGA.GC.AAGCUUGG...............CCCGU.........ACCGAGAA...GC...C-UACGGUA.AUC..AUUGCCG.AUCCGCCUUG.....AAC....cAGCU..GGU..UCAAG..GGC-.....CACAAUCCGCG-ACGGCAC...UCUGGGGUAUCC
CP002222.1/2091393-2091580 AAAUUACUAAG.GUGUGCGCAUUGCUCUAAACa...aaGUG--UUG-CCGAACAAUUAAUACUACu.uuGGGAUGUCCGUUA...GCUAA.UUCCAUA.AC.AUGCCUU-...............AUCCU.........--UUGGUA...GU...UAGCGAAUU.AGU..CAGAACG.UCCCACCUGCc...uUAA.....AGCG..GGU..CAA--..UACU.....GAAGGGCGAUUAACGGCAC..cACUAGUUUUUCC
CP003056.1/2576832-2577026 UACAAGCUGCG.UUGUACGUAAUAUUAAUA--......AAGUUUUAACCUUUAAACUGUUAUA--....GGGAGUUUAACAU...UAUUG.CGGGAAU.GCcGAGCCUUUug..........ccgUUUGGc.......aGGGAGGAU..gGC...AGGAACGCU.UU-..UGCGGAC.ACCCACUUUG.....AGG.....AGUG.uGGUucUAAAA..CUU-u...cUUAGUUUGAUU-ACGGCAA..cUGCGGCACAUAC
AP010655.1/1905876-1906069 GAAUUGCUGUG.GCAUACGA--AUUCACAUCUa....aGUGU-UGA-CCGACUAUUUUUUUGUAUuaucGGGAAACAAAAGU..cUUCUG.ACAGUAU.GC.AGGCCGU-...............UUCAC.........--GCGGAA...GCa.aCUAAAGUCA.GAG..-CGAGUU.GCCCACCUGCu...uAAGc...gUG--cgGGU..UCA-A..UACA.....AAACGUGAAUCAUCGGUGCcaaUACAGCAUUUUC
AY345075.1/252-94 UAUUAGCUGCU.UGGUUCGUGAGCUUAAUAUUa....aCCU--AGGACUACCACUAACUUUUA--....GGACAUCGUCCCU...GUCUA.AUA----.--.---CU---...............AAUUC.........----AG--...--...-----UUUA.GAU..AUAUGAA.GUCCACCUUU.....ACA.....UAAA..GGU..CUUUG.aAGG-.....--AUUUUAAGUAACGGCCA..aAGCGGUCAUGUA
URS0000CBFF5C_562/1-144 -----------.------------GGACUCCCa....gUCGGCACAUGCGAUAUUUCAUACCACA...aGAAUGUGGCGCUC...CGCGG.UUGGUGA.GC.AUGCUCGG...............UCCGU.........-CCGAGAA...GC...CUUAAAACU.GCG..ACGACAC.AUUCACCUUG.....AAC.....CAAG..GCG..UGUAC..CGU-.....UACAGGGGUC---------...------------
URS0000CBFF5C_562/1-144 -----------.-----------GGACUCCCA.....gUCGGCACAUGCGAUAUUUCAUACCACA...aGAAUGUGGCGCUC...CGCGG.UUGGUGA.GC.AUGCUCGG...............UCCGU.........-CCGAGAA...GC...CUUAAAACU.GCG..ACGACAC.AUUCACCUUG.....AAC.....CAAG..GCG..UGUAC..CGU-.....UACAGGGGUC---------...------------
#=GR URS0000CBFF5C_562/1-144 5VT0_R_SS .......................................(((.((((((....................((((((((((.(....(((((.((...........((((((...............(...)..........))))))..............)))).)))..))))))).)))).........................)))..))).)..)).........................................
#=GC SS_cons :<<<<<<<<<<.<<<<-<<<------------......<<<<-<<<<<<----------------....<<<-<<<<<<-<-...<<<<<.<<-----.<<.--<<<<<<..............._____........._>>>>>>-...>>...----->>>>.>>>..>>>>>>>.->>>------.....---.....----..>>>..>>>->..>>>-.....------------>>>>>>>...>>>>>>>>>>::
#=GC RF aaauccCUGcg.gUGUUCGucAGuugcuuaaa......guccCUGAgCCGAuaauuUuuuuaauu....GGGagcccucuuU...uucaa.guGGuGu.Gc.AaGCCcgg...............CUUGu.........AccgGGAA...gC...cuaAAacuu.gaa..agagggc.aCCCACCUgg.....aAc.....agCg..GGu..UCAAg..gacU.....uaauaacgaCaaaCGGCAc...cgCGGggauuuu
//