-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathRF00233.sto
43 lines (42 loc) · 5.63 KB
/
RF00233.sto
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
# STOCKHOLM 1.0
#=GF ID Tymo_tRNA-like
#=GF DE Tymovirus/Pomovirus/Furovirus tRNA-like 3' UTR element
#=GF CC New structure 4P5J_A
#=GF CC New structure 6MJ0_A
#=GF CC New structure 6MJ0_B
M58314.1/2-79 GAA.......................-.C--UACAGU..UC-CGCUCCUCUAGCACACAGAGGUC.AAU.UG.GGUGCGAC-CCCC-C.CCUCUCCCGUG.GGUCAACGGGAACC
U88847.1/591-676 UUA.......................G.CUCGCCAGUuaGCGAGGUCUGUCCCCACACGACAGAU.AAU.CG.GGUGCAACUCCCGCC.CCUUUUCCGAG.GGUCAUCGGAACCA
J04375.1/6130-6211 AAA.......................U.AUGACCGGU..GUCAUAGCCUCUAGCACACAGAGGUC.GCG.UG.GGUUCAACUCCCC-C.CCUUUUCCGAG.GGU-AUCGGAAACC
AF035201.1/605-688 CCA.......................G.GUCGCCAGU..GCGACACCCGUUCCCACACAACGGGC.ACU.GG.GGUGCAACUCCCCCG.UCUAUCCUGGA.CGUCACCAGGACCA
V01418.1/610-695 UUA.......................G.CUCGCCAGUuaGCGAGGUCUGUCCCCACACGACAGAU.AAU.CG.GGUGCAACUCCCGCC.CCUCUUCCGAG.GGUCAUCGGAACCA
M54918.1/75-159 UUA.......................G.CUCGCCAGUuaGCGAGGUCUGUCCCCACAGGACAGAU.AAU.CG.GGUGCAACUCCCGCC.CCUCUUCCGAG.GGUCAUCGGAACC-
M24799.1/120-196 UCA.......................G.CUCGCCAGUuaGCGAGGUCUGUCCCCACACGACAGAU.AAU.CG.GGUGCAACUCCCGCC.CCUUUUCCGAG.GG---UC--A----
M58313.1/1-81 -AA.......................U.GAAGGCAGU..CCUUCUCCCUUUAGCACACAAAGGUC.AAU.-G.GGUGCGACUCCC-CC.CCUUUUCCGAG.GGUCAUCGGAAACC
J04374.1/6247-6330 UAA.......................UuGCGGACAGU..UCCGCUCCCUCUAGCACACAGAGGUC.CAUuUG.GGUGCGACUCCCCCC.CC--UCCCGUG.GGUCAACGGGAACC
AF035200.1/578-659 UCA.......................G.-UCGCCAGU..GCGAGGCCCAUUCUCUCUCAAUGGGU.-AU.UG.GGUGCAACCCCCCCG.UCCAUCUCGAA.CGUCAUCGAGACCA
Y16104.1/6590-6672 UAA.......................UuGAGGACAGU..UCCUCUCCCUCUAGCACACAGAGGUC.AAAcUG.GGUGCAACUCCCCCC.CC--UUCCGUG.GGU-AACGGAAACC
AF035633.1/1296-1379 UAA.......................UuGAGUCCAGU..GACUCUCCCUCUAGCACACAGAGGUC.AAAcCG.GGUGCAAC-CCC-CC.CUCCCCCCGUA.GGUUAACGGGACCA
AJ277556.1/2880-2963 GAA.......................GaGCGGCCAGUu.GCUGCUGCGAUCAAGACACGAUCGUUcAAA.AG.GGUGCAACUCCCCCC.CC--CUUGGAG.GGU-AUCCAAGACC
AF035199.1/569-652 CCA.......................G.GUCGCCAGU..GCGACACCCGUUCCCACACAACGGGC.AUU.GG.GGUGCAACUCCCCCG.UCUAUCCUGGA.CGUCACCAGGACCA
M24802.1/87-163 UUA.......................G.CUCGCCAGUuaGCGAGGUCUGUCCCCACACGACAGAU.AAU.CG.GGUGCAACUCCCGCC.CCUUCUCCGAG.GG---UC--A----
D00637.1/6279-6362 UCA.......................G.GUCGCCAGU..GCGACACCCGUUCCCACACAACGGGC.AUU.GG.GGUGCAACUCCCCCG.UCCAUCCUGGA.CGUCACCAGGACCA
Z66493.2/2920-3005 GGA.......................U.GAGACGAGUuaGUCUCGACCAUUUUCACACAAUGGUU.CUGaGG.GGUGCAACUCCCCCC.CUUAACUAGAG.GGAAAUCUAG-CCC
M15284.1/14-96 YAA.......................U.GAAGGCAGU..CCUUCUCCCUUUAGCACACAAAGGUC.AAA.UG.GGUGCGACUCCCC-C.CCUUUUCCGAG.GGUCAUCGGAAACC
X54354.1/598-681 UUA.......................G.CUCGCCAGU..GCGAGGCUCGUUCCCACACAACAAGU.AAU.GGuGGUGCAACUCCCCCG.UCC-UCCCGAA.CGUCAUCGGGACCA
M24797.1/93-169 UUA.......................G.CUCGCCAGUuaGCGAAGUCUGUCCCCACACGACAGAU.AAU.CG.GGUGCAACUCCCGCC.CCUUUUCCGAG.GG---UC--A----
M58311.1/2-83 UUC.......................U.CUCG--AGU..GCGAGGCCCAUUCACACACAAUGGGU.-AU.UG.GGUGCAACCCCCCCG.UCCAUCUCGAAcGGUCAUCGAGACCA
AF035636.1/614-699 UCA.......................G.CUCGCCAGUuaGCGAGGCCUGUUCCCACACAACAGGU.AAU.CG.GGUGCAACUCCCGCC.CCUACUCCGAG.GGUCAUCGGAACCA
AF035198.1/571-654 UCA.......................G.GUCGCCAGU..GCGACACCCGUUCCCACACAACGGGC.AUU.GG.GGUGCAACUCCCCCG.UCUAUCCUGAA.CGUCAUCAGGACCA
M24801.1/102-178 UCA.......................G.CUCGCCAGUuaGCGAAGUCUGUCCCCACACGACAGAU.AAU.CG.GGUGCAACUCCCGCC.CCUUUUCCGAG.GG---UC--A----
AF035202.1/598-681 GUA.......................G.UCGGCCAGU..GCCGAGGCCCUUCACACACAAGGGUU.AAU.GG.GGUGCAACUCCCCCG.CCCAUCUCGAG.CGUCAUCGAGACCA
M58310.1/2-84 UUA.......................-.GUUGCCAGU..GCGACACCCGUUCCCACACAACGGGC.A--.UG.GGUGCAACUCCCCCGuCCCACUCUGGAcGGUCACCAGGACCA
U91413.1/613-696 UUA.......................G.CUCGCCAGU..GCGAGGCCUCUUCCUACACAAGAGGU.AUU.GG.GGUGCGACUCCCCCG.UCUAUCCUGAA.CGUCAUCAGGACCA
AF035402.1/1622-1704 UAA.......................UuGUGGACAGU..UCCACUCCCUUUAGCACACAAAGGUCcAAU.CG.GGUGCGACUCCCCCC.CC--UCCUGUG.GG-CUACAGGAACC
URS0002335935_12154/1-86 UUA.......................G.CUCGCCAGUuaGCGAGGUCUGUCUCGACACGACAGAU.AAU.CG.GGUGCAACUCCCGCC.CCUCUUCCGAG.GGUCAUCGGAACCA
#=GR URS0002335935_12154/1-86 4P5J_A_SS ..........................{.(((((..{...)))))(((((((.......))))))).....((.((..}....)))){{.{...((((((}.}}.}.))))))...
URS0000E60B65_12154/1-104 UAAGUUCUCGAUCUUUAAAAUCGUUAG-CUCGCCAGUUAGCGAGGUCUGCGA-----AAGCAGAU-AAU-CG-GGUGCAACUCCCGCC-CUUUCUCCGAG-GGUCAUCGGAACCA
#=GR URS0000E60B65_12154/1-104 6MJ0_A_SS .{{{...(((((}}}....)))))..{.(((((..{...)))))((((((.........)))))).....((.((..}....)))){{.{.....(((.}.}}.}..))).....
#=GR URS0000E60B65_12154/1-104 6MJ0_B_SS ..{{...(((((}}.....)))))..{.(((((..{...)))))((((((.........)))))).....((.((..}....)))){{.{....(((((}.}}.}.)))))....
#=GC SS_cons :::.......................:.<<<<<____..>>>>>,<<<<<<_______>>>>>>,.,,,.<<.<<_______>>>>AA.A,,,,<<<<<a.aa___>>>>>::::
#=GC RF uuA.......................g.gucGcCAGU..gCgacgcCcguuccCACACaacgGgu.Aau.gG.GGUGCAACUCCCcCc.CCuaUcccGag.GGUCAuCgggAcCa
//