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RF00168.sto
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# STOCKHOLM 1.0
#=GF ID Lysine
#=GF DE Lysine riboswitch
#=GF CC New structure 3D0U_A
#=GF CC New structure 3D0X_A
#=GF CC New structure 3DIG_X
#=GF CC New structure 3DIL_A
#=GF CC New structure 3DIM_A
#=GF CC New structure 3DIO_X
#=GF CC New structure 3DIQ_A
#=GF CC New structure 3DIR_A
#=GF CC New structure 3DIS_A
#=GF CC New structure 3DIX_A
#=GF CC New structure 3DIY_A
#=GF CC New structure 3DIZ_A
#=GF CC New structure 3DJ0_A
#=GF CC New structure 3DJ2_A
#=GF CC New structure 4ERJ_A
#=GF CC New structure 4ERL_A
U00006.1/98763-98567 CAGGCCAGAAGAGGC.GCGUUG.CCC.A--A..GUAa.CGGUGUUGGA--.......GGAGCCAGUCCUGUG...AUAACAC.CU.GAGGGG.GUG.C.AUCGCCGAGGUGAUUGAACGGCuGGCC.A....CGUUCA-U.C.AUCGGCUACA.GGGGCuGAAU.CCCCUG-GGUUGUCACCAGA..AGCGUUCgcagucgggcguuucgc.......................................AAGUGGUGG.AGCACUUCUGGGUGA
J03294.1/2297-2476 GGUGAAGAUAGAGGU.GCGAAC.UUC.AAGA..GUA..UGCCUUUGGAGA.......AAGAUGGAUUCUGUG...AAAAAGG.CU.GAAAGG.GGA.GcGUCGCCGAAGCAAAUAAAACCCcAUCG.-....GUAUUAUU.U.GCUGGCCGUG.CAUU-.GAAUaAAUGUAAGGCUGUCAAGAAA..UCA----........................................................UUUUCUUGG.AGGGCUAUCUCGUUG
AF269536.1/680-500 AAUAGAGUUAGAGGUuGCAUUA.UUA.AUGA..CUA..ACUUAUCAGAAGucgu...AUGGGACAUGUGUUG...A--AUAA.GU.GAAAGG.UAA.U.AAUGCCGAAAUGAUGUUAUUUC.CAUA.A....AUUAGCAU.U.GUGAAGUUGG.UUGAA.CAAUaAAAACAUCACAACCACGAAU..GCU----........................................................--UUCUUCA.AUAUUUAUUUGAAUU
AF270308.1/2156-2331 AAUAGAGUUAGAGGUuGCAUUA.UUA.AUGA..CUA..ACUUAUCAGAAGucgu...AUGGGACAUGUGUUG...A--AUAA.GU.GAAAGG.UAA.U.AAUGCCGAAAUGAUGUUAUUUC.CAUA.A....AUUAGCAU.U.GUUGGGACAA.CUUUC.GAAUaGAAGUUGUACUGUCACU---..UUA----........................................................----UGUGA.UGUGCUACCUUAUAU
M93419.1/332-511 AGUGAAGAUAGAGGU.GCGAAC.UUC.AUCA..GUA..AAAGCUUGGAGAa......GAAUGAGCUUCAAUG...AAAAGCU.UU.GAAAGG.GAAcG.UUCGCCGAAGUGAAGAAAAA--.CUCAuU....UUUUUCUU.U.GCUGGUCCUG.CAUU-.UAAGaGAUGCCGGAUUGUCAAGGCGg.UGC----........................................................-CGCCUUGG.AGAGCUAUCUCACUG
AF306669.1/1019-1194 AUAUUUUGAUGAGGC.GCAUCA.AUC.AUGA..GUA..AAGUUUAGAUUAc......UGUCUGCUAACAG--...-CUAAAU.UU.GAAAGG.GUG.C.GAUGCCGAAGC-AAUUAUAAU-.AGCA.G....UUAUAAUU.U.GUUGGACUUUuUGGU-.UAAGaGCUGAGAGUUUGUCAUUAUU..UAA----........................................................AAAUAAUGG.AGUGCAUCACUUGUA
