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RF00185.sto
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# STOCKHOLM 1.0
#=GF ID Flavi_CRE
#=GF DE Flavivirus 3' UTR cis-acting replication element (CRE)
#=GF CC New structure 8GZP_S
#=GF CC New structure 8GZQ_S
AY585243.1/10869-10968 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.AAGAACACAGGAUCU
AF306516.1/477-576 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAaUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.AAGAACACAGGAUCU
AF022438.1/10631-10723 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCCC.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF169684.1/10631-10723 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF069076.1/10878-10977 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGU.AAGAACACAGGAUCU
U47032.1/10877-10976 .........................................................................CUGG.GAAuAGACUAGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.AAGAACACAAGAUCU
AF022439.1/10631-10723 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UUUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF217620.1/10865-10964 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AACAUG.UAGcUGGUG.GUGAGG.AAGAACACAGGAUCU
AY099346.1/2415-2507 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF204177.1/10631-10723 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAGCGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCC
M19197.1/10611-10703 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGGACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AB074760.1/10643-10735 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CCUGCUG-.UCUCUA.....C.AG.CAUCA..UUC.CAGGCACAGAGCGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF416457.1/10877-10976 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UACgUGGUG.GUGAGG.AAGAACACAGGAUCU
AY184212.1/10878-10978 .........................................................................CUGG.GAAuAGACUAGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAagCCAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.AAGAACACAGGAUCU
AF075723.1/10877-10976 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UGGcUGGUG.GUGAGG.AAGAACACAGGAUCU
L48961.1/10877-10976 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUUGUG.GUGAGG.AAGAACACAGGAUCU
AF045551.2/10864-10963 .........................................................................CUGG.GAAuAGAGUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAaUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.AAGAACACAGGAUCU
U14163.1/10877-10976 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUA.GUGAGG.AAGAACACAGGAUCU
AF226686.1/10643-10735 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CCUGCUG-.UCUCUA.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF119661.1/10631-10723 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUC.CUGUUG.AAUC-AACAGGUUCU
U88537.1/10643-10735 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CCUGCUG-.UCUCUA.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAA..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF022440.1/10631-10723 .........................................................................AUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF204178.1/10631-10723 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCCG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF098737.1/10877-10976 .........................................................................CUGGaGAU.AGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.AAGAACACAGGAUCU
AF306514.1/473-572 .........................................................................CUGG.GAAuAGAGUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.UUAaUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.AAGAACACAGGAUCU
AF350498.1/10643-10735 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CCUGCUG-.UCUCUA.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCG
AF486638.1/10878-10977 .........................................................................CUGG.GAAuAUACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUUGUG.GUGAGG.AAGAACACAGGAUCU
M14933.1/102-200 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUA.CUAGCACAGAGCGCCGA..AGUAUG.UAGcUUGUG.GUGAGG.AAGAACACAGGAUCU
AF326825.1/10557-10649 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCUG.....C.AA.CAUCA..AUC.CAGGCACAGAGCGCCGC..AAGAUG.GAU.UGGUG.UUG-UU.GAUCCAACAGGUUCU
AY145122.1/10643-10733 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CU-GCUG-.UCUCUA.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AAC-GGAUCU
AF161266.1/10915-11014 .........................................................................CUGG.GAAaAGACUAGG..AGAU.CUU-CUGC.UCUAUU.....C.CAaCAUCAg.UCAcAAGGCACCGAGCGCCGA..ACACUG.UGAcUGAUGgGGG-AG.AAGACCACAGGAUCU
AB074761.1/10643-10735 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CCUGCUG-.UCUCUA.....C.AG.CAUCA..AUC.CAGGCACAGAGCACCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
M84728.1/10631-10723 .........................................................................CUGG.GAA.AGACCAG-..AAAU.ACUACUA-.UCUACU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AF289029.1/10573-10665 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCUA.....C.AA.CAUCA..AUC.CAGGCACAGAGCGCCGC..GAGAUG.GAU.UGGUG.UUG-UU.GAUCCAACAGGUUCU
AY688948.1/10964-11057 .........................................................................CUGG.GAU.AGACUAGG..GGAU.CUU-CUGC.UCUG--.....C.AC.AACCAg.CCAcACGGCACAGUGCGCCGA..UAUAGG.UGGcUGGUG.GUG-CU.AGAA-CACAGGAUCU
M12294.2/10869-10962 .........................................................................CUGG.GAU.AGACUAGG..GGAU.CUU-CUGC.UCUG--.....C.AC.AACCAg.CCAcACGGCACAGUGCGCCGA..CAUAGG.UGGcUGGUG.GUG-CU.AGAA-CACAGGAUCU
Y07863.1/10770-10871 .........................................................................CCUC.GAC.AGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGAUAGUCUG..ACAAGG.AGG.UGAUGuGUGACUcGGAAAAACACCCGCU
M84727.1/10631-10723 .........................................................................CUGG.GAC.AGACCAG-..AAAU.CCAACUA-.UCUACU.....C.AG.CAUCA..UUC.UAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACAGGUUCU
AY274505.1/10929-11022 .........................................................................CUGG.GAU.AGACUAGG..AGAU.CUU-CUGC.UCUG--.....C.AC.AACCAg.CCAcACGGCACAGUGCGCCGA..CAAUGG.UGGcUGGUG.GUG-CG.AGAA-CACAGGAUCU
AB185914.2/10936-11029 .........................................................................CUGG.GAU.AGACUAGG..AGAU.CCU-CUGC.UCUG--.....C.AC.AACCAg.CCAcACGGCACAGUGCGCCGA..CAAUGG.UGGcUGGUG.GUG-CG.AGAA-CACAGGAUCU
U21056.1/10762-10860 .........................................................................CAGG.GAA.AGACCGGAg.UGGU.UCU-CUGCuUUUCCU.....C.CA.GAGGUc.UGU.-GAGCACAGUUUGCUCA..AGAAUAaGCAgACCUU.UGGAUG.AAAAACACAAAACCA
L40361.3/10825-10927 .........................................................................CCCU.CAAcAGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGAUAGUCUG..ACAAGG.AGG.UGAUGuGUGACUcGGAAAAACACCCGCU
AB049391.1/623-725 .........................................................................CCCU.CAAuAGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGAUAGUCUG..ACAAGG.AGG.UGAUGaGUGACUcGGAAAAACACCCGCU
U27496.1/624-726 .........................................................................CCCU.CAAuAGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGAUAGUCUG..ACAAGG.AGG.UGAUGuGUGACUcGGAAAAACACCCGCU
AB049400.1/627-729 .........................................................................CCCU.CAAuAGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGAUAGUCUG..ACAAGG.AGG.UGAUGcGUGACUcGGAAAAACACCCGCU
AB049398.1/628-730 .........................................................................CCCU.CAAuAGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGAUAGUCUG..AGAAGG.AGG.UGAUGuGUGACUcGGAAAAACACCCGCU
M76660.1/535-636 .........................................................................CCUC.GGU.AGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGAUAGUCUG..ACAAGG.AGG.UGAUGuGUGACUcGGAAAAACACCCGCU
AY640589.1/10762-10860 .........................................................................CAGG.GAA.AGACCGGAg.UGGU.UCU-CUGCuUUUCCU.....C.CA.GGGGUc.UGU.-GAGCACAGUUUGCUCA..AGAAUAaGCAgACCUU.UGGAUG.AAAAACACAAAACCA
U52417.1/345-443 .........................................................................CAGG.GAA.AGACCGGAg.UGGU.UCU-CUGCuUUUCCU.....C.CA.GAGGUc.UGU.-GAGCACAGUCUGCUCA..AGAAUAaGCAgACCUU.UGGAUG.AAAAACACAAAACCA
AF069066.1/10825-10927 .........................................................................CCCU.CAAcAGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGACAGUCUG..ACAAGG.AGG.UGAUGuGUGACUcGGAAAAACACCCGCU
AB049396.1/620-721 .........................................................................CCUC.AAU.AGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGAUAGUCUG..ACAAGG.AGG.UGAUGuGUGACUcGGAAAAACACCCGCU
U52423.1/369-467 .........................................................................CAGG.GAA.AGACCGGAg.UGGU.UCU-CUGCuUUUCCU.....C.CA.GGGGUc.UGC.-GAGCACAGUUUGCUCU..AGAAGAaGCAgACCUU.UGGAUG.AAAAACACAAAACCA
U27494.1/1000-1101 .........................................................................CCUC.GGC.AGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGAUAGUCUG..ACAAGG.AGG.UGAUGuGUGACUcGGAAAAACACCCGCU
U52399.1/343-441 .........................................................................CAGG.GAA.AGACCGGAg.UGGU.UCU-CUGCuUUUCCU.....C.CG.GAGGUc.UGU.-GAGCACAGUUUGCUCA..AGAAUAaGCAgACCUU.UGGAUG.AAAAACACAAAACCA
U17066.1/10762-10860 .........................................................................CAGG.GAA.AGACCGGAg.UGGU.UCU-CUGCuUUUCCU.....C.CA.GAGGUc.UGU.-GAGCACAGUUUGCUCA..AGAAUAaGCAgACCUU.UGGAUG.ACAAACACAAAACCA
U52393.1/369-467 .........................................................................CAGG.GAA.AGACCGGAg.UGGU.UCU-CUGCuUUUCCU.....C.CA.GGGGUc.UGU.-GAGCACAGUUUGCUCU..AGAAGAaGCAgACCUU.UGGAUG.AAAAACACAAAACCA
U54798.1/10762-10860 .........................................................................CAGG.GAA.AGACCGGAg.UGGU.UCU-CUGCuUUUCCU.....C.CA.GAGGUc.UGU.-GAGCACAGUUUGCUCA..AGAAUAaGCAgACCUU.UGGUUG.ACAAACACAAAACCA
L06436.1/10738-10839 .........................................................................CCAG.G--.AAACUGGGggGGC-.GGUUCUUGuUCUCCCugagcC.AC.CACCA..UCC.-AGGCACAGAUAGCCUG..ACAAGG.AGA.UGGUGuGUGACUcGGAAAAACACCCGCU
AB049399.1/627-729 .........................................................................CCCU.CAAuAGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGACAGUCUG..ACAAGG.AAG.UGAUGuGUGACUcGGAAAAACACCCGCU
U27495.1/11040-11141 .........................................................................CCUC.GGU.AGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGGUAGUCUG..ACAAGG.AGG.UGAUGuGUGACUcGGAAAAACACCCGCU
AY326413.1/368-466 .........................................................................CAAG.GAA.AGACCGGAg.UGGU.UCU-CUGCuUUUCCU.....C.CA.GGGGUc.UGC.-GAGCACAGUUUGCUCU..AGAAGAaGCAgACCUU.UGGAUG.AAAAACACAAAACCA
AF253420.1/10842-10943 .........................................................................CCUC.GUC.AGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCU.-AGACACAGAUAGUCUG..AAAAGG.AGG.UGAUGcGUGUCUcGGAAAAACACCCGCU
AF357219.1/530-631 .........................................................................CCAG.G--.AAACUGGGggGGC-.GGUUCUUGuUCUCCCugagcC.AC.CGCCA..UCC.-AGGCACAGAUAGCCUG..ACAAGG.AGA.UGGUGaGUGACUcGGAAAAACACCCGCU
AY326415.1/368-467 .........................................................................CAGG.GAA.AGACCGGAg.UGG-.UCU-CUGCuUUUCCU.....C.CA.AGGGUc.UGC.-GAGCACAGUUUGCUU-uuAAAAGAaGCAgACCUUuUGGAUG.AAAAACACAAAACCA
AY193805.1/10685-10787 .........................................................................CCCU.CAUcUGAGGGGG..GGC-.GGUUCUUGuUCUCCCugagcC.AC.CAUCA..CCC.-AGACACAGGCAGUCUA..ACAAGG.AGG.UGAUGuGUGACUcGGAACAACACCCGCU
AY679147.1/10615-10703 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUG.GAA.UGGUG.CUGUUG.AAUC-AACGGG----
AY303796.1/10878-10969 .........................................................................CUGG.GAAuAGACUAGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.--------AAGAACA
AY303795.1/10878-10969 .........................................................................CUGG.GAAuAGACUAGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.--------AGAAACA
AF254453.1/10878-10969 .........................................................................CUGG.GAAuAGACUGGG..AGAU.CUU-CUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGG.--------AAGAACA
AY326414.1/369-467 .........................................................................CAGG.GAA.AGACCGGAg.UGGG.UCU-UUGCuUUUUCU.....U.CA.AGGGUc.UGC.-GAGCACAGUUUGCUUU..AUAAGAaGCAgACCUU.UGGAUG.AAAAACACAAAACCA
AY303794.1/10878-10969 .........................................................................CUGG.GAAuAGACUGGG..AGA-.UCUUCUGC.UCUAUCu....C.AA.CAUCAg.CUAcUAGGCACAGAGCGCCGA..AGUAUG.UAGcUGGUG.GUGAGGaAAAACA---------
AF310149.1/353-435 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUC.GAA.UGGUG.CUGUUGaAUC------------
AF310147.1/373-455 .........................................................................CUGG.GAG.AGACCAG-..AGAU.CCUGCUG-.UCUCUA.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..AAAAUC.GAA.UGGUG.CUGUUGaAUC------------
AF310153.1/295-377 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCUG.....C.AA.CAUCA..AUC.CAGGCACAGAGCGCCGC..AAGAUC.GAA.UGGUG.CUGUUGaAUC------------
AY262283.1/10899-10984 .........................................................................CUGG.GAU.AGACUAGG..AGA-.UCUUCUGC.UCUG--.....C.AC.AACCAg.CCAcACGGCACAGUGCGCCGA..CAAUGG.UGGcUGGUG.GUGCGAgAACA-----------
AF310926.1/379-460 .........................................................................CCAG.G--.AAACUGGGg.GGG-cGGUUCUUGuUCUCCCugagcC.AC.CACCA..UCC.-AGGCACAGAUAGCCUG..ACAAGG.AGA.UGGUG.-UGU--.---------------
AF310933.1/378-458 .........................................................................CCAG.G--.AAACUGGGg.GGG-cGUU-CUUGuUCUCCCugagcC.AC.CGCCA..UCC.-AGGCACAGAUAGCCUG..ACAAGG.AGA.UGGUG.-AGU--.---------------
AF310931.1/380-461 .........................................................................CCAG.G--.AAACUGGGg.GGG-cGGUUCUUGuUCUCCCugagcU.AC.CACCA..UCC.-AGGCACAGAUAGCCUG..ACAAGG.AGA.UGGUG.-UGU--.---------------
AF310930.1/376-457 .........................................................................CCCA.GGA.AGCUGGGGg.GGC-.GUU-CUUGuUCUCCCugagcC.AC.CACCA..UCC.-AGGCACAGACAGCCUG..ACAAGG.AGA.UGGUG.-AGU--.---------------
AF310929.1/376-458 .........................................................................CCCA.GGA.AGCUGGGGg.GGC-.GGUUCUUGuUCUCCCugaucC.AC.CACCA..UCC.-AGGCACAGACAGCCUG..ACAAGG.AGA.UGGUG.-AUU--.---------------
EU670438.1/10738-10819 .........................................................................CCAG.G--.AAACUGGGg.GGG-cGGUUCUUGuUCUCCCugagcC.AC.CACCA..UCC.-AGGCACAGAUAGCCUG..ACAAGG.AGA.UGGUG.-UGU--.---------------
U87412.1/10631-10697 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..A-----.AAA.UGGA-.------.---------------
EF571854.1/10936-11009 .........................................................................CUGG.GAU.AGACUAGG..AGAU.CU-UCUGC.UCUGCA.....CaAC.CAGC-..CAC.ACGGCACAGUGCGCC-G..ACAAUG.GUG.-GCUG.--GU--.---------------
FJ850060.1/10610-10676 .........................................................................CUGG.GAA.AGACCAG-..AGAU.CCUGCUG-.UCUCCU.....C.AG.CAUCA..UUC.CAGGCACAGAACGCCAG..A-----.AAA.UGGA-.------.---------------
8GZP_S gaguuguuagucuguguggaccgacaaggacaguuccaaaucggaagcuugcuuaacacaguucuaacaguuuGUUUaGAU.AGAGAGCA..GUAA.CCUGCUU-.UCUCUG.....C.AA.CAUCA..AUC.CAGGCACAGAGCGCCGC..GAGAUG.GAU.UGGUG.UUGUUG.AUCC-AACAGGUUCU
#=GR 8GZP_S 8GZP_S_SS .....(((((..(((((...(((((..(((....)))..)))))((((..)))).)))))...)))))...........................................................................................................................
8GZQ_S GAGUUGUUAGUCUGUGUGGACCGACAAGGACAGUUCCAAAUCGGAAGCUUGCUUAACACAGUUCUAACAGUUUGUUUAGAU-AGAGAGCA--GUAA-CCUGCUU--UCUCUG-----C-AA-CAUCA--AUC-CAGGCACAGAGCGCCGC--GAGAUG-GAU-UGGUG-UUGUUG-AUCC-AACAGGUUCU
#=GR 8GZQ_S 8GZQ_S_SS .....(((((..(((((...(((((..(((....)))..)))))((((..)))).)))))...)))))...........................................................................................................................
#=GC SS_cons .........................................................................<<<<.___.___>>>>-..<<<-.<<<-----.------.....<.<<.<<<<<..<<<.--<<<_______>>>--..------.>>>.>>>>>.>>>---.-------->>>->>>
#=GC RF .........................................................................Ccgg.GAa.AGAccgGG..gGgU.ccUuCUgc.UCUccu.....C.ag.cAcca..ccc.uAGGCACAGaucGCCug..AaAAuG.ggg.uggUg.cuGaug.AaaAAaACAggacCc
//