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RF00032.sto
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# STOCKHOLM 1.0
#=GF ID Histone3
#=GF DE Histone 3' UTR stem-loop
#=GF CC New structure 1JU7_A
#=GF CC New structure 1JWC_A
#=GF CC New structure 4L8R_A
#=GF CC New structure 4L8R_D
#=GF CC New structure 4QOZ_A
#=GF CC New structure 4QOZ_D
#=GF CC New structure 4TUW_C
#=GF CC New structure 4TUW_D
#=GF CC New structure 4TUX_C
#=GF CC New structure 4TUX_D
#=GF CC New structure 4TV0_B
CAAE01014536.1/93243-93288 ..ACAACGGCUCUUUUAAGAGCCACCaCAUGU-GACCGAAAGAGCAUUU
AC084589.1/5032-4987 ..CCAACGGCCCUCUUUAGGGCCACGaAUCACAUGAAUCCAAAUUGAU-
AL662809.14/46720-46765 ..CCAACGGCUCUUUUCAGAGCCACC.CACAGAGUCAGAAAAAGUGUCU
M74534.1/508-553 ..CCAAAGGCUCUUUUCAGAGCCACC.CACGCUGUCAAGGGAAGAGCCU
AAGE02005905.1/5861-5816 ..AAAACGGCCCUUUUCAGGGCCACUaGAGCAUUCCCUAAAAGAGUUG-
AAAB01044800.1/486-531 ..CAAACGGUCCUUUUCAGGACCACAaUACAUUACUCA-AGAGCUGUGU
AY128653.1/651-696 ..CAAAAGGCCCUUUUCAGGGCCCCCaAACUGUCACAGAAAG-AGCUGU
ABAV01048734.1/586-541 ..AAAACGGCUCUUUUAGGAGCUACCaCAUGCAAAAAAGUCAAUAGCC-
Z81128.2/25556-25511 ..CCAACGGCCCUCUUUAGGGCCACAaAUGAUAAAUCCAAACAGUCCG-
CR354435.20/79242-79197 ..CCAAAGGCUCUUUUCAGAGCCACCuCAGUGUAUCAGAAAAGUGUAA-
CAAI01002844.1/301-346 ..UUUGAGGCUUCACUAGAAGCCAUUa-CUAGAUACUUACAAACAAUGU
ABPA01000184.1/11471-11515 ..UUUUAGGCUUCACUAGAAGCCACC.AACGUUUACUUCGGACGUCAU-
AABL01000137.1/776-821 ..UUUGAGGCUUCACUAGAAGCCAUUa-CUAGAUACUUACAAACAAUGU
AC084502.1/4081-4126 ..CCAACGGCCCUCUUUAGGGCCACAaAUAAC-ACGAAUCCUAAAAUAU
AF361948.1/1198-1243 ..CUUUAGGCUUCACUAGAAGCCACC.AAAACUAUUUUUCCCGCCAAGU
AAGE02005905.1/11272-11317 ..CAAACGGCCCUUUUCAGGGCCACCaAACACACUCAUCAAGGAGUUG-
CAAE01014565.1/1508968-1508923 ..ACAACGGCUCUUUUAAGAGCCACU.CACUUUCUACUAAGAGCAGCGU
AAAB01008948.1/3301455-3301500 ..CAAACGGCCCUUUUCAGGGCCACC.AAUUGUGUUGAAAAGAACUUAU
AAEL01000068.1/8576-8621 ..GAACAGGUGGCACUAGCCACCAUA.AAUUUUGAGAUAAAAGUUUUAG
AL589879.21/31985-31940 ..CUAAAGGCCCUUUUCAGGGCCAUC.CAAUUAAUCCUCCAAAGGGUUG
AE014134.5/21504391-21504346 ..CAAUCGGUCCUUUUCAGGACCACCaUUCAGUUUUUAAAAGGAGGAA-
AAEL01000015.1/38686-38731 ..UGACAGGCGUUACUAGACGCCACA.AAUAGUUUAUGUUGCUCUUUGG
AE014134.5/21406015-21406060 ..UAAUCGGUCCUUUUCAGGACCAAAaACCAGAUUCAAUGAGAUAAAA-
Z83245.4/30945-30900 ..CCAACGGCCCUCUUUAGGGCCACAaAUGUGAUAAUAUCCCAUGUAA-
AL009179.1/138662-138707 ..CCAAAGGCUCUUUUCAGAGCCACC.CACAUGCGCGCUGAAAAGAUCU
ABCN01000686.1/16677-16632 ..AACUCGGUGUUUCUCAACACCACC.UAGACAAAGAAUCGGAUGUGCU
AAFD02000019.1/418583-418538 ..ACACUGGAUUUUAUAAAAUCCACU.CAUCAAUCAAAGAACUUCUUAU
ABEP02040002.1/589-545 ..ACCCCGGCCCUUCUCAGGGCCACA.CACAUAUCCCAGAAAGAUCUA-
AAEE01000004.1/565730-565685 ..GAACAGGUGGCACUAGCCACCAUA.AAUUUUGAGAUUAAAGUUUUAG