X00008.1/296-492 CAGGCCAGAAGAGGC.GCGUUG.CCC.A--A..GUAa.CGGUGUUGGA--.......GGAGCCAGUCCUGUG...AUAACAC.CU.GAGGGG.GUG.C.AUCGCCGAGGUGAUUGAACGGCuGGCC.A....CGUUCA-U.C.AUCGGCUAAG.GGGGCuGAAU.CCC-CUGGGUUGUCACCAGA..AGCGUUCgcagucgggcguuucgc.......................................AAGUGGUGG.AGCACUUCUGGGUGA
X15196.1/270-75 GCAGCCAGAAGAGGC.GCGUUG.CCA.A---..GUAa.CGGUGUUGGA--.......GGAGCCAGUCCUGUG...AUAACAC.CU.GAGGGG.GUG.C.AUCGCCGAGGUGAUUGAACGGCuGGCC.A....CGUUCA-U.C.AUCGGCUACA.GGGGCuGAAU.CCCCUG-GGUUGUCACCAGA..AGCGUUCgcagucgggcguuucgc.......................................AAGUGGUGG.AGCACUUCUGGGUGA
AL591976.1/186683-186486 UGGUGAGGUAGAGGUuGCGAGA.UGC.ACUA..GUA..AUUUUUUCGAGGcgaa...ACAAAGACGCCGACG...ACAAAGA.AU.GAACAG.GUU.G.AUCGCCGAAGUGACUAUUUUCU.CUUU.GuuuaGAAAUAGU.U.GUUGGGACAG.UUUCC.UAAA.GGGGCUGGACUGCUAUAAGAa.UUUGUCGaaau....................................................UUCUUAUAGgUGUGCUAUCUGACAA
AL596166.1/112469-112272 UGGUGAGGUAGAGGUuGCGAGA.UGC.ACUA..GUA..AUUUUUUCGAGGcgaa...ACAAAGACGCCAAUG...ACAAAAA.AC.GAACAG.GUU.A.AUCGCCGAAGUGACUAUUUUUU.CUUU.GuaucGAAAUAGU.U.GUUGGGACAG.UUUCC.UAAA.GGAGCUGGACUGCUAUAAGAa.UUUGUCGaaau....................................................UUCUUAUAGgUGUGCUAUCUGACAA
AAMR01000029.1/5147-5324 AUCGCACGUAGAGGC.GCAAUU.AUA.AAAA..GUA..GUUUUCGUU---.......GGGGUGAUGCCAAUG...AGCGGGA.AU.GAAAGG.UCU.A.AUUGCCGAAGUAAAUUGUAU--.AUCU.-....AAGCAAUU.U.GCUGGGGUUG.UGCU-.CAAUaGGUACAACACUGCCAUAGUC..UUAAUUUu.......................................................AAACUAUGG.AGCGCUACUGUAGGG
CP000002.3/2878377-2878198 GGUGAAGAUAGAGGU.GCGAAC.UUC.AAGA..GUA..GGCUUGAUGAGGa......AGAUGGAUUCCGAUG...AAGAAAG.CC.GAAAGG.GGA.GcGUCGCCGAAGCGGGGAAAAAUC.CACU.C....GUUUUUCC.U.GCUGGCUUUA.CAUU-.GAAUaAAUGUGAGGCUGUCAAGAAA..UCA----........................................................-UUUCUUGG.AGAGCUAUCUCGUUG
BX950851.1/4451556-4451748 CAAGCCAGAAGAGGC.GCGUCG.CCC.AG--..GUA..AGAUAUCGGAGG.......AACCGUAAUCCGCUG...AUGAUAU.CC.GAGGGG.GAG.C.GACGCCGAGAUGCGGUGAAAUU.CGGC.-....UUUCACCC.U.AUCGACUACA.GAGGCuGAAU.CCUCUG-GGUUGUCACCGGA..UUCGUCCugauggacgucca...........................................GCAAGGUGG.AGCGCUUCUGGGUGU
EF419299.1/175-1 AAAAGAGUUAGAGGUuGCGUCU.UUA.AUUA..GUA..ACACUUCAGAAGuuauu..AAGGAACGUGUGUUG...A--AAGU.GU.GGAAGG.UAA.A.GAUGCCGAAAUGAAUGAUACC-.CUUA.A....UUAUCAUU.U.GUUGGGACAG.UUAUC.GAAUaGAAACUGUACUGUCACA---..AUU----........................................................----UGUGA.UGUGCUACC-GACGG
CP000046.1/1759610-1759435 AAUUGAGUUAGAGGUuGCAUGU.UUA.AUUA..GUA..ACUUGUCAGAAGuauuu..AUGGUACAUAAGUUG...A--ACAA.GU.GAAAGG.UAA.A.GAUGCCGAAAUAGAUAUAAACC.AUAA.-....AUUAUAUC.U.AUUGGGACAG.UUUUC.GAAUaGGAACUGUACUGUCACA---..GAA----........................................................----UGUGA.UGUGCUACCUUAUAU
