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RF00027.sto
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# STOCKHOLM 1.0
#=GF AU Infernal 1.1.2
Z70203.2/12451-12379 UCCGGU-GAGGUAGUAGGUUGUA.UAGUU--.-UGG-.....AAUAUUA.-CCA..---CCGGUG--AACUAUGCAAUUUUCUACCUU.ACCGGA
AC048341.22/3536-3622 CCUGGCUGAGGUAGUAGUUUGUG.CUGUUGGuCGGGUu...gUGACAUU.GCCC..GCUGUGGAGAUAACUGCGCAAGCUACUGCCUU.GCUAGU
AC018755.3/119936-120011 CCGGGCUGAGGUAGGAGGUUGUA.UAGUU--.-GAGG.....-AGGACA.CC-C..---AAGGAGAUCACUAUACGGCCUCCUAGCUU.UCCCCA
AL049853.1/18009-17931 UUGGGGUGAGGUAGUAGGUUGUA.UAGUUUG.-GGGC.....----UCU.GCCC..UGCUAUGGGAUAACUAUACAAUCUACUGUCUU.UCCUGA
AP000962.2/118093-118168 CCGGGUUGAGGUAGUAGGUUGUA.UGGUUU-.AGAGU.....----UAC.ACCC..---UGGGAGUUAACUGUACAACCUUCUAGCUU.UCCUUG
AF210771.1/1883-1955 UACGGU-GAGGUAGUAGGUUGUA.UAGUUU-.AGAAU.....----AUU.ACUC..---UCGGUG--AACUAUGCAAGUUUCUACCUC.ACCGAA
AL158152.18/38291-38377 UCAGAGUGAGGUAGUAGAUUGUA.UAGUUGU.GGGGUa...gUGAUUUU.ACCC.uGUUCAGGAGAUAACUAUACAAUCUAUUGCCUU.CCCUGA
AL158152.18/40779-40863 CUAGGAAGAGGUAGUAGGUUGCA.UAGUUUU.AGGGCa...gGGAUUUU.GCCC..-ACAAGGAGGUAACUAUACGACCUGCUGCCUU.UCUUAG
AL158152.18/37901-37981 -UGGGAUGAGGUAGUAGGUUGUA.UAGUUUU.AGGGU.....----CAC.ACCCacCACUGGGAGAUAACUAUACAAUCUACUGUCUU.UCCUAA
AC094021.2/47340-47253 CCAGGCUGAGGUAGUAGUUUGUA.CAGUUUG.AGGGUc..uaUGAUACC.ACCC.gGUACAGGAGAUAACUGUACAGGCCACUGCCUU.GCCAGG
AP001359.4/114553-114478 CCAGGUUGAGGUAGUAGGUUGUA.UAGUUU-.AGA--.....---AUUA.CAUC..--AAGGGAGAUAACUGUACAGCCUCCUAGCUU.UCCUUG
AF480570.1/1-79 -----GUGAGGUAGUAAGUUGUA.UUGUUGU.GGGGUagggaUAUUAGG.CCCC..AAUUAGAAGAUAACUAUACAACUUACUACUUU.C-----
BX005154.6/63678-63599 GCAGGCUGAGGUAGUUGGUUGUA.UGGUUUU.GCAUC.....AUAAUCA.GCCU..-----GGAGUUAACUGUACAACCUUCUAGCUUuCCCUGC
AY866046.1/496-584 CCAGGGUGAGGUAGUAAGUUGUA.UUGUUGU.GGGGUag.ggAUAUUAG.GCCC.cAAUUAGAAGAUAACUAUACAACUUACUACUUU.CCCUGG
AC117784.13/47755-47833 UUGGGGUGAGGUAGUAGGUUGUA.UGGUUUU.-GGGC.....----UCU.GCCC..CGCUCUGCGGUAACUAUACAAUCUACUGUCUU.UCCUGA
AAVX01008163.1/128-212 CUGGGUAGAGGUAGUAGGUUGCA.UAGUUUG.AGGGCa...gGGAUUUU.GCCC..-CAAAGGAGAUAACUAUACAACCUGCUGCCUU.UCCUGG
BAAE01218263.1/598-683 ACAGGGUGAGGUAGUAGGUUGUG.UGGUUUC.AGGGUu...gUGAUUUU.ACCC..CAUAAGGAGCUAACUAUACAACCUACUGCCUU.CCCUGG
