-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathRF00620.sto
71 lines (70 loc) · 36 KB
/
RF00620.sto
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
# STOCKHOLM 1.0
#=GF ID HCV_ARF_SL
#=GF DE Hepatitis C alternative reading frame stem-loop
#=GF CC New structure 4UJC_AC
#=GF CC New structure 4UJD_BC
#=GF CC New structure 5FLX_z
NC_038882.1/387-522 AACCGUCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGAGGUA
NC_004102.1/387-522 AACCGUCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGAGGUA
EU234065.2/282-417 AACCGUCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGAGGUA
MN164851.1/46-181 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGCCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGGUU.................GGGUG.......................................UGCGCGCGA.....................CUAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGAGA
KJ439777.1/387-522 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGCCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCAAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGGCA
MN977327.1/325-460 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGCGGCCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......CU....A......................................CCGCGCAG...........................G...GGCCCUAGAUU.................GGGUG.......................................UGCGCGCGG.....................CAAGGA...................................AGAC............................................UU................................CAGAGCGGUCGCAACCUCGUGGGA
AY587845.1/314-449 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGCCAGAUCG.UUGG.....CGG........AGUAU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAACGGUCCCAGCCACGUGGAA
AJ851228.1/360-495 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGUGGUCAGAUCG.UUGG.....UGG........AGUUU.ACCUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CUAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGGGA
KY348757.1/350-485 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGUGGUCAGAUCG.UUGG.....UGG........AGUCU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCAG.....................CUAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGGAA
KJ439768.1/387-522 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGUGGUCAGAUCG.UUGG.....UGG........AGUUU.ACCUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CUAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGGCA
MN164872.1/46-181 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGCCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGAAU.................GGGUG.......................................UGCGCGCAG.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGGAA
MW689980.1/191-326 AACCGUCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGAGU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGGGA
MW689962.1/191-326 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGUCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CAGAGCGGUCGCAACCUCGCGGUC
KX767023.1/319-454 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGUCAGAUCG.UUGG.....UGG........AGUUU.ACCUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CUAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGGAA
EU234061.2/335-470 AACCGUCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGUCAGAUCG.UUGG.....UGG........AGUUU.ACCUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CUAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGGAA
AB677533.1/387-522 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......CU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CAAGGA...................................AGAC............................................UU................................CCGAGCGAUCCCAGCCGCGUGGGA
MW689975.1/381-516 AACCGUCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGCGGCCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......CU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGG.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCACAGCCCCGCGGAC
MW689965.1/394-529 AACCGCCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGCGGGCAGAUCG.UUGG.....UGG........AGUCU.AUCUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CUAGGA...................................AGAC............................................UU................................CCGAGCGGUCACAACCUCGUGGGA
MW689971.1/350-485 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGACAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCGCGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGUGGAA
MW690013.1/370-505 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGUGGUCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGAA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGCGGAA
KC248199.1/387-522 AACCGCCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGUGGUCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......CU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGG.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGCGGCA
MN164860.1/46-181 AACCGUCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGCGGAA
NC_009823.1/386-521 AACCGUCGCCC.ACAAGAC.G.........................UUAA.............................................................................GUUUCC................GGGCGGCGGCCAGAUCG.UUGG.....CGG........AGUAU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CAAGGA...................................AGAC............................................UU................................CGGAGCGGUCCCAGCCACGUGGAA
