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RF00100.sto
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# STOCKHOLM 1.0
#=GF ID 7SK
#=GF DE 7SK RNA
#=GF CC New structure 5IEM_A
#=GF CC New structure 5LYS_A
#=GF CC New structure 5LYS_B
#=GF CC New structure 5LYU_A
#=GF CC New structure 5LYU_B
#=GF CC New structure 5LYV_A
#=GF CC New structure 5LYV_B
#=GF CC New structure 6MCF_A
#=GF CC New structure 6MCI_A
#=GF CC New structure 7SLQ_R
#=GF CC New structure 7T1N_A
#=GF CC New structure 7T1O_A
#=GF CC New structure 7T1P_A
X04236.1/1-328 NGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGC-GGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCAUCC...CCGA..UAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUU--.UCU
AM773430.1/1-329 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA..UAG.AGAC......GGu.ACCGU....................UCAUCGGUCAAGGGUAUACG-.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAG--CUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUGCAGACACAUCCAAGUGAGGCACUGC.AUGUG.GCAGUCUGCCUUUC.UUU
K02909.1/1-330 GGAUGUGA.GG.C-GAUCUGGCUGCGACAUCUG.UCA.CC..CUAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA.aUAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCA-UU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
AM773429.1/1-314 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCUAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGUGC.......GCUCGG.UCGAAGAGGAUGGCUGUCC...CCGA..UAG.AGAA......GC..ACCGA....................ACUCCGUUCAAGAGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAG-------.------CUU...---CAAGU.ACGUAGGGUAGUCAAG.CU.CCAAAUCUUCAAGCACAUCCAAGUGUGGCGCUGC.ACGUG.GCAGUCUGCCUUCC.UUU
AM773436.1/1-322 GGAUGUGC.CGgGCGAUUUGGCAGCGACACCUUcUCAcCAu.CCAUUGAUCGCUAGGGCAAGU....UCGGCU.GAUCUGGC-UGCaUAGAUCGGU.GUCCCC-..UCAU-CGGCGCUCAUCCGUGUUCGUCCCUCCCGAUGCUCUGC.......GCUCGG.UGGCAGCGGACUCCGACCC...CCGA..--G.GGAC.....cGGc.AACGGcuucuuc.............GUCGAGGUCGCGGGUUUAGGC.GUAGCGAC..GGCUCCCUGCUAGA----CCA...AACUCC-----AC.GGGCGAGGCga.GUAGG-CGa--GCUGGAA-----CU.C-.CGACUACAGCAUCCACAUCCAGA-UCGGCACUGC.ACGUG.GCAGUCUGCCUGU-.UUU
AM773431.1/1-311 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCUAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUC-CGU-UCCAUGUGUGUCCCUCCCGAAGCCCCGC.......GCUCGG.UGCUAGUGGACGUAU-CCC...GGCG..--G.ACGA......GC..AUCGUu...................------------GGUAUACCA.GUAGCUG-..-CUCCCCUGCUAGAACCUCCA...AACAAG--CUCAA.GGCCCAUUU...GUAGGAGAaACGUAGGGAAGUCAAG.CU.CCAAGACUUCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCGUAA.UUU
AM773433.1/1-328 GGAUGUGCaGGuG-GAAUUGGCCGCGACUCCCA.UCA.CUc.CCAUUGAUCGCUAGCGCUAGGa...UCGGCU.GAUCUGGUUGGU.UAGAUGGGGcGUCCCCCguUC--CCCGCACGGAUCCGCGUCCGGCCUCGCCGAUGCCCCGC.......GCUCGGaUCGACGGCCGAGAGGCUCA...CCGC.aCGCaCCAC......GCu.CACGG....................CUACGGCGCACGGGUUUAACCaCGGAGCUGcgAGUACCCACUUAGACC----A...AAC-CCCGGAGAC.GGCGACGGC.g.AUA-----.--AGAGGGAAGCACGC.UCuGCACCAUAUGUUGCACAUCCAAC-ACGGCGCUGC.ACGUG.GCAGUUUGCCUU--.GUU
AM773435.1/1-303 GAGCGUGU.GU.CAG----------GAGACA--.CGU.CUg.ACAUUGAUCGCUAUGAUCUUAu...ACGGCUuGAUCUGUCUAG-.AUUGGUUGU.UUCC---..----ACCACACCAUUCCGAUAGUUGAGCUCCCGCUGCACCCCcggggacGCACGG.UCGAGC-UCUGUUCAAAAUugc-UGG..UCGuAGAG......UU..UGCAUggcucggcggccaaugggguUAUUUCUGUUAGGGCUUCUCU.CUAUUUCCg.CGUAACGGGGAAGUUCGUUUU...CAGAAACCAUUUG.AAUUUAUGU...C-------.---------GC-----.--.-----------------UCCAUUGGAGGCAUUAC.ACGUG.GUAAUCUGCCUUUC.UUU
AB179256.1/1-294 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCUUCG-----GUCAA---...-GGG..UAU.ACGA......GU..A----....................---------------------.---GCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