CAAE01014991.1/464883-464800 UCAGGGUGAGGUAGUAGGUUGUA.UAGUUUG.GUGGG.....UGGGAUU.GCCC..ACUCAGGUGAUAACUAUACAGUCUAUUGCCUU.CCCUGA
AANG01619101.1/1216-1136 GUGGGAUGAGGUAGUAGAUUGUA.UAGUUUU.AGGGU.....---CAUA.CCCC..AUCUUGGAGAUAACUAUACAGUCUACUGUCUU.UCCCAC
AANH01007764.1/36699-36614 ACAGGGUGAGGUAGUAGGUUGUG.UGGUUUC.AGGGUu...gUUAUUUU.ACCC..CAUCGGGAGUUAACUAUACAACCUACUGCCUU.UCCUGG
AAYZ01324012.1/2457-2541 ACGGGGUGAGGUAGUAGGUUGUG.UGGUUUC.AGGGCg...gUGAUGUC.GCCC..-CUCAGCAGAUAACUAUACAGCCUACUGCCUU.CCCUGA
AAFR03057393.1/4201-4115 GCGGGGUGAGGUAGUAGGUUGUG.UGGUUUC.AGGGUa...gUGAUUUU.GCCC.cAAUCAGAAGAUAACUAUACAACCUACUGCCUU.CCCUGA
AAPY01378069.1/2181-2093 CUGGGGUGAGGUAGUAAGUUGUA.UUGUUGU.GGGGUugggaUUGUAGA.CCCC..AAUUAGAAGAUAACUAUACAACUUACUACUUU.CCCUGG
AAPN01341034.1/3404-3318 GCGGGAUGAGGUAGUAGGUUGUG.UGGUUUC.AGGGGa...gUGAUUUUgCCCC..AAUCAGAAGAUAACUAUACAGCCUACUGCCUU.CCCUGG
AAIY01003579.1/1841-1762 GUAGGAUGAGGUAGUAGAUUGUA.UAGUUGU.AGGUC.....----AUA.ACCC..AUCUUGGAGAUAACUAUACAGUCUACUGUCUU.UCCCAC
AANN01347783.1/1229-1152 UUGGGGUGAGGUAGUAGGUUGUA.UAGUUUG.-GGGC.....----CCU.GCCC..UGCUAUGGGU-AACUAUACAAUCUACUGUCUU.UCCUGA
AAZX01015868.1/1070-988 CCUGGGUGAGGUAGUAGGUUGUA.UAGUGGG.GAAUG.....-AAAAUU.CGUC..AUUAUGGAAUCCACUGUACAACUUGCUAACUU.UCCCGG
AALT01443655.1/3068-3143 CCAGGUUGAGGUAGUGGGUUGUA.UAGUUCA.G----.....AAUCACA.----..UCAAGGGAGAUAACUGUACAGCCUCCUAGCUU.GCCUUG
AANU01169061.1/33054-33138 CUAGGAAGAGGCAGCACGUUGCA.UAGUUCU.AGGGA....aGGCACUU.UUCC..CACUUGGGGGUAACUGUAUGCCCUGCUGCCUG.UCUUAG
AABS01000138.1/96907-96982 GCAAGUUGAGGUAGUAGGUUAUAuCAGUUGA.U----.....UAUAUGA.----..-ACCAGGAGAUAACUGUAUAGCCCACUAGCUU.ACUUGC
AAGD02006482.1/22892-22821 UCUGGU-GAGGUAGUAGGUUGUA.UAGUU--.-UAGA.....------A.UCUU..ACCUUGGUG--AACUAUGCAAGUUUCUACCUC.ACCAGA
AACT01004141.1/13602-13519 AUAACAUGAGGUAGUAGGUUAUG.CAGUUUG.GCGAC....aAUAUUUC.GUUG..-CAAAGGAGAUAACUGUGUAACUUGCUGGCUC.UUUUAU
AAZO01005184.1/23361-23435 CAGGGU-GAGGUAGUAGACUGUA.UAGUA--.-AAGA.....----AUU.ACAU..CAUUUGGAGG-UACUGUACAAUCUGCUAACUU.UCCCUG
AANI01016295.1/2335-2404 GCAAAUUGAGGUAGUAGGUUGUA.UAGUAGU.A----.....----UUU.----..---AUAGAGCAUACUAUACAGCGUGCUAGCUUuCUUUGC