BA000037.2/1373591-1373770 UAUCGACGUAGAGGC.GCAAUG.GUA.AAGA..GUA..ACUAUUAUU---.......GGGGUGAUGCCAAUG...AAUAAUA.GU.GAAAGG.UAU.CcAUUGCCGAAGUGAAUUGCAU--.AUCA.-....AAGCAGUU.U.GCUGGGGUUG.CAUCC.GAAA.GGAACAACACUGCCAUAGUA..UUUAAUGua......................................................UAACUAUGG.AGCGCUACUGUAGGU
CP000647.1/4829910-4829675 AUUGCCAGAAGAGGU.GCGUUG.CCC.AG--..GUAa.CCGUAUUGGA--.......GGAACCAGUCCGGGG...AAGAUAC.GU.GAGGGG.GAG.C.AACGCCGAGGUGAAAGAGCGUCuGGUC.A....CGCUCC-U.C.GCCGGCCACA.GGGGCuGAAU.CCCCUG-GGUUGUCACCAGA..AACGUUCgcagucgggcguuucauacccgaacaccucagcgcccaaagcggugagucgggucuACAAGGUGG.AGCACUUCUGGGUGA
BA000004.3/1819757-1819575 AGUGAGGAUAGAGGU.GCAAAA.ACC.AAGA..GUA..CACAAUUGGAGGa......GAAUGAGAUCCGUUG...AGAAUUG.UG.GAAAGG.GGA.A.UUUGCCGAAGC---UGGAAGAAuCUCA.U....GUUCUGAA.G.GCUGGUUCUG.UAUU-.AAAUaAAUACAGAACUGUCAUAUAGcgGAUGUU-........................................................GCUAUAUGG.AGGGCUAUCUCACGC
ABCF01000065.1/4547-4725 AGUGGUGAUAGAGGU.GCGGAC.UUUcAUCA..GUA..GAUGCUUCGAGGa......GUAUGGGCUCUUAUG...AAGGGUA.UC.GAAAGG.GAA.A.UUCGCCGAAGUGGAAGCAGGCU.CAUA.-....UCUGUUUG.C.GCUGGUUCUG.UGUU-.UAAGaGAUGCAGGAUUGUCAAGAUUa.ACA----........................................................--GUCUUGG.AGAGCUAUCUCACGU
AE017143.1/992934-993104 ACAAAUUGUAGAGGU.GCAAAU.CCG.AUAA..GUA..UUUCUUCU----.......GAGUGGAAAGCGAUG...AAGGGGA.AG.GAAAGG.CGU.A.UUUGCCGAAAUCAAUUAAGC--.GUCA.-....UCUUAGUU.G.GUUGGGGUCG.UUGCC.GAAA.GGGACGACACUGUCGUAAUU..CAA----........................................................-UAUUACGG.AGUGCUACUAUUAGG
CP000002.3/3366091-3365915 UAGUGAGGUAGAGGUuGCGCGG.AUG.AUGA..GUC..GCAUGUGUGAGG.......CUGAUGGGGCCGAUG...AUCAUAU.GC.AAAAGG.CAU.C.AGCGCCGAAGCAUAAGGAAGCC.AUUC.-....AUUCUUUA.U.GCUGGGUCUG.CAUU-.GAAUaAGUGCAGGACUGCCGCGGGU..AUU----........................................................--CCCGCGG.AGGGCUAUCCGGAGA
CP000029.1/981298-981477 AGAUUUUGAUGAGGC.GCAUCA.AUC.AUGA..GUA..AACUUUAGAUAAu......UUGUCUGCUAACAAU...UAUAGAG.UU.AAAAGG.GUG.A.GAUGCCGAAAUGAUUCAUAAU-.AGCA.G....UUAUGAAU.C.GUUGGACUUAaUGGU-.UAAGaGCUAUAAGUUUGUCAUUAUU..AUU----........................................................AAAUAAUGG.AGUGCAUCACUUGUA
AAWP01000069.1/5541-5721 UAUUGCCGUAGAGGU.GCAGUC.UCG.AAGA..GUA..GCUAUUAUU---.......GGGGUGAUGCCAAUG...AAUAAUA.GU.GGAAGG.CGA.GgAUUGCCGAAGUAGGUGGCCU--.AUCG.-....AAGCCACU.U.GCUGGGGUUG.UCUCU.GAAA.GGAACAACACUGCCAUAGUA..UAUUUACauu.....................................................AAACUAUGG.AGCGCUACUGUAGGG
