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RF00375.sto
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# STOCKHOLM 1.0
#=GF ID HIV_PBS
#=GF DE HIV primer binding site (PBS)
#=GF CC New structure 6WB0_C
#=GF CC New structure 6WB1_C
#=GF CC New structure 6WB2_C
#=GF CC New structure 7LVA_A
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L28841.1/453-551 ..CUUUGGUAGCUARAGAUCCCUUAGACCCUUUUAGUCAGUGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGCGAAAAGGAAACCAGAG..
AY118157.1/126-224 ..CUCUGGUAACUAGAGAUCCCUCAGACUACUUUUGUCAGUGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACCCGAAAGCGAAAGUAAGACCAGAG..
K03458.1/5030-5128 ..CUCUGGUAACUAGAGAUCCCUCAGAUACCUUUAGUCAGAGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGUCCUGAAAGCGAAAGUAGAACCAGAG..
L28914.1/463-561 ..CUCUGGUAACUAGAGAUCCCUCAGACCCAUUUAGUCAGUGUAA..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACCCGAAAGCGAAAGUAGAACCAGAG..
AF096644.1/518-615 ..CUCUGGUAACUAGAGAUCCCUCAGACC-AUUUUGGUAGCGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACCCGAAAACGAAAGUAAGACCAGAG..
AF254707.1/516-614 ..CUCUGGUAACUAGAGAUCCCUCAGAUCUCUUUGGUCUGCGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGCGAAAGUAGAACCAGAG..
L28876.1/483-581 ..CUCUGGUAACUAGAGAUCCCUCAGACCAUUUUAGUCAGUGUGG..AAAAUCUCUAGMAGUGSCGCCCGAACAGGGACUUGAAAGCGAAAGGGAAACCAGAG..
AY352275.1/580-677 ..CUCUGGUAUCUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGUGAAAGUUAA-CCAGAG..
U80508.1/412-510 ..CUCUGGUAACUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAACGAAAGUGAGACCAGAG..
L28850.1/453-551 ..CUYUGGUAGCUAGAGAUCCCUUAGACCCUUUUAGUCAGUGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGUGAAARGRGAACCAGAG..
U81465.1/411-509 ..CUCUGGUAACUAGAGAUCCCUCAGACCCUUUUAGUUAGUGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAACGAAAGAGAAACCAGAG..
AJ271445.1/577-675 ..CUCUGGUAGCUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUAG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGUGAAAGUUGAACCAGAG..
AY517299.1/14-112 ..CUCUGGUAACUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGCGAAAGGGAAACCAGAG..
AF465242.1/652-750 ..CUCUGGUAACUAGAGAUCCCUCAGACCAUUUUAGUCAGUGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACCGGAAAGCGAAAGAGAAACCAGAG..
DQ373063.1/124-224 ..CUCUGGUAUCUAGAGAUCCCUCAGAUAACUGUAGUCUGUGCGGccAAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAACGAAAGUAAGACCAGAG..
URS0000D56C30_11676/1-101 gaCUCUGGUAACUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUGG..AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGCGAAAGUAAAGCCAGAG..
#=GR URS0000D56C30_11676/1-101 6WB0_C_SS ...........(((((.....................................)))))...............................................
#=GR URS0000D56C30_11676/1-101 6WB1_C_SS ...........((((.......................................))))...............................................
#=GR URS0000D56C30_11676/1-101 6WB2_C_SS ...........((((.......................................))))...............................................
URS00021ED92D_11676/1-103 GGCUCUGGUAACUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUGG--AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGCGAAAGUAAAGCCAGAGCC
#=GR URS00021ED92D_11676/1-103 7LVA_A_SS (((((((((..(((((((((((.(.(((.......))).).).)).....)))))))).(.((.((((((...)))).((....)))).)).)...)))))))))
#=GC SS_cons ..(((((((,,<<<<<<<<__________________________..___>>>>>>>>,,,,,,,,<<<_____>>>,,,,,,,,,,,,,,,,,,,)))))))..
#=GC RF ..CuCuGGuAaCuaGaGauCCCUCAGACccuUuUaGucaGUGUGG..AAAauCuCuaGCAGUGGCGCCCGAACAGGGACuuGAAAGcGAAAGuaaAaCCaGaG..
//