X05490.1/245-574 GGAUGUGA.GG.C-GAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCAUCC...CCGA..UAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUGCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
M63671.1/163-493 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA.aUAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCUCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCA-UU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCUUUCU.UUU
AM773432.1/1-316 GGGUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCUAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCC..UU--CCCUCACAGCUCCAUGUGCGUCCCUCCCGAAGCUCAGC.......GCUCGG.UCGCAGAGGA---UGACCC...CCUA..--G.AAGA......GGa.CCGCU....................CCGCCGGUCUAGGGUAUAUGAcGUAGCUAC..ACUCCCCUGCUAGG----CUA...AAC-----CUCCA.AGACCAUUU...GUAGGAUG.ACGUAGGGAAGUCAAG.CU.CCAAGACUUCAGACACAUCCAAGUCAGGCACUGC.ACGUG.GCAGUCUGCCGUUC.UUU
X04992.1/244-574 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCAUCC...CCGA..UAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCA-UU..uGUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
AM773434.1/1-304 --------.--.--GGUUU------G--GCAUC.ACC.CCguCCAUAGAUCGCCCCCGUAGUGuguuUCGGCC.GAUCUGGCUGGUuCCGUGUUGC.CUCCGCC..ACAU---CCGCAUCUCUUCCACCGGCUCUCCCGACGCCUCGC.......GCUCGG.UCGAGAGUCUACCUCCUCC...CCGA..--G.UCAAcccccuGU..GAUUG....................CCGAAAGGUUGGGUGAAAAGC.GUAGCUGCa.GCCCCUGAUG----UUCUCCA...CUGCUAGGGUCAG.AGAGCGUCG...UGUCGAGC.GC-------AGCAAAG.C-.-CAAGACGCCACACACAUCCAAU-ACGGCGCUGCcACGCGgGCAGCCUGCCAU--.-UU
AANU01242908.1/30859-31189 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCAUCC...CCGC..UAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
AANN01178127.1/1580-1911 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGGCCUUCC...CCGA.aUAG.AGAC......GG..ACCGG....................UCUUCGGUCGAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
AAQQ01045895.1/3447-3777 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA..UAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUUC.UUU
AANG01281180.1/2213-2543 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA..UAG.AGGA......GG..ACCGU....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUUC.UUU
AAFC03074072.1/524-194 GGAUGUGA.GG.GCGAUCUGGUUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCAUCC...CCGC..UAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUUC.UUU
AAYZ01141529.1/1312-1642 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCAUCC...CCGC..UAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUG.UUU
AALT01379588.1/2052-2383 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGGCCUUCC...CCGA.aUAG.AGAC......GG..ACCGG....................UCUUCGGUCGAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUUC.UUU
ABDC01305949.1/10171-10507 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGC..UAG.AGGA......GG..ACCGGucuucg..............GGUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCAAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUCC.UUU
AAIY01588576.1/908-1238 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UUGAAGAGGACGACCUUCC...CCGA..UAGaAGGA......AG..ACCGU....................CCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAG-UCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
AAFR03002426.1/49563-49241 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA..UAG.AGGC......GU..ACCGU....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGA-------...-ACAAGCUCCCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUCC.UUU