AABS01000176.1/158056-158011 ..AAAACGGCUCUUUUCAGAGCCACC.UAUUUAUACAAAGAGAUGAAGU
M61155.1/597-642 ..CCAAAGGCUCUUUUAAGAGCCACCaCGUUGCCACUGGGGAGAGCUG-
CR855729.2/461-505 ..ACAAAGGCUCUUUUCAGAGCCACC.GACACUUUCUGGGAAUGAGCU-
AAEE01000003.1/1110682-1110637 ..UGACAGGCGUUACUAGACGCCACA.AAUAGUAUAUGUUGCUCUUUGG
ABEP02004286.1/1361-1316 ..ACCCCGGCCCUUUUCAGGGCCACC.CAAAUGUCUAAGAAAGAGCUGU
AAFD02000019.1/419847-419892 ..AAACUGGAUUUUCUAAAAUCCACC.CACUUUCCAAAGAACUAAGAUU
V01355.1/567-612 ..CAAACGGCUCUUUUCAGAGCCACCaAAUAAUCAAGAAAGAAUACUG-
AAHC01037550.1/201-246 ..UAAUUGGAUUUUUUGAAAUCCACC.UGCAGUAGGAUAAAGGAGAUGU
AAFI02000005.1/2443043-2442999 ..CCAAAGGUGUUUUUUAACACCACA.CAAAAAACCAAUUUCUUUUCA-
ABAV01054220.1/1227-1272 ..CAAACGGUUCUUUUAGGAACCACCaCAUAUGACAAGAGUCAUGUCC-
AL844505.1/445330-445375 ..UUUAAGGCUUCACUAGAAGCCAUUaUAUAUAAUAUACACAUAUAUA-
AAGK01000004.1/1341571-1341616 ..ACCCAGGCUUCACUUGAAGCCAUA.AUCAUACACUAAUUUUUUAUCA
CR354435.20/94861-94817 ..CCAAAGGCUCUUUUAAGAGCCACC.CAUUUCAUCUGUGAAAGAGCA-
AAGK01000004.1/1343635-1343680 ..ACCCAGGCUUCACUUGAAGCCAUA.AUCAUACACUAAUUUUUUACCA
AAGJ04044602.1/134-89 ..CAAACGGCUCUUUUCAGAGCCACCaCA-ACCCCAAGAAAGAAUCAUU
CAAB02006192.1/1863-1818 ..CCAAAGGCUCUUUUAAGAGCCACU.CACAUCUUGUAAAGAGUAGAAU
CAAB02016978.1/7350-7306 ..ACAAAGGCUCUUUUAAGAGCCACAaCA-AGUCUGUUCAAGGAGCAU-
URS000080E1CD_10090/1-28 ggCCAAAGGCCCUUUUCAGGGCCACC.CA--------------------
#=GR URS000080E1CD_10090/1-28 1JU7_A_SS .......((((((....))))))..........................
#=GR URS000080E1CD_10090/1-28 1JWC_A_SS .......((((((....))))))..........................
URS000233597C_9606/1-26 ..CCAAAGGCUCUUUUCAGAGCCACC.CA--------------------
#=GR URS000233597C_9606/1-26 4L8R_A_SS .......((((((....))))))..........................
#=GR URS000233597C_9606/1-26 4L8R_D_SS ..........(((....))).............................
#=GR URS000233597C_9606/1-26 4QOZ_A_SS .......((((((....))))))..........................
#=GR URS000233597C_9606/1-26 4QOZ_D_SS ..........(((....))).............................
URS0002335968_32630/1-28 ggCCAAAGGCCCUUUUCAGGGCCACCcC---------------------
#=GR URS0002335968_32630/1-28 4TUW_C_SS .......((((((....))))))..........................
URS000080E236_32630/1-26 GGCCAAAGGCCCUUUUCAGGGCCACC-----------------------
#=GR URS000080E236_32630/1-26 4TUW_D_SS .......((((((....))))))..........................
#=GR URS000080E236_32630/1-26 4TUX_C_SS .......((((((....))))))..........................
#=GR URS000080E236_32630/1-26 4TUX_D_SS .......((((((....))))))..........................
#=GR URS000080E236_32630/1-26 4TV0_B_SS .......((((((....))))))..........................
#=GC SS_cons ..:::::<<<<<<____>>>>>>:::.::::::::::::::::::::::
#=GC RF ..ccAAaGGCUCUUUUaAGAGCCACc.aAcAuuuacaaaaAaauuuUgU
//