AAPT01004257.1/151-220 GCAAAUUGAGGUAGUAGGUUGUA.UAGUAGU.A----.....-------.----..UCUAUCUAGCAUACUAUACAGCUUGCUAGCUUuCUUUGC
AAQA01000457.1/25368-25290 GCUCGAUGAGGUAGUAGGUUGUA.UAGUU--.-AUGA.....-GUUGUA.CCAU..-AAUCGGAGA-AACUGUCCAGCCUGCUAGCUUgCCGUGC
AAJJ01000960.1/12168-12093 UCUGUUUGAGGUAGUAGGUUGUA.UAGUA--.-AGUA.....----UUA.CACC..UAUUGGGAG--UGCUGUACAGCCUGCUAACUUuCCCAGA
AAPP01015675.1/360249-360318 GCAAAUUGAGGUAGUAGGUUGUA.UAGUAGC.A----.....-------.----..ACUAAGAAUCGUACUAUACAAUGUGCUAGCUUuCUUUGC
AAPU01010514.1/89793-89724 GCAAAUUGAGGUAGUAGGUUGUA.UAGUAGU.A----.....-------.----..CUUAUAGACCAUACUAUACAGCGUGCUAGCUUuCUUUGC
AABU01002759.1/2931025-2930956 GCAAAUUGAGGUAGUAGGUUGUA.UAGUA--.-GUAA.....-------.UUAC..ACAUCA-----UACUAUACAAUGUGCUAGCUUuCUUUGC
AAQB01006449.1/358437-358507 GCAAAUUGAGGUAGUAGGUUGUA.UAGUAGU.A----.....------A.----..UUAUUCAAUCAUACUAUACAAUGUGCUAGCUUuCUUUGC
AAFS01000369.1/71461-71393 GCAAAUUGAGGUAGUAGGUUGUA.UAGUAGU.A----.....-------.----..-CUUCAGAUCGUACUAUACAAUGUGCUAGCUUuCUUUGC
ACBE01248169.1/7760-7844 CGGGGU-GAGGUAGUAGGUUGUG.UGGUUUC.AGGGCa...gUGAUGUU.GCCC..CCUCGGAAGAUAACUAUACAACCUACUGCCUU.CCCCGA
AAKN02054092.1/95811-95899 CUGGGGUGAGGUAGUAAGUUGUA.UUGUUGU.GGGGUaaggaUUUAAGG.CCCC..AUUAAGAAGAUAACUAUACGACUUACUACUUU.CCCUGG
AAGW02075197.1/23048-23132 UCGGGGUGAGGUAGUAGGUUGUG.UGGUUUC.AGGGCa...gCGGUGUC.GCCC..-CUCAGCAGAUAACUAUACAGCCUACUGCCUU.CCCCGA
AABR05153093.1/1773-1848 CCAGGCUGAGGUAGUAGGUUGUA.UAGUUUA.G----.....AGUUACA.----..ACAAGGGAGAUAACUGUACAGCCUCCUAGCUU.UCCUUG
CAAE01013731.1/39581-39496 ACGGGGUGAGGUAGUAGGUUGUG.UGGUUUC.AGGGUg...gUGAUAUU.GCCC..AAUCAGGAGAUAACUAUACAACCUACUGCCUU.CCCUGG
AY866050.1/490-568 UUGGGGUGAGGUAGUAGGUUGUA.UAGUUU-.GGGGC.....----UCU.GCCC..UGCUAUGGGAUAACUAUACAAUCUACUGUCUU.UCCUGA
AY866357.1/820-906 UCAGAGUGAGGUAGUAGAUUGUA.UAGUUGU.GGGGUa...gUGAUUUU.ACCC.uGUUCAGGAGAUAACUAUACAAUCUAUUGCCUU.CCCUGA
AF274345.1/1758-1830 UCCGGU-GAGGUAGUAGGUUGUA.UAGUU--.-UGGA.....--AUAUU.ACCA..---CCGGUG--AACUAUGCAAUUUUCUACCUU.ACCGGA
AY866017.1/450-525 CCAGGUUGAGGUAGUAGGUUGUA.UAGUUUA.G----.....AAUUACA.----..UCAAGGGAGAUAACUGUACAGCCUCCUAGCUU.UCCUUG
AY866355.1/408-489 GUGGGAUGAGGUAGUAGGUUGUA.UAGUUUU.AGGGU.....----CAC.ACCCacCACUGGGAGAUAACUAUACAAUCUACUGUCUU.UCCUAA