AANH01005129.1/138410-138730 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCUAGGUUUGAUu...UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGUGUCCCUCCCGAAGCCCAGC.......GCUCGG.UGGCAGAGGACGAGGUCCC..cCCCG..--G.CGGA.....cGA..-----....................---CCAUCCAUCGGUGUACCA.GUAGCUAC..GCUCCCCUGCUAGAACCUCCA...AACAAG--CUCAA.GGCCCAUUU...GUAGGAGAaACGUAGGGAAGUUAAG.C-.UCCAAGCGUCAGGCACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUCC.UUU
BAAF04042483.1/6479-6795 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCUAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGGUCCAUGAGAGUCCCUCCCGAAGCUCUGC.......GCUCGG.UGGCAGCGGACGGUG-UCC...CCCA..--G.CGGU......GG..ACGACc...................-----AUUCAUCGGUAUACCA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACA--AGCUCAA.GGCCAA---...-UAGGAGAaACGUAGGGAAGUCAAG.C-.UCCAAGCUUCAGACACAUCCAACUGCGGCGCUGC.ACGUG.GCAGUCUGCCUUCC.UUU
AC147455.3/128369-128676 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..UCAUUGAUCGCCAGGGUUGAU....UCAGCU.GAUCUAGCUGGC.UAGGCAGGU.GUCCCCU..UCCUCCCUCACCACUCUGUACACGUCCCUCCAGAAGCUGUGU.......GCUCAG.UUGAAGAAGAAGGCUUUC-...CCAGaaUAG.AGAU......GG..ACCUG....................UCUUAGGUCGAGGGUAUAUGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGAAAC---...---UGAUU.AU-------UGACAAU.U-.-CAAGAAUAGAUUUACUUUAAUAUAA---UUUUC.---UG.GGAUGCUC--UUUC.UUU
AC188405.3/136382-136062 AAACGUGA.GG.ACAAUCUGGCUGUGACAUCCA.UCA.CC..CCACUGAUCUCCAGCGUUGAU....UCAGCU.GAUC-AGUGGGC.UGAGCAGGU.GUCCCCU..UUCUCCCUCACCAUUCCAUGUGCGUUCCUCCCAGAACUGCAC.......ACCUGG.UCAAAGAGGAAGGCCUUUC...CUGA..UAA.AGG-......AG..GACCA....................UUCUCAGUCAAGGGUAUGUGA.GUACCUGU..UCUCCCCUGCCAGAAUCUCAAacgAGCUCUCUGUAAA.AAUCACAAG...AUUUUAUU.GUGCAUGGUAGC--AU.G-.---AGUCUGUAAUCCCAGCUACCAGCUACUCAG-.--GUG.GCUGAG-GUAGUGG.GAU
CU104670.1/27701-28003 GGAUGUGA.GG.GUGAUCUGGCUAUGACAUCUG.UCA.CC..CCAGUGAUUGCCACUAUUGAU....UCUGCU.GAUCUAGCUGGC.UAGGU-GGU.GUCCCCU..UCCUCCCUCACCACUCCAUGUGCAUCCCUCCUGAAGCUGUGU.......GCUCAG.UUGAAGAGGAGGACCAUCC...CCAA..UAG.AGGA......GG..ACCAG....................UCUUCGGCUAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAAUCUCCA...AACAAGCUCUCAA.GGUCCA---...---GAGAC.AAGAUGUGAACUUCAU.GUcUCAA----------------UUGAUGAUCAC---.--GUG.GUUGUGUGGUGGUG.CAG
AACY021333937.1/619-306 AGAUAUGA.GA.GCUAUCUGGCUGUGACAUCUG.UCA.CC..CCACUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGAUGGCU.GUCCCCU..UCCUCCCUCACCCCUCCAUGUGUGUCCCUCCCAAAACUGCAU.......GCUCGU.UCGAAGAGGACAACCAUCC...CCAA..UAG.AGGA......GG..ACCAG....................UCUUUGGUCGAGGGUAUAUGA.GUAGCUGC..ACUCCUCUGCCAGAAUCUCCA...AACAAGCUCUCAA.GAAUAC---...--ACACAU.AAGC-----AGUU-AG.UAuAGACAGUUGCUAUUACAUUCAUAA-----GUUUG.UUCUG.UAAAUA-AGGUUUU.UAU
AC129097.27/184193-183893 GGAUGUGA.GG.GUGAUCUGGCUGCCACAUCUG.UCA.CC..CCAUUGAUCACCAGGGUUGAU....UCGGCU.GAUCUGGCUGAC.UGGGCGGGU.AUCCCCU..UCCUCCCUCACUGCUCCGUGUGUGUCCCUCCAGAAGCUGUGC.......GCUCAG.UGGAAGAGGAUGACCAUCC...CCGA..UAG.AGGA......GG..AUCGG....................UCUUCAGUCAAAGGUAUAAGA.GUAGCUGC..GCUCCCCUGCUAGGACCUCCA...AACAAGCUAUCAG.AAUGUUAUU...UUUCU---.--GUCUUAUGUCCAAC.CCcUCAUUAAAAUGUUCAUAGUAAAA-----------.ACAUA.--------------.UUU
CT737198.8/109814-109510 GGAUGUAA.GG.GCGAUCUGGCUGUGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....CUGGCU.GACCUGGCUGGC.UCGGCGGGU.AUCCCCU..UCCUCCCACACUGCUCCAUGUACGUCCCUCCAGAAGCUGCAC.......GCACAG.UCGAAGAGCAUGACCAUCC...CCUA..UAG.AGGA......GG..ACUGU....................UCUUCGGUCAAGGGUAUACCA.GUAGCUGU..GCAGCCCUGCUAGAACCUCUC...AACAAGCUCUCAA.GGA---CU-...---AGA--.--GUGAGAAUG---AGaCAgACUUACUUUCUUCAUGAUGCACAUGAGUC-----.-AUUG.-------GUCCAUA.UGU
AC200272.4/46787-47106 GGAUGUGA.GG.GCGAUCUGGCUGUGACAUCUA.UCA.CC..UCCUUGAUCACCACGGCUGAU....UUGGCU.-AUCUGGCUGGC.CAGGCGGGU.GUCCCCU..UCCUCCCUCACUACUCCACGUGUGUCCCUCCCGAAGAUGUGC.......GCUCAG.UUGAAGAAGAUGACUAUCU...CCCA..UAG.ACGA......GA..ACCAG....................UCUUUGGUCAAGGGUAUAUGA.GUAGGUGC..ACUCCCCUGCUAGAACCUCCA...AAUAAACUCUCAA.GAACUAGGG...AGAGGAGA.GUGAA----AAUUAAC.CUaGUUACAAUGAUUGUAUCCUUACAUUC---UUUGAuAAAUU.UCAAAA----UACU.UCU