AAKK02000085.1/12844-12662 UGUUGCCGUAGAGGC.GCGGUC.UCG.AAGA..GUA..GCUAUUAUU---.......GGGGUGAUGCCAAUG...AAUAAUA.GU.GGAAGG.CGAaG.AUUGCCGAAGUAAGUAACUC--.AUCA.-....AAGUUACU.U.GCUGGGGUUG.UAUCU.GAAA.GGAACAACACUGCCAUAGUA..UAUAUUCacauu...................................................AAACUAUGG.AGCGCUACUGUAGGG
CP000416.1/1669940-1669758 UCGAAUAGAAGAGGC.GCGACC.AAC.AAGA..GUC..GCUUUCCGGAGA.......UGGGUCACAUUGCUG...AUGGAAG.GU.UAAAGG.GGC.G.GUCGCCGAAAUUUACGCAUUUU.GACC.G....GAUGCGUG.G.GUUGGGUCCU.GGUU-.GAACaAGUCAGGGACUGUCGCAGUCa.AAUAAU-........................................................CGGCUGCGG.GGCGCUUUCAACGAU
AM263198.1/783761-783564 UGGUGAGGUAGAGGUuGCAAGA.UUC.ACAA..GUA..AUUUUUUAGAAGcgaa...ACAAAGACGCUGAUG...ACAAAGA.AU.GAACAG.GAU.G.AUUGCCGAAGUGACUAUUUUCU.CUUU.GuuuaGAAAUAGU.U.GUUGGGACAG.UUUCC.UAAA.GGAGCUGGACUGCUAUAAGAa.UUUGUCGaaau....................................................UUCUUAUAGgUGUGCUAUCUGACAA
AP006716.1/1558409-1558233 AGAAAUUGAUGAGGC.GCAUCA.AUC.AUCA..GUA..UAUAUUAGAU--.......AAACUGUCUGCAACA...GCUAAUA.UA.GAAAGG.GUG.C.GAUGCCGAAAUGAAUCAUAAU-.CGCA.G....CUAUGAUU.U.GUUGGACUUUgUGGU-.UAAGaGCUGAAAGUUUGUCAUUAUU..AUU----........................................................UAAUAAUGG.AGUGCAUCACUUGUA
ABDQ01000005.1/49327-49153 AACUAAGAUAGAGGU.GCGAGA.UUU.AAGA..GUA..GUAUUAUG----.......GAGUUAAGUGCUAAG...AAGUAAU.AA.GAAAGG.AAA.U.UUCGCCGAAGCUUAUAGAUAAUaCUUU.A....AUGCUAUU.U.GCUGGGAUUA.CAUA-.AAAUaUAUGUAAGACUGUCACAAAU..AAA----........................................................-GUUUGUGG.AGAGCUAUUAUUUUA
AE016827.1/1325416-1325239 UACACAUGUAGAGGU.GCGAAU.AUU.AUAA..GUA..UUUUUCCA----.......GAGUGGAUAACAAUG...AAGGAAA.UU.GAAAGG.AAU.A.UUUGCCGAAAUCAGUUAAGC--.GUCA.-....UCUUAACU.G.GUUGGUAACG.UCACC.GAAA.GGAACGUUACUGCCAUAGUC..AUUUUUGau......................................................UAACUAUGG.AGCGCUACUCGUGGG
CP000569.1/516240-516411 ACAAAUCGUAGAGGU.GCAAAU.CCG.AUAA..GUA..CUUUUUCU----.......GAGUGGAGAACGAGG...AGGAAAA.AG.GAAAGG.CGU.A.UUUGCCGAAAUCAGUUAAGC--.GUCA.-....UCUUAAUU.G.GUUGGGGUCG.UUACC.GAAA.GGGACGACACUGUCGUAAUC..CUU----........................................................GUAUUACGG.AGUGCUACUGCUAGG
BA000031.2/1190723-1190903 UGUUGCCGUAGAGGC.GCAGUC.UCG.AAGA..GUA..GCUAUUAUU---.......GGGGUGAUGCCAAUG...AAUAAUA.GU.GGAAGG.CGAaG.AUUGCCGAAGUAAGUCGUAU--.AUCA.-....AAACGCCU.U.GCUGGGGUUG.UAUCU.GAAA.GGAACAACACUGCCAUAGUA..UAUUUACauu.....................................................AAACUAUGG.AGCGCUACUGUAGGG
CP000425.1/2337129-2337310 CACAUCGAUAGAGGUcGCAACU.GAU.AUGA..AUC..--UACGCCGAGU.......UGGAGCACAACAAAG...ACGCGUA.UUaGAGGGGgAGA.A.GUUGCCGAAAGAAUUUUGAC--.GCUC.A....G-CAAAGU.U.CUUGGGCUAG.UGAG-.GAAAaCUCACUAGACUGUCGCAAAUggUUAAGA-........................................................ACCAUGCGG.AGGGCUAUUCGUUCA
AASA01000017.1/10332-10501 ACAAAUUGUAGAGGU.GCGAAU.UCA.AUAA..GUA..UUUCUUCU----.......GAGUGGAAAACGAUG...AAGGGGA.AG.GAAAGG.UGA.A.UUUGCCGAAAUCAAUUAAGC--.GUCA.-....UCUUAAUU.G.GUUGGGGUCG.UUGUC.GAAA.GAAACGACACUGUCGUAGUA..AAU----........................................................--GCUACGG.AGUGCUACUGUUAGG
AP008934.1/1400599-1400421 AGGUUUUGAUGAGGC.GCAUCA.AUC.AUUA..GUA..AAGAUUAGAAGA.......AUCUGACUGCUAGCA...GCUAAUU.UU.GAAAGG.GUG.A.GAUGCCGAAACGGUUAUAAU--.AGCA.G....CUUAUAACaU.GUUGGACUUUaUGGU-.UAAGaGCUAAGAGUCUGUCAUUAUU..UUA----........................................................AGAUAAUGG.AGUGCAUCACUUGUA
AAOX01000015.1/22460-22639 AGUGAAGGUAGAGGU.GCAAAC.UUC.AUCA..GUA..AAAGCUUGGAGAa......AGAUGAGUUUCCGUG...AAAAGCU.UU.GAAAGG.GAAuG.UUUGCCGAAGAAAAGGAAGUCU.CAUU.-....UCUUUCUU.U.UCUGGUCCUG.UAUU-.GAAUaAAUACUGGAUUGUCAAGACA..GCG----........................................................CCGUCUUGG.AGAGCUAUCUCACUG
AL009126.3/3421348-3421169 CAGUGAGGUAGAGGUuGCGCGG.AUG.AUGA..GUC..ACACAUGCUA--.......GGCUGACAGGGGCUGuuaAACAUGU.GU.AAAAGG.CAU.C.AGCGCCGAAGUGUGGAGAAAGCcGAUC.-....CUUCUCUA.U.GCUGGGACUG.UAUCU.GAAUaAGUGCAGGACUGCCGCGUGC..UUU----........................................................--UUCGCGG.AGGGCUAUCCGGAGA
AE008691.1/719320-719498 CGCAUAAAUAGAGGA.GCUGCC.AAGcAU--..GUA..UUUGGCGAGGUGuuaaggaGAAGAACCUCCAAUA...CUCGCUG.AA.GAA-GG.UUU.G.GCUGCCGAAAGGGUGAGCUUG-.UUCU.U....GAGCUCAU.C.CUUGGUGGUA.AAC-A.CAAA.-GUUUACCACUGUCAUGGGA..CCU----........................................................--CCCAUGA.AGCGCUAUUUAUGCA
AE004439.1/1026545-1026371 UACUUGUGUAGAGGA.GCGAUC.ACU.AUAA..GUA..UUUUUUCU----.......GAGUGGAUAACGAAG...AGGAAAA.AG.GAAAGG.AGU.G.ACCGCCGAAAUCAAUUGAAA--.GUCA.-....UUUUGAUU.G.GUUGGUGGCG.UAUUC.GAAA.GGAACGUCAUUGUCAUAGUC..UUUUUU-........................................................AAACUAUGG.AGCGCUACUGGUUGG
CP000436.1/843556-843727 UACAUAUGUAGAGGU.GCGGCU.GUU.AUAA..GUA..AUUUUUU-----.......GAGUGGAUAACGAUG...A-AAAAA.AU.GAAAGG.AAU.A.GUUGCCGAAAUCAAUUAAAA--.GUCA.-....UUUUAAUU.G.GUUGGGGGCG.UAUUC.GAAA.GAAACGUCACUGUCAUAGUA..UUU-AU-........................................................CCACUAUGG.AGCGCUACUGGUUAG
CP001186.1/1355449-1355630 CUCAAAGGUAGAGGCcGCGAUA.GGA.AAGA..GUA..AGCUAUGGGAGAu......UUAAUGGAAUCUGUG...AUCAUAGgUU.GAAAGG.GAC.U.AUUGCCGAAAUAUAAGAAUAAC.CAUC.U....UAUUCAUA.U.AUUGGGACUA.CAUU-.GAAUaAAUGUAGUACUGUCAUAAGA..UUU----........................................................AUUUUAUGG.AGAGCUAUUUGGAGA
AE005176.1/2276232-2276414 CACAUCGAUAGAGGUcGCAACU.GAU.AUGAauCUAcgCCGAGUUGG---.......AGCACAACAAAGACG...CGUAUUU.AG.AGGAGG.AGA.G.GUUGCCGAAAGAAUUUUGUU--.GCUC.-....AGCAAGGU.U.CUUGGGCUAG.UGAG-.AAAAaCUCACUAGACUGUCGCAAAUg.GUUAAUA........................................................ACCAUGCGG.AGGGCUAUUCGUUCA
CP000923.1/1076332-1076143 AGGUGAGGUAGAGGC.GCGGGUuAUC.AAGA..GUA..GUAUACCAGAGGu......AUUUAAGGGCCGAUG...AAGGUAU.AU.GAAAGG.GAU.G.CUCGCCGAAGC-GCGUAAAUUCcUUAA.A....GUUUACGC.A.GCUGGGCCUA.UGCC-.GAAUaGGUAUAGGACUGUCACUGGA..GGUUUCCcgagc...................................................CUUCAGUGA.AGAGCUAUCUCGCUA
AE008691.1/1930427-1930616 AGGUGAGGUAGAGGC.GCGGGU.CAUcAAGA..GUA..ACAUGCCAGAGG.......UGUUAAGGGCCGAUG...AAGGUGU.GU.GAAAGG.GGU.G.CCCGCCGAAGC-GCGUAAACUUcCUUAaG....GUUUACGC.A.GCUGGGCCUA.UGCC-.GAACaGGUAUAGGACUGUCACUGAAg.GCUCCCCaggc....................................................CUUCAGUGG.AGAGCUAUCUCGCUA
CP000826.1/4955718-4955911 CAAGCCAGAAGAGGU.GCGUCG.CCC.AG--..GUA..GAGUGUCAGAGG.......AGCCGUUGUCCAAUG...ACGGCGC.UU.GAGGGG.GAG.C.GACGCCGAGGUAAGGUGAUGUG.CGGC.-....AUUCAUCG.U.AUCGACUACA.GGGGCuGAAU.CCCCUG-AGUUGUCACCAGGg.AUUGUCCguaggggcaauca...........................................GCAAGGUGG.GGCGCUUCUGGGUGU
AL935263.2/928916-929097 AUCGAAAGAAGAGGAuGCGGUU.AAC.AAUA..GUA..GCCGGCUGGAAGu......GGGUCACCACUUAUG...AAGGUCA.GU.GAACGG.GGC.A.ACCGCCGAAAUCGAUGGAUCAGuGACC.-....GAUUCAUC.C.GUUGGGCCUU.GGUU-.GAAUaAAUCAUGGACUGUCGCAGCUa.GAA----........................................................UAGUUGCGG.GGCGCUAUCGACGAU
AALE02000022.1/49827-50019 UAAGCCAGAAGAGGU.GCGUCG.CCC.AG--..GUA..AAGUGUCAGAGG.......AGCCGUGAUCCGCUG...AAGACAU.UC.GAGGGG.GAG.C.GACGCCGAGACACGGUGAUUUC.GGCC.-....-AUCAGCG.U.GUCGACUGCA.GGGGCuGAAU.CCCCUG-GGUUGUCACCAGU..GCCGUUCcuuuagggcgguca..........................................ACAAGGUGG.AGCGCUUCUGGGUGU
FQ670178.1/927246-927070 UACAAAAGUAGAGGC.GCAAUU.AUU.AUAA..GUA..UUUUUUCA----.......GAGUGGAUAACGAAG...AAGAAAA.AA.GAAAGG.AAU.A.GUUGCCGAAAUCAAAUAAAA--.GUCG.-....UUUUGUUU.G.GUUGGUGGCG.UGCUC.GAAA.GGGGCGACACUGUCAUAGUU..UUUCUGAu.......................................................UAACUAUGG.AGUGCUACGGUUGUU
URS000080DFA3_2336/1-161 -----GGACGGAGGC.GCGCCC.GAG.AUGA..GUA..GGCUGUCCCA--.......UCAGGGGAGGAAUCG...GGGACGG.CU.GAAAGG.CGA.G.GGCGCCGAAGCGAGCAGAGUUC.CUCC.C....GCUCUGCU.UgGCUGGGGGUG.AGGG-.GAAUaCCCUUACCACUGUCGCG---..-------........................................................AA--AGCGG.AGAGCCGUCCA----
#=GR URS000080DFA3_2336/1-161 3D0U_A_SS .....(((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((..........................................................................)))).)..))))))).....
