RF00622.sto

# STOCKHOLM 1.0
#=GF ID CPEB3_ribozyme 
#=GF DE Mammalian CPEB3 ribozyme 
#=GF CC New structure 7QR3_C
#=GF CC New structure 7QR3_D
#=GF CC New structure 7QR4_B

AC113124.9/161461-161384                 AGAGGAUAACAGGGGGCCACAGCAGAAGCGUUCACGUCGCGGCCCCUGUCAGAUUCUGGC..GAAUCUGCGAAUUCUGCU
AC096310.9/197397-197321                 AGAGGAUAACAGGGG-CCACAGCAGAAGCGUUCACGUCGCGGCCCCUGUCAGAUUCUGGU..GAAUCUGCGAAUUCUGCU
AL158040.14/122218-122141                AGGGGAUAACAGGGGGCCACAGCAGAAGCGUUCACGUCGCAGCCCCUGUCAGAUUCUGGU..GAAUCUGCGAAUUCUGCU
AAPY01211722.1/3878-3801                 CGAGGAUAAUAGGGGGCCACAGCAGAAGCGUUCACGUCGCGGCCCCUGUCAGAUUCUGGU..GAAUCUGCGAAUUCUGCG
AAFR03024585.1/20274-20351               AGUGGAUAACAGGGGGCCAUAGCAGAAGCGUUCACGUCGCGGCCCCUGUCAGAUUCAUAG..GAAUCUGCGAAUUCUGCU
AAFC03085012.1/105656-105579             AAAGGAUAACAAGGGGCCAGAGCAGAAGCAUUCACGUCGCGGCCCCUGUCAGAUUCUGGU..GAAUCUGCGAAUUCUGCU
AAIY01234049.1/2-76                      UGAGCAUAAC--AGGGCCACCCCA-AAGCGUUCACAUUGUGGCCCCUGUCAGAUUCUGGU..AAAUCUGCGAGUUCUGCU
AAGV020425402.1/596-519                  AUAGAAGAUAAUGGGGCCACAGCAGAAGCAUUCAUGUUGCAGCCCUUGUGAGAUUCAAGU..GAAUCUGUGAAUUCUGCU
AC190203.1/105322-105245                 AGGGGAUAACAGGGGGCCACAGCAGAAGCGUUCACGUCGCGGCCCCUGUCAGAUUCUGGU..GAAUCUGCGAAUUCUGCU
AAGJ04021094.1/6040-5967                 AGGGGGGUCCCGGGGGCCAUUGAAGGAGCGUUCACGUCGCGGCCCCUGUCAGAU----GA..AAAUCUGCGAAUCCUUCA
AAEX03015410.1/35073-34998               AGAGGAUAAC--GGGGCCACAGCAAAAGUGUUCACGUCAUGGCCCCUGUCAGAUUCUGGU..GAAUCUGCAAAUUCUGCU
AAGJ04154883.1/9182-9255                 AGAGGUACGCGGGGGGCCAUUGAAGGAGCGUUCACGUCGCGGUCCCUGUCAGAU----GA..AAAUCUGCGAAUCCUUCA
URS0002617738_9598/1-69                  -----------GGGGGCCACAGCAGAAGCGUUCACGUCGCGGCCCCUGUCAGCCAUUGCAcuCCGGCUGCGAAUUCUGCU
#=GR URS0002617738_9598/1-69 7QR3_C_SS   ...........(((((((..{{{{{{{(((.......)))))))))).((((((..........))))))...}}}}}}}
#=GR URS0002617738_9598/1-69 7QR3_D_SS   ...........(((((((...{{{{..((.........))))))))).((((((..........)))))).....}}}}.
URS0002617729_9606/1-69                  -----------GGGGGCCACAGCAGAAGCGUUCACGUCGCAGCCCCUGUCAGCCAUUGCACUCCGGCUGCGAAUUCUGCU
#=GR URS0002617729_9606/1-69 7QR4_B_SS   ...........((((((...{{{{{{{(((...{{}}))).))))))..(((((..........)))))....}}}}}}}
#=GC SS_cons                             ::::::::::::<<<<<---AAAAAAA<<<__B____>>>->>>>>-b-<<<<<<<____..>>>>>>>::::aaaaaaa
#=GC RF                                  AGaGgAuAacagGGGGCCAcaGcAGAAGCGUUCACGUCGCGGCCCCUGUCAGAUUCugGu..GAAUCUGCGAAUUCUGCu
//