AC196701.9/116655-116349 AGAUAUGA.GG.GCGAUCUGACUGUGACAUCUG.UCA.CU..CUAUUGAUCACCAGGGUUGAU....UCGGCU.GAUCUAGCUAGC.UAGGCAGGA.GUCCCCU..UCCUCCCUCACCACUCCAUGUGCUUCCCUCUUGAAGCUGUGC.......ACUCGG.---------------U---...----..--G.AAAG......GA..UGCCA....................UCUUCAGUCAAGGGUAUACAA.GUAGCUGC..ACUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAAAAGA.ACAUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCUGAAUGAGUUGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
AAWR02010297.1/23760-24090 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA..UAG.AGGA......GG..ACCGU....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
AADA01266996.1/7335-7665 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCAUCC...CCGA..UAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUUUGCCUUUC.UUU
CAAE01015006.1/595427-595745 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCUAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGGUCCAUGUGUGUCCCUCCCGAAGCUCCGC.......GCUCGG.UGGAAGAGGACGAGG-UCC...-UCG..CGG.CGGA.....cGA..-----....................---CCGUUCCUCGGUGUACCA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAG--CUCAA.GGCCCAUUU...GUAGGAGAaACGUAGGGAAGUUAAG.C-.UCCAAGCGUCAGACACAUCCAAUUGCGGCGCUGC.ACGUG.GCAGUCUGCCUUCC.UUU
AAQR03066699.1/17270-17600 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA..UAG.AGGA......GG..ACCGU....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAG-CUCUCAaGGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUC.UUU
AJ890104.1/1-319 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCUAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGGUCCAUGUGUGUCCCUCCCGAAGCUCCGC.......GCUCGG.UGGAAGAGGACGAGG-UCC...-UCG..CGG.CGGA.....cGA..-----....................---CCGUUCUUCGGUGUACCA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAG--CUCAA.GGCCCAUUU...GUAGGAGAaACGUAGGGAAGUUAAG.C-.UCCAAGCGUCAGACACAUCCAAUUGCGGCGCUGC.ACGUG.GCAGUCUGCCUUAC.UUU
AAGW02018299.1/84405-84735 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCAUCC...CCGC..UAG.AGGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUUC.UUU
AAEX03008397.1/4832-5162 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCAUCC...CCGA..UAG.AGGA......GG..ACCGU....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUUC.UUU
AJ890101.1/1-329 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA..UAG.AGAC......GGu.ACCGU....................UCAUCGGUCAAGGGUAUACG-.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAG--CUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUGCAGACACAUCCAAGUGAGGCACUGC.AUGGG.GCAGUCUGCCAUUG.UUU
AAPE02026038.1/9966-10297 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCC..UCCUCCCUCACCGAUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCCcccCCGA..--G.GAGA......GG..ACCGG....................UCUUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUCC.UUU
AAGU03002674.1/25068-24736 GGAUGUGA.GG.GCGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUGAU....UCGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCGC.......GCUCGG.UCGAAGAGGACGACCUUCC...CCGA..UAG.AGGA......GAggACCGU....................CCAUCGGUCAAGGGUAUACGA.GUAGCUGC..GCUCCCCUGCUAGAACCUCCA...AACAAGCUCUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUAGUCAAG.CUuCCAAGACUCCAGACACAUCCAAAUGAGGCGCUGC.ACGUG.GCAGUCUGCCUUCC.UUU
AAWZ02020286.1/110315-110000 GGAUGUGA.GG.GUGAUCUGGCUGCGACAUCUG.UCA.CC..CCAUUGAUCGCCAGGGUUAAU....UUGGCU.GAUCUGGCUGGC.UAGGCGGGU.GUCCCCU..UCCUCCCUCACCGCUCCAUGUGCGUCCCUCCCGAAGCUGCAC.......GCUCGG.UGGAAGAGGAUGACA-UCC...CAGG..UAU.AGAA......GA..AGUGUacugaggucuccag......UCUUUGGUCCCGGGUAUACGA.UAG-CUGC..GCUCUCUUGCUAGAACCUCCA...AACAAG--CUCAA.GGUCCAUUU...GUAGGAGA.ACGUAGGGUACUC-AG.A-.--------------------UAUUAUAGAAUUGU.ACUUU.-CAGUUC-CUAUUA.AUA