#=GR URS000080DFA3_2336/1-161 3D0X_A_SS .....(((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((.(((((((.}.}}}}.}....)))))))..).)))((((((..((((.......)))).))))))(((((..........................................................................)))).)..))))))).....
#=GR URS000080DFA3_2336/1-161 4ERJ_A_SS .....(((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).)).....{).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((..(((...}...))).)))))))(((((..........................................................................)))).)..))))))).....
#=GR URS000080DFA3_2336/1-161 4ERL_A_SS .....(((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).)).....{).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))((((((..((((...}...)))).))))))(((((..........................................................................)))).)..))))))).....
URS000080E0C5_2336/1-174 --GGCCGACGGAGGC-GCGCCC-GAG-AUGA--GUA--GGCUGUCCCA---------UCAGGGGAGGAAUCG---GGGACGG-CU-GAAAGG-CGA-G-GGCGCCGAAGGGUGCAGAGUUC-CUCC-C----GCUCUGCA-UGCCUGGGGGUA-UGGG--GAAUACCCAUACCACUGUCACGGAG--GUC------------------------------------------------------------UCUCCGUGG-AGAGCCGUCGGUC--
#=GR URS000080E0C5_2336/1-174 3DIG_X_SS ...(((((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DIL_A_SS ...(((((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DIM_A_SS ...(((((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DIO_X_SS ...(((((((((.(..((((((...(.(..........((((((.((...........(..{{{{{{....)...)).)))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DIQ_A_SS ...(((((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DIR_A_SS ...(((((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DIS_A_SS ...(((((((((.(..((((((...(.(..........((((((.((...........(..{{{{{{....)...)).)))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DIX_A_SS ...(((((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DIY_A_SS ...(((((((((.(..((((((...(.(..........(((.(((((...........(..{{{{{{....)...))))).).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DIZ_A_SS ...(((((((((.(..((((((...(.(..........(((.(((((...........(..{{{{{{....)...))))).).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DJ0_A_SS ...(((((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GR URS000080E0C5_2336/1-174 3DJ2_A_SS ...(((((((((.(..((((((...(.(..........(((((((((...........(..{{{{{{....)...))))))).))......).)...).))))))..((((((((((((.}.}}}}.}....)))))))).).)))(((((((.((((.......)))))))))))(((((((((..................................................................)))))))).)..)))))))))...
#=GC SS_cons :::::((((((,,,,.<<<<<<.<<<.----..---..<<<<<<<<____......._______________..._>>>>>>.>>.------.>>>.>.>>>>>,,,<<<<<<<<<<<<__.____._....>>>>>>>>.>.>>><<<<<<<.<<<<_.____.>>>>>>>>>>>,<<<<<<<_.._______........................................................__>>>>>>>.,,,,)))))):::::
#=GC RF aaugacgguAGAGGU.GCgucc.cuc.AugA..GUA..acuuuucuGAgg.......ggaugaaaucCgaUG...Aagaaaa.gu.GAAAGG.gag.g.gacGCCGAagugaguggaccuc.guua.a....gguccacu.c.gcuGGccccg.uggcC.GAAu.gccacggggCUGuCAccgua..uuugUuc........................................................acacggUGg.AGcGCUaccggguga
//