AC231658.3/113295-113375 GUGGGAUGAGGUAGUAGAUUGUA.UAGUUUU.AGGGU.....---CAUA.CCCC..AUCUUGGAGAUAACUAUACAGUCUACUGUCUU.UCCCAC
AY866150.1/447-522 CCGGGUUGAGGUAGUAGGUUGUA.UGGUUUA.G----.....AGUUACA.----..CCCUGGGAGUUAACUGUACAACCUUCUAGCUU.UCCUUG
AY866290.1/298-385 CCAGGCUGAGGUAGUAGUUUGUA.CAGUUUG.AGGGUc..uaUGAUACC.ACCC.gGUACAGGAGAUAACUGUACAGGCCACUGCCUU.GCCAGG
EU624487.1/1401-1470 GCAAAUUGAGGUAGUAGGUUGUA.UAGUAGU.A---A.....-------.U---..--UACACAUCAUACUAUACAAUGUGCUAGCUUuCUUUGC
HM625839.1/191-271 UUGGGGUGAGGUAGUAGGUUGUA.UAGUUUG.AGGGU.....----UUA.ACCC.uUGCUGUCAGAUAACUAUACAACUUACUGUCUU.UCCCGA
AY866352.1/767-853 UCAGAGUGAGGUAGUAGAUUGUA.UAGUUGU.GGGGUa...gUGAUUUU.ACCC.uGUUUAGGAGAUAACUAUACAAUCUAUUGCCUU.CCCUGA
HM625839.1/1002-1087 ACAGGGUGAGGUAGUAGGUUGUG.UGGUUUC.AGGGUu...gUAAUUUU.GCCC..CAUCAGGAGAUAACUAUACAACCUACUGCCUU.CCCUGA
AY866020.1/478-553 CCAGGCUGAGGUAGUAGGUUGUA.UAGUUUA.G----.....AAUUACA.----..UCAAGGGAGAUAACUGUACAGCCUCCUAGCUU.UCCUUG
AC147162.2/101359-101275 CUAGGAAGAGGUAGUAGGUUGCA.UAGUUUU.AGGGCa...gAGAUUUU.GCCC..-ACAAGGAGUUAACUAUACGACCUGCUGCCUU.UCUUAG
AY866019.1/258-334 CCAGGUUGAGGUAGUAGGUUGUA.UAGUUUA.G----.....AAUUACA.----..UCAAGGGAGAUAACUGUACAGCCUCCUAGCUUuCCCUGG
AY866051.1/437-516 UGGGGGUGAGGUAGUAGGUUGUA.UAGUUUG.GGGGC.....----UCU.GCCC..UGCUAUGGGAUAACUAUACUAUCUACUGUCUU.UCCUGA
URS0000D56C46_9606/1-73 ------UGAGGUAGUAGGUUGUA.UAGUUUU.AGGGU.....----CAC.ACCCacCACUGGGAGAUAACUAUACAAUCUACUGUCUU.ACC---
URS0000D56C46_9606/1-73 ------UGAGGUAGUAGGUUGUA.UAGUUUU.AGGGU.....----CAC.ACCCacCACUGGGAGAUAACUAUACAAUCUACUGUCUU.ACC---
#=GR URS0000D56C46_9606 5ZAL_C_SS ........((...((((((((((..((.(((..................................))).)).))))))))))...))........
URS0000D56C46_9606/1-73 ------UGAGGUAGUAGGUUGUA.UAGUUUU.AGGGU.....----CAC.ACCCacCACUGGGAGAUAACUAUACAAUCUACUGUCUU.ACC---
#=GR URS0000D56C46_9606 5ZAM_C_SS ........((..((((((((.......................................................))))))))..).).......
#=GC SS_cons ((((((-((((((((((((((((.((((,,,.,<<<<....._______.>>>>..,<<____>>,,,)))))))))))))))))))).))))))
#=GC RF ccaGGcUGAGguAGuAgguUGuA.uAGUUuu.agggc.....ugauuuu.gccc..acuuaGGagaUAACUaUaCAaccUaCUacCUU.gCCugg
//