URS0000A763A0_9606/1-57 --------.--.-------------GGGAUCUG.UCA.CC..CCAUUGAUCGCCUUCG-----....--GGCU.GAUCUGGCUGGC.UAGGCGGGU.CCC----..------------------------------------------.......------.-------------------...----..---.----......--..-----....................---------------------.--------..---------------------...-------------.---------...--------.----------------.--.----------------------------------.-----.--------------.---
#=GR URS0000A763A0_9606/1-57 5IEM_A_SS .........................((((((((.(((.((..((...(((((((...............)))..)))).))..))...)))))))).)))...............................................................................................................................................................................................................................................................................................................
#=GR URS0000A763A0_9606/1-57 5LYS_A_SS ..........................(((((((.((..((..(((..(((((((...............)))..)))))))..))....))))))).))................................................................................................................................................................................................................................................................................................................
#=GR URS0000A763A0_9606/1-57 5LYS_B_SS ..........................(((((((.((..((..(((..(((((((...............)))..)))))))..))....))))))).))................................................................................................................................................................................................................................................................................................................
#=GR URS0000A763A0_9606/1-57 5LYV_A_SS ..........................(((((((.((..((..(((..(((((((...............)))..)))))))..))....))))))).))................................................................................................................................................................................................................................................................................................................
#=GR URS0000A763A0_9606/1-57 5LYV_B_SS ..........................(((((((.((..((..(((..(((((((...............)))..)))))))..))....))))))).))................................................................................................................................................................................................................................................................................................................
URS0000B21DF4_9606/1-58 --------.--.------------GGGGAUCUG.UCA.CC..CCAUUGAUCGCCUUCG-----....--GGCU.GAUCUGGCUGGC.UAGGCGGGU.CCC----..------------------------------------------.......------.-------------------...----..---.----......--..-----....................---------------------.--------..---------------------...-------------.---------...--------.----------------.--.----------------------------------.-----.--------------.---
#=GR URS0000B21DF4_9606/1-58 5LYU_A_SS ..........................(((((((.((..((..(((..(((((((...............)))..)))))))..))....))))))).))................................................................................................................................................................................................................................................................................................................
#=GR URS0000B21DF4_9606/1-58 5LYU_B_SS ..........................(((((((.((..((..(((..(((((((...............)))..)))))))..))....))))))).))................................................................................................................................................................................................................................................................................................................
URS0000D77914_9606/1-57 --------.--.-------------GGGAUCUG.UCA.CC..CCAUUGAUCGCCGAGA-----....--GGCU.GAUCUGGNUGGN.UAGGCGGGU.CCC----..------------------------------------------.......------.-------------------...----..---.----......--..-----....................---------------------.--------..---------------------...-------------.---------...--------.----------------.--.----------------------------------.-----.--------------.---
#=GR URS0000D77914_9606/1-57 6MCF_A_SS .........................((((.(((.((..((..(((..(((((((...............)))..)))))))..))....))))).).)))...............................................................................................................................................................................................................................................................................................................
#=GR URS0000D77914_9606/1-57 6MCI_A_SS .........................((((((((.((..((..((...(((((((...............)))..)))).))..))....))))))).)))...............................................................................................................................................................................................................................................................................................................
URS00023358F2_9606/1-65 --------.--.---------------------.---.--..---------------------....------.------------.---------.-------..------------------------------------------.......------.-------------------...----..---.----......--..-----....................---------------------.--------..---------------------...-------------.---------...--------.------NGAUGUGAGG.CU.----UCGGCCAGACACAUCCAAAUGAGGCGCUGC.AUGUG.GCAGUCUGCCUUUCuUUU
#=GR URS00023358F2_9606/1-65 7SLQ_R_SS ...........................................................................................................................................................................................................................................................................................................................................((((((....................)))))).......((((((((.......)))))..)))........
URS0002616B77_9606/1-56 -------------------------GGGAUCUG-UCA-CC--CCAUUGAUCGCCAGU------------GGCU-GAUCUGGCUGGC-UAGGCGGGU-CCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-----------------------------------------------------------------------------------------
#=GR URS0002616B77_9606/1-56 7T1N_A_SS .........................((((((((.((..((..((...(((((((...............)))..)))).))..))....))))))).)))...............................................................................................................................................................................................................................................................................................................
#=GR URS0002616B77_9606/1-56 7T1O_A_SS .........................((((((((.((..((..(((..(((((((...............)))..)))))))..))....))))))).)))...............................................................................................................................................................................................................................................................................................................
#=GR URS0002616B77_9606/1-56 7T1P_A_SS .........................((((((((.(((.((..(((..(((((((...............)))..)))))))..))...)))))))).)))...............................................................................................................................................................................................................................................................................................................
#=GC SS_cons <<<-<<<<.<<.<-<<---<<----<<<<<<<<.<<-.<<..<<<--<<<<<<<_________....__>>>-.>>>>>>>-->>-.-->>>>>>>.>>>->>-..>>-->>>>>>>--->>>,,,,,,,((((((<<<<-<<_____.......>>>>>>.<<<----<<<______>>>...->>>..,,).)))-......))..,,,,,....................,,,,,,,,,,,,,,,,,,,,,.,,,<<<--..-<<-<<<<<<------<<<<-...-<<<<<_______.______>>>...>>->>>>-.-->>>>>>->>--->>.>,.,,,,,,,,,,,,,,,,,,,,<<<-<<<<<<<<<<._____.>>>>>-->>>>>--.>>>
#=GC RF GGAUGUGa.GG.gcGAUCUGGCUGCGAcacCcg.ucA.Cc..CCAUUGAUCGCcAgGGUUGau....UCgGCU.GAUCUGGCUgGC.UaggcgGgu.gUCCCCU..UCCUcCCuCACcgcUCCaUGUgCGccccucCcGaaGCUgCGC.......GCuCgG.ucgAAGaggaagaccaucc...Ccga..Uag.agga......gg..aaCgg....................UcuUcgguCaaGGGUAUAuga.GUAgcugC..gcucCCcugCUAGAaCcUccA...AacaagCucUcAa.GGuccacuu...guAggAga.AcGcagGGuagucAag.cu.cCAAgAcuucAuaCACAUCCAaaugaGgCgcUGC.AcGUG.GCAgccUGcCucUc.uuU
//