AF169004.1/386-521 AACCGUCGCCC.ACAAGAC.G.........................UUAA.............................................................................GUUUCC................GGGCGGCGGCCAGAUCG.UUGG.....CGG........AGUAU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CAAGGA...................................AGAC............................................UU................................CGGAGCGGUCCCAGCCACGUGGGA
JX227965.1/309-444 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGCCAGAUCG.UUGG.....CGG........AGUAU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCGAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAACGGUCCCAGCCACGUGGGA
KC197233.1/359-494 AACCGCCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGUGGCCAGAUCG.UUGG.....UGG........UGUAU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCCGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAACGGUCCCAGCCACGUGGGA
AB047639.1/386-521 AACCGUCGCCC.AGAAGAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGCGGCCAGAUCG.UUGG.....CGG........AGUAU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCACGA.....................CAAGGA...................................AAAC............................................UU................................CGGAGCGGUCCCAGCCACGUGGGA
MK548369.1/367-502 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGCCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......CU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CAAGGA...................................AGAC............................................UU................................CCGAGCGAUCCCAGCCGCGUGGRA
AY232740.1/350-485 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......CU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CAAGGA...................................AGAC............................................UU................................CCGAGCGAUCCCAGCCGCGUGGAA
KC197230.1/359-494 AACCGCCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGUGGCCAGAUCG.UUGG.....CGG........GGUAU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AAAC............................................UU................................CCGAACGGUCCCAGCCACGUGGGA
NC_009824.1/385-520 AUCCGUCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGACAGAUCG.UUGG.....UGG........AGUAU.ACGUG.......UU....G......................................CCGCGCAG...........................G...GGCCCACGAUU.................GGGUG.......................................UGCGCGCGA.....................CGCGUA...................................AAAC............................................UU................................CUGAACGGUCACAGCCUCGCGGAC
KY620603.1/384-519 AUCCGUCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGACAGAUCG.UUGG.....UGG........AGUAU.ACGUG.......UU....G......................................CCGCGCAG...........................G...GGCCCACGAUU.................GGGUG.......................................UGCGCGCGA.....................CGCGUA...................................AAAC............................................UU................................CUGAACGGUCACAGCCUCGCGGAC
KJ470619.1/386-521 AUCCGUCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGCGGCCAGAUCG.UUGG.....UGG........AGUCU.ACUUA.......CU....G......................................CCGCGCAG...........................G...GGCCCAAGAUU.................GGGUG.......................................UGCGCGCAG.....................UUCGUA...................................AAAC............................................UU................................CCGAGCGGUCAGAACCCCGCAACC
JF735124.1/385-520 GUCCGUCGCCC.ACAGAAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGAGGACAGAUCG.UUGG.....UGG........AGUUU.ACGUG.......CU....G......................................CCUCGCAG...........................G...GGCCCAACAUU.................GGGUG.......................................UGCGAGCGG.....................UACGCA...................................AGAC............................................UU................................CCGAGCGGUCACAGCCCCGUGGUA
MN628597.1/388-523 AUCCGUCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGCGGACAGAUCG.UUGG.....UGG........AGUAU.ACGUG.......UU....G......................................CCGCGCAG...........................G...GGCCCACGAUU.................GGGUG.......................................UGCGCGCGA.....................CGCGUA...................................AAAC............................................UU................................CUGAACGGUCACAGCCUCGCGGAC
KY620874.1/393-528 CCCCGUCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGCGGGCAGAUCG.UUGG.....UGG........AGUAU.AUGUG.......CU....G......................................CCGCGCAG...........................G...GGCCCACGAUU.................GGGUG.......................................UGCGCGCGG.....................UACGUA...................................AGAC............................................UU................................CCGAGCGGUCGCAACCUCGCGGAC
JF735122.1/385-520 AACCGCCGGCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................AGGCGGCGGUCAGAUCG.UUGG.....UGG........AGUUU.ACGUA.......CU....A......................................CCACGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGUGCAG.....................UGCGCA...................................AGAC............................................UU................................CCGAGCGGUCACAACCUCGCAGUA
NC_009825.1/325-460 AACCGCCGCCC.AAUGGAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGUGGCCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGAUU.................GGGUG.......................................UGCGCGCGA.....................CUCGGA...................................AGAC............................................UU................................CGGAGCGGUCGCAACCUCGUGGAA
KM043284.1/386-521 AACCGCCGCCC.CAUGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGUGGUCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCCGGUU.................GGGUG.......................................UGCGCGCGA.....................CUCGGA...................................AGAC............................................UU................................CGGAGCGGUCGCAACCUCGUGGGA
FJ462437.1/386-521 AACCGCCGCCC.AAUGGAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGUGGCCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGAUU.................GGGUG.......................................UGCGCGCGA.....................CUAGGA...................................AGAC............................................UU................................CGGAGCGGUCGCAACCUCGUGGGA
NC_009826.1/325-460 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGUCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAAAUU.................GGGUG.......................................UGCGCGCGA.....................CUCGGA...................................AGAA............................................UU................................CGGAACGGUCGCAACCCCGUGGAC
MH427311.1/385-520 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGUCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGGUU.................GGGUG.......................................UGCGCGCAA.....................CUCGGA...................................AGAC............................................UU................................CAGAACGGUCGCAACCCCGUGGAC
DQ278891.1/386-521 AACCGCCGCCC.AAUGGAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGCGGCCAGAUCG.UCGG.....UGG........AGUCU.ACUUA.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................CU................................CCGAACGGUCCCAGCCCAGAGGUA
LC435023.1/328-463 AACCGCCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UCGG.....UGG........AGUUU.ACCUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUCGUUU.................GGGUG.......................................UGCGCGCGA.....................CUAGGA...................................AGAC............................................UU................................CUGAACGGUCCCAGCCCAGGGGUA
MK327987.1/372-507 ACCCGCCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGCGGCCAGAUCG.UUGG.....UGG........AGUCU.ACUUG.......CU....A......................................CCGCGCAG...........................G...GGCCCUAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CUGAACGGUCCCAGCCCAGAGGCA
MG878999.1/46-181 CUCCGUCGCCC.AAUGGAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGCGGCCAGAUCG.UGGG.....UGG........AGUCU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCGAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................GU................................CCGAGCGAUCCCAGCCCCGAGGGA
KC844040.1/384-519 AACCGUCGCCC.AAUGGAC.G.........................UUAA.............................................................................GUUCCC................GGGCGGCGGCCAGAUCG.UUGG.....UGG........AGUCU.ACUUG.......UU....A......................................CCGCGCAG...........................G...GGCCCCAGAUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGAUCCCAGCCCCGAGGGA
MG717928.1/388-523 AACCGUCGCCC.AAUGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCCGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CCGAGCGAUCCCAGCCCAGAGGCA
KJ678751.1/345-480 AACCGUCGCCC.AAUGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCCGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGAA...................................AGAC............................................UU................................CCGAGCGAUCCCAGCCCAGAGGCA
MG717925.1/331-466 AACCGUCGCCC.AACGGAC.G.........................UCAA.............................................................................GUUCCC................GGGUGGCGGUCAGAUCG.UUGG.....CGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCCGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGAA...................................AGAC............................................UU................................CCGAGCGAUCCCAGCCCAGAGGCA
NC_009827.1/388-523 AACCGUCGCCC.AAUGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGCGGCCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......CU....G......................................CCGCGCAG...........................G...GGCCCACGAUU.................GGGUG.......................................UGCGCGCCA.....................CAAGAA...................................AGAC............................................AU................................CCGAGCGAUCCCAGCCCAGAGGUA
AY878652.1/354-489 AACCGUCGUCC.AAUGGAU.G.........................UUAA.............................................................................GUUCCC................GGGCGGCGGUCAGAUCG.UUGG.....UGG........AGUCU.ACUUA.......UU....G......................................CCGCGCAG...........................G...GGCCCACGUUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CUGAACGAUCCCAGCCCAGAGGCA
KM504115.1/385-520 AACCGCCGCCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGUGGUCAGAUCG.UCGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCCAGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................UU................................CAGAACGGUCSCAGCCCAGAGGCA
EU158186.1/353-488 AACCGCCGCCC.ACAGGAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGCGGACAGAUCG.UCGG.....UGG........AGUUU.ACUUA.......CU....G......................................CCGCGCAG...........................G...GGCCCUCGUUU.................GGGUG.......................................UGCGCGCAG.....................UGAGGA...................................AGAC............................................UU................................CCGAACGGUCCCAGCCCAGAGGGA
MK139017.1/384-519 AACCGUCGCCC.ACAGGAC.G.........................UYAA.............................................................................GUUCCC................GGGCGGCGGUCAGAUCG.UUGG.....UGG........AGUCU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCACGGUU.................GGGUG.......................................UGCGCGCGA.....................CGAGGA...................................AGAC............................................CU................................CUGAACGAUCCCAGCCCAGAGGCA
NC_030791.1/385-520 GUCCGUCGCCC.ACAGAAC.G.........................UUAA.............................................................................GUUCCC................GGGUGGCGGGCAGAUCG.UUGG.....CGG........AGUCU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUAGAUU.................GGGUG.......................................UGCGCGGCA.....................CUAGGA...................................AGAG............................................UU................................CGGAGCGAUCGCAGCCCAGGGGAA
MH590700.1/385-520 AACCGCCGUCC.ACAGGAC.G.........................UCAA.............................................................................GUUCCC................GGGCGGCGGUCAGAUCG.UUGG.....UGG........AGUUU.ACUUG.......UU....G......................................CCGCGCAG...........................G...GGCCCUCGGUU.................AGGUG.......................................UGCGCGCGA.....................CGAGAA...................................AGAC............................................UU................................CAGAGCGGUCGCAACCCCGCGGCA
URS000080E1FF_11103/1-504 GCCAGCCCCCUGAUGGGGGCGACACUCCACCAUGAAUCACUCCCCU----GUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCC----CCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGCCAGGAC-GACCGGGUCCUUU--CUUG-GAUAAACCCGCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCG-AAAGGCCU------UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUGCACCAUGAGCACGAAUCCUAAACCUCAAAGAAAAA------CCAAACGUAACACCAACCGUCGCCCACAGGACGUC----AAGUUCCCGGGUGGCGGUCUAGACGCCGAGAUCAGAAAUCCCUC--UCUCGGAUCGCAUUUGGACUUCUGCCUUCGGGCACCACGGUCGGAUCCGAAUU---
#=GR URS000080E1FF_11103/1-504 4UJC_AC_SS ............................................((....(.((((.....(((.(....(.((....(((((.......))))).....)).)....)..))))))))))...........(((((((((((.((((.((.((.((((((..(.((((....)))).)(((......................................................))).(((....))))))).)).)).)).(((.....(((......))).....)))..........)))).))(((......)))((.{{{{{{.))))))))))).}}}}}}.............................................................................................................................................................................................
#=GR URS000080E1FF_11103/1-504 4UJD_BC_SS ............................................((....(.((((.....(((.(....(.((....(((((.......))))).....)).)....)..))))))))))...........(((((((((((.((((.((.((.((((((..(.((((....)))).)(((......................................................))).(((....))))))).)).)).)).(((.....(((......))).....)))..........)))).))(((......)))((.{{{{{{.))))))))))).}}}}}}.............................................................................................................................................................................................
#=GR URS000080E1FF_11103/1-504 5FLX_z_SS ...........................................(((....(.((((.....((((((((((.((....(((((.......))))).....)).)))))).))))))))))))..........(((((((((((.(((((((.(((((((((..((((.(....).))))(((......................................................))).((......)))))).))))).)))(((.....((........)).....)))(........))))){))((((..}.))))(((.{{{{{)))))))))))).}}}}}..............................................................................................................................................................................................
#=GC SS_cons ::<<<<<<<<<.---<<<<._.........................____.............................................................................>>>>--................>>>>>>>>>:::<<<<<.<<<<.....-<<........-<<<<.-<<<<.......--....-......................................-<<<<<<-...........................-...-<<<<______.................>>>>-.......................................>>>>>>---.....................>>->>-...................................>>>>............................................>>................................>>>->>>>>>::::::::::::::
#=GC RF AaCCgcCgCCC.AcaGgaC.G.........................UuAA.............................................................................GuuCCC................GGGcGgcGGuCAGacCG.ccgG.....ugg........AGucu.AcccG.......uU....G......................................CCGCGCaG...........................G...GgCCCuaGaUU.................GGGuG.......................................uGCGCGcgA.....................CgaggA...................................agaC............................................cu................................CcgAgCGguCaCAaCCucGuGGaA
//