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RF00374.sto
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# STOCKHOLM 1.0
#=GF ID Gammaretro_CES
#=GF DE Gammaretrovirus core encapsidation signal
#=GF CC New structure 1S9S_A
#=GF CC New structure 1U6P_B
#=GF CC New structure 2L1F_A
#=GF CC New structure 2L1F_B
X14576.1/670-769 GUCUGUACUAGUUAGCUAACUAGAUCUGUAUCUGGCGGUUCCGUGGAAGAACUGACGAGUUCGG-AUUCCCGACCGCAGCC.CUGAGAGACGUCUCAG.GGGC
K02712.2/736-835 AUCUGUACUAGUUAGCUAACUAGAUCUGUAUCUGGCGGUUCCGUGAAAGAACUGACGAGUUCG-UAUUCCCGGCCGCAGCC.CUGGGAGACGUCUCAGaGG-C
AF033811.1/12-112 GUCGGUACUAGUUAGCUAACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGACGAGUUCGGAACACCCGGCCGCAACC.CUGGGAGACGUCCCAG.GGAC
K03363.1/295-394 UUCUGUACUAGUUAGCUAACUAGGUCUGUAUCUGGCGGCUCCGUGGAAGAACUGACGAGUUCG-UAUUCCCGACCGCAGCC.CUGGGAGACGUCUCAG.GGGC
M12275.1/344-445 GUCUGUACUAGUUGGCUAACUAGAUCUGUAUCUGGCGGUCCCGCGGAAGAACUGACGAGUUCG-UAUUCCCGGCCGCAGCCcCUAGGAGACGUCCCAGcGGCC
S80082.1/697-796 GUCUGUACUAGUUAGCUAACUAGAUCUGUAUCUGGCGGUUCUGCGGAAGAACUGACGAGUUCG-UAUUCCCGGCCGCAGCC.CUGGGAGACGUCCCAGcGG-C
U00220.1/894-994 GUCUGUACUAGUUAGCUAACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGACGAGUUCUGAACACCCGGCCGCAACC.CUGGGAGACGUCCCAG.GGAC
M64095.1/673-772 AUCUGUACUAGUUAGCUAACUAGAUCUGUAUCUGGCGGUUCCGUGGAAGAACUGACGUGUUC-AUAUUCCCGACCGCAGCC.CUGGGAGACGUCUCAGaGG-C
Z11128.1/274-374 GUCUGUACUAGUUGGCCGACUAGAUUGGUAUCUGGCGGAUCCGUGGUGGAACUGACGAGUUCGAGACACCCGGCCGCAACC.CUGGGAGACGUCCCAG.GGAC
AF411814.1/275-375 GUCUGUACUAGUUGGCCGACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAGCUGACGAGUUCGGAACACCCGGCCGCAACC.CUGGGAGACGUCCCAG.GGAC
U13766.1/293-392 AUCUGUACUAGUUAGCUAACUAGAUCUGUAUCUGGCGGUUCCGUGGAAGAACUGACGAGUUCG-UAUUCCCGACCGCAGCC.CUGGGAGACGUCUCAGaGG-C
AF169256.1/297-396 UUCUGUACUAGUUAGCUAACUAGAUCUGUAUCUGGCGGCUCCGUGGAAGAACUGACGAGUUCG-UAUUCCCGACCGCAGCC.CUGGGAGACGUCUCAGaGG-C
AF462057.1/276-376 GUCGGUACUAGUUAGCUAACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGACGAGUUCGGAACACCCGGCCGCGACC.CUGGGAGACGUCCCAG.GGAC
K02729.1/786-886 GUCUGUACUAGUUGGCCGACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGACGAGUUCGGAACACCCGGCCGCAACC.CUGGGAGACGUCCCGG.GGAC
J02266.1/718-818 GUCUGUACUAGUUAGCUAACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGACGAGUUCUGAACACCCGGCCGCAACC.CAGGGAGACGUCCCAG.GGAC
M93134.1/274-374 GUCUGUACUAGUUGGCCGACUAGCUCUGUAUCUGGCGGACCCGUGGUAGAACUGACGAGUUCGGGAUACCCGGCCGCAACC.CUGGGAGACGUCCCAG.GGAC
M96854.1/729-829 GUCUGUACUAGUUAGCUAACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGACGAGUUCUGAACACCCGGCCGCGACC.CUGGGAGACGUCCCAG.GGAC
AF019230.1/276-376 GUCUGUACUAGUUGGCCGACUAGCUCUGUACCUGGCGGACCCGUGGUGGAACUGACGAGUUCGGAACACCCGGCCGCAACC.CUGGGAGACGUCCCGG.GGAC
AJ583798.1/721-821 GUUUGUACUAGUUGGCCGACUAGCUCUGUACCUGGCGGACCCGUGGUGGAACUGACGGGUUCGAGACACCCGGCCGCAACC.CUGGGAGACGUCCCAA.GGAC
M26526.1/655-755 GCCUGUACUAGUUGGCUGACUAGACCUGUAUCUGGCGGUUCCGUGGAAGAACUGACGAGUUCGGAGUUCCCGGCCGCAACC.CUGGGAGACGUCCCGG.GGAC
U94692.1/274-374 GUCUGAACUAGUUGGCCGACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGACGAGUUCGAGACACCCGGCCGCAACC.CUGGGAGACGUCCCAG.GGAC
V01185.1/721-821 GUCUGUACUAGUUAGCUAACAUGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGACGAGUUCUGAACACCCGGCCGCAACC.CUGGGAGACGUCCCAG.GGAC
URS000080E0D7_11801/1-101 GGCGGUACUAGUUGAGAAACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGUGAAGUUCGGAACACCCGGCCGCAACC.CUGGGAGAGGUCCCAG.GGUU
#=GR URS000080E0D7_11801/1-101 1S9S_A_SS (((((.(((((((....))))))).)))))....((.(..(((.(((((((((....)))))....)))))))).))((((.((((((....)))))).))))
#=GR URS000080E0D7_11801/1-101 1U6P_B_SS ((((((.((((((....)))))).))))))....((....(((.(((((((((....)))))....)))))))..))((((.((((((....)))))).))))
URS000080DD56_11801/1-65 ---------------------------------GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACC.CUGGGAGACGUCCCAG.G---
#=GR URS000080DD56_11801/1-65 2L1F_A_SS ..................................((((..(((.(((((((((....)))))....)))))))))))...(.((((((....)))))).)...
URS000080DE60_11801/1-66 ---------------------------------GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACC-CUGGGAGACGUCCCAG-GG--
#=GR URS000080DE60_11801/1-66 2L1F_B_SS ..................................((((..(((.(((((((((....)))))....)))))))))))..((.((((((....)))))).))..
#=GC SS_cons ::<-<--<<<<<<____>>>>>>-->->,,,,,,<<<<--<<<-<<<<<<<<<____>>>>>---->>>>>>>>>>>,,<<.<<<<<<____>>>>>>.>>::
#=GC RF gUcuGUACuaGuuaGCuaaCuaGaUCugUAUCUGGCGGaucCGUGGugGaaCuGACGaGuuCggaAcaCCCGgCCGCAaCC.CuGgGaGACGuCcCaG.